data_8E3J # _model_server_result.job_id G-0jMqmyTPWvEYW1qFqM6Q _model_server_result.datetime_utc '2024-11-15 06:32:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e3j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":904}' # _entry.id 8E3J # _exptl.entry_id 8E3J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8E3J _cell.length_a 135.207 _cell.length_b 179.208 _cell.length_c 180.59 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E3J _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,X 1 1 B,M,N,O,P,Q,R,S,T,U,V,W,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 656 A CYS 654 1_555 A SG CYS 670 A CYS 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 B SG CYS 656 B CYS 654 1_555 B SG CYS 670 B CYS 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? covale ? covale1 B ND2 ASN 47 B ASN 45 1_555 M C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8E3J _atom_sites.fract_transf_matrix[1][1] 0.007396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 1101 1101 GOL GOL . D 3 UGO A 1 1102 1201 UGO LIG . E 4 SO4 A 1 1103 1 SO4 SO4 . F 4 SO4 A 1 1104 5 SO4 SO4 . G 4 SO4 A 1 1105 7 SO4 SO4 . H 4 SO4 A 1 1106 8 SO4 SO4 . I 4 SO4 A 1 1107 9 SO4 SO4 . J 4 SO4 A 1 1108 10 SO4 SO4 . K 4 SO4 A 1 1109 11 SO4 SO4 . L 4 SO4 A 1 1110 12 SO4 SO4 . M 5 NAG B 1 901 1001 NAG NAG . N 2 GOL B 1 902 1101 GOL GOL . O 2 GOL B 1 903 1201 GOL GOL . P 2 GOL B 1 904 1301 GOL GOL . Q 2 GOL B 1 905 1401 GOL GOL . R 3 UGO B 1 906 1501 UGO LIG . S 4 SO4 B 1 907 2 SO4 SO4 . T 4 SO4 B 1 908 3 SO4 SO4 . U 4 SO4 B 1 909 4 SO4 SO4 . V 4 SO4 B 1 910 6 SO4 SO4 . W 4 SO4 B 1 911 13 SO4 SO4 . X 6 HOH A 1 1201 16 HOH HOH . X 6 HOH A 2 1202 19 HOH HOH . X 6 HOH A 3 1203 21 HOH HOH . X 6 HOH A 4 1204 10 HOH HOH . X 6 HOH A 5 1205 12 HOH HOH . X 6 HOH A 6 1206 17 HOH HOH . X 6 HOH A 7 1207 20 HOH HOH . X 6 HOH A 8 1208 8 HOH HOH . X 6 HOH A 9 1209 2 HOH HOH . X 6 HOH A 10 1210 18 HOH HOH . Y 6 HOH B 1 1001 6 HOH HOH . Y 6 HOH B 2 1002 8 HOH HOH . Y 6 HOH B 3 1003 23 HOH HOH . Y 6 HOH B 4 1004 25 HOH HOH . Y 6 HOH B 5 1005 8 HOH HOH . Y 6 HOH B 6 1006 3 HOH HOH . Y 6 HOH B 7 1007 4 HOH HOH . Y 6 HOH B 8 1008 1 HOH HOH . Y 6 HOH B 9 1009 11 HOH HOH . Y 6 HOH B 10 1010 14 HOH HOH . Y 6 HOH B 11 1011 13 HOH HOH . Y 6 HOH B 12 1012 45 HOH HOH . Y 6 HOH B 13 1013 82 HOH HOH . Y 6 HOH B 14 1014 22 HOH HOH . Y 6 HOH B 15 1015 9 HOH HOH . Y 6 HOH B 16 1016 7 HOH HOH . Y 6 HOH B 17 1017 5 HOH HOH . Y 6 HOH B 18 1018 24 HOH HOH . Y 6 HOH B 19 1019 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . P 2 -43.987 -33.231 -2.473 1 97.37 ? C1 GOL 904 B 1 HETATM 2 O O1 GOL . . . P 2 -43.098 -32.153 -2.756 1 100.46 ? O1 GOL 904 B 1 HETATM 3 C C2 GOL . . . P 2 -45.38 -32.973 -3.017 1 90.69 ? C2 GOL 904 B 1 HETATM 4 O O2 GOL . . . P 2 -45.325 -32.915 -4.441 1 76.03 ? O2 GOL 904 B 1 HETATM 5 C C3 GOL . . . P 2 -46.005 -31.704 -2.469 1 92.15 ? C3 GOL 904 B 1 HETATM 6 O O3 GOL . . . P 2 -47.235 -31.382 -3.113 1 89.24 ? O3 GOL 904 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 471 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #