data_8E3N # _model_server_result.job_id H148IYHoYzlPAroKXUJaCg _model_server_result.datetime_utc '2024-12-23 06:14:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e3n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8E3N # _exptl.entry_id 8E3N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 695.753 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Rifamycin S' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8E3N _cell.length_a 91.893 _cell.length_b 91.893 _cell.length_c 85.991 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E3N _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C37 H45 N O12' _chem_comp.formula_weight 695.753 _chem_comp.id VA0 _chem_comp.mon_nstd_flag . _chem_comp.name 'Rifamycin S' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2S,12Z,14Z,16S,17S,18R,19R,20R,21S,22R,23S,24E)-5,17,19-trihydroxy-23-methoxy-2,4,12,16,18,20,22-heptamethyl-1,6,9,11-tetraoxo-1,2,6,9-tetrahydro-2,7-(epoxypentadeca[1,11,13]trienoimino)naphtho[2,1-b]furan-21-yl acetate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 C20 VA0 sing 358 n n C19 C18 VA0 doub 359 z n C19 C20 VA0 sing 360 n n C18 C17 VA0 sing 361 n n C20 C21 VA0 sing 362 n n O11 C15 VA0 doub 363 n n C17 C16 VA0 doub 364 z n C33 C24 VA0 sing 365 n n C21 C22 VA0 sing 366 n n C21 O10 VA0 sing 367 n n O12 C4 VA0 doub 368 n n C15 C16 VA0 sing 369 n n C15 N1 VA0 sing 370 n n C22 C32 VA0 sing 371 n n C22 C23 VA0 sing 372 n n C16 C30 VA0 sing 373 n n C3 C4 VA0 sing 374 n n C3 C2 VA0 doub 375 n n O4 C11 VA0 doub 376 n n C4 C10 VA0 sing 377 n n C24 C23 VA0 sing 378 n n C24 C25 VA0 sing 379 n n N1 C2 VA0 sing 380 n n C23 O9 VA0 sing 381 n n C2 C1 VA0 sing 382 n n C11 C5 VA0 sing 383 n n C11 C12 VA0 sing 384 n n C26 C25 VA0 sing 385 n n C26 C34 VA0 sing 386 n n C26 C27 VA0 sing 387 n n C25 O7 VA0 sing 388 n n O7 C35 VA0 sing 389 n n C10 C5 VA0 doub 390 n y C10 C9 VA0 sing 391 n y C28 C27 VA0 sing 392 n n C28 C29 VA0 doub 393 e n C5 C6 VA0 sing 394 n y C13 C12 VA0 sing 395 n n C27 O6 VA0 sing 396 n n O5 C12 VA0 sing 397 n n O5 C29 VA0 sing 398 n n C36 C35 VA0 sing 399 n n C12 O3 VA0 sing 400 n n C1 C9 VA0 sing 401 n n C1 O1 VA0 doub 402 n n C35 O8 VA0 doub 403 n n C9 C8 VA0 doub 404 n y C6 O3 VA0 sing 405 n n C6 C7 VA0 doub 406 n y O6 C37 VA0 sing 407 n n C8 C7 VA0 sing 408 n y C8 O2 VA0 sing 409 n n C7 C14 VA0 sing 410 n n C3 H1 VA0 sing 411 n n C13 H3 VA0 sing 412 n n C13 H4 VA0 sing 413 n n C13 H5 VA0 sing 414 n n C14 H6 VA0 sing 415 n n C14 H7 VA0 sing 416 n n C14 H8 VA0 sing 417 n n C17 H9 VA0 sing 418 n n C18 H10 VA0 sing 419 n n C19 H12 VA0 sing 420 n n C20 H14 VA0 sing 421 n n C21 H15 VA0 sing 422 n n C22 H16 VA0 sing 423 n n C23 H17 VA0 sing 424 n n C24 H18 VA0 sing 425 n n C25 H19 VA0 sing 426 n n C26 H20 VA0 sing 427 n n C27 H21 VA0 sing 428 n n C28 H22 VA0 sing 429 n n C29 H23 VA0 sing 430 n n C30 H24 VA0 sing 431 n n C30 H25 VA0 sing 432 n n C30 H26 VA0 sing 433 n n C31 H27 VA0 sing 434 n n C31 H28 VA0 sing 435 n n C31 H29 VA0 sing 436 n n C32 H30 VA0 sing 437 n n C32 H31 VA0 sing 438 n n C32 H32 VA0 sing 439 n n C33 H33 VA0 sing 440 n n C33 H34 VA0 sing 441 n n C33 H35 VA0 sing 442 n n C34 H36 VA0 sing 443 n n C34 H37 VA0 sing 444 n n C34 H38 VA0 sing 445 n n C36 H39 VA0 sing 446 n n C36 H40 VA0 sing 447 n n C36 H41 VA0 sing 448 n n C37 H42 VA0 sing 449 n n C37 H43 VA0 sing 450 n n C37 H44 VA0 sing 451 n n O2 H45 VA0 sing 452 n n O9 H46 VA0 sing 453 n n O10 H47 VA0 sing 454 n n N1 H2 VA0 sing 455 n n # _atom_sites.entry_id 8E3N _atom_sites.fract_transf_matrix[1][1] 0.010882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011629 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VA0 A 1 501 435 VA0 VA0 . C 3 HOH A 1 601 18 HOH HOH . C 3 HOH A 2 602 1 HOH HOH . C 3 HOH A 3 603 54 HOH HOH . C 3 HOH A 4 604 70 HOH HOH . C 3 HOH A 5 605 3 HOH HOH . C 3 HOH A 6 606 111 HOH HOH . C 3 HOH A 7 607 120 HOH HOH . C 3 HOH A 8 608 78 HOH HOH . C 3 HOH A 9 609 8 HOH HOH . C 3 HOH A 10 610 53 HOH HOH . C 3 HOH A 11 611 59 HOH HOH . C 3 HOH A 12 612 6 HOH HOH . C 3 HOH A 13 613 67 HOH HOH . C 3 HOH A 14 614 14 HOH HOH . C 3 HOH A 15 615 55 HOH HOH . C 3 HOH A 16 616 33 HOH HOH . C 3 HOH A 17 617 99 HOH HOH . C 3 HOH A 18 618 15 HOH HOH . C 3 HOH A 19 619 82 HOH HOH . C 3 HOH A 20 620 35 HOH HOH . C 3 HOH A 21 621 2 HOH HOH . C 3 HOH A 22 622 11 HOH HOH . C 3 HOH A 23 623 103 HOH HOH . C 3 HOH A 24 624 45 HOH HOH . C 3 HOH A 25 625 47 HOH HOH . C 3 HOH A 26 626 95 HOH HOH . C 3 HOH A 27 627 110 HOH HOH . C 3 HOH A 28 628 16 HOH HOH . C 3 HOH A 29 629 61 HOH HOH . C 3 HOH A 30 630 32 HOH HOH . C 3 HOH A 31 631 87 HOH HOH . C 3 HOH A 32 632 80 HOH HOH . C 3 HOH A 33 633 65 HOH HOH . C 3 HOH A 34 634 17 HOH HOH . C 3 HOH A 35 635 5 HOH HOH . C 3 HOH A 36 636 38 HOH HOH . C 3 HOH A 37 637 64 HOH HOH . C 3 HOH A 38 638 102 HOH HOH . C 3 HOH A 39 639 10 HOH HOH . C 3 HOH A 40 640 7 HOH HOH . C 3 HOH A 41 641 27 HOH HOH . C 3 HOH A 42 642 24 HOH HOH . C 3 HOH A 43 643 123 HOH HOH . C 3 HOH A 44 644 72 HOH HOH . C 3 HOH A 45 645 34 HOH HOH . C 3 HOH A 46 646 39 HOH HOH . C 3 HOH A 47 647 46 HOH HOH . C 3 HOH A 48 648 21 HOH HOH . C 3 HOH A 49 649 25 HOH HOH . C 3 HOH A 50 650 66 HOH HOH . C 3 HOH A 51 651 75 HOH HOH . C 3 HOH A 52 652 40 HOH HOH . C 3 HOH A 53 653 117 HOH HOH . C 3 HOH A 54 654 12 HOH HOH . C 3 HOH A 55 655 13 HOH HOH . C 3 HOH A 56 656 94 HOH HOH . C 3 HOH A 57 657 58 HOH HOH . C 3 HOH A 58 658 52 HOH HOH . C 3 HOH A 59 659 43 HOH HOH . C 3 HOH A 60 660 42 HOH HOH . C 3 HOH A 61 661 86 HOH HOH . C 3 HOH A 62 662 9 HOH HOH . C 3 HOH A 63 663 119 HOH HOH . C 3 HOH A 64 664 124 HOH HOH . C 3 HOH A 65 665 116 HOH HOH . C 3 HOH A 66 666 60 HOH HOH . C 3 HOH A 67 667 22 HOH HOH . C 3 HOH A 68 668 28 HOH HOH . C 3 HOH A 69 669 44 HOH HOH . C 3 HOH A 70 670 109 HOH HOH . C 3 HOH A 71 671 51 HOH HOH . C 3 HOH A 72 672 74 HOH HOH . C 3 HOH A 73 673 36 HOH HOH . C 3 HOH A 74 674 98 HOH HOH . C 3 HOH A 75 675 48 HOH HOH . C 3 HOH A 76 676 57 HOH HOH . C 3 HOH A 77 677 97 HOH HOH . C 3 HOH A 78 678 105 HOH HOH . C 3 HOH A 79 679 88 HOH HOH . C 3 HOH A 80 680 49 HOH HOH . C 3 HOH A 81 681 37 HOH HOH . C 3 HOH A 82 682 121 HOH HOH . C 3 HOH A 83 683 81 HOH HOH . C 3 HOH A 84 684 30 HOH HOH . C 3 HOH A 85 685 96 HOH HOH . C 3 HOH A 86 686 19 HOH HOH . C 3 HOH A 87 687 20 HOH HOH . C 3 HOH A 88 688 50 HOH HOH . C 3 HOH A 89 689 101 HOH HOH . C 3 HOH A 90 690 62 HOH HOH . C 3 HOH A 91 691 115 HOH HOH . C 3 HOH A 92 692 29 HOH HOH . C 3 HOH A 93 693 89 HOH HOH . C 3 HOH A 94 694 26 HOH HOH . C 3 HOH A 95 695 125 HOH HOH . C 3 HOH A 96 696 113 HOH HOH . C 3 HOH A 97 697 114 HOH HOH . C 3 HOH A 98 698 90 HOH HOH . C 3 HOH A 99 699 63 HOH HOH . C 3 HOH A 100 700 56 HOH HOH . C 3 HOH A 101 701 106 HOH HOH . C 3 HOH A 102 702 107 HOH HOH . C 3 HOH A 103 703 69 HOH HOH . C 3 HOH A 104 704 71 HOH HOH . C 3 HOH A 105 705 23 HOH HOH . C 3 HOH A 106 706 41 HOH HOH . C 3 HOH A 107 707 92 HOH HOH . C 3 HOH A 108 708 31 HOH HOH . C 3 HOH A 109 709 122 HOH HOH . C 3 HOH A 110 710 126 HOH HOH . C 3 HOH A 111 711 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VA0 . . . B 2 14.98 -14.664 -0.316 1 79.51 ? C1 VA0 501 A 1 HETATM 2 C C2 VA0 . . . B 2 14.986 -15.194 -1.719 1 76.21 ? C2 VA0 501 A 1 HETATM 3 C C3 VA0 . . . B 2 14.438 -14.468 -2.718 1 75.28 ? C3 VA0 501 A 1 HETATM 4 C C4 VA0 . . . B 2 13.68 -13.259 -2.436 1 73.86 ? C4 VA0 501 A 1 HETATM 5 C C5 VA0 . . . B 2 12.588 -11.775 -0.682 1 68.33 ? C5 VA0 501 A 1 HETATM 6 C C6 VA0 . . . B 2 12.394 -11.437 0.654 1 70.59 ? C6 VA0 501 A 1 HETATM 7 C C7 VA0 . . . B 2 13.026 -12.109 1.695 1 71.55 ? C7 VA0 501 A 1 HETATM 8 C C8 VA0 . . . B 2 13.878 -13.171 1.35 1 69.6 ? C8 VA0 501 A 1 HETATM 9 C C9 VA0 . . . B 2 14.088 -13.543 0.008 1 76.4 ? C9 VA0 501 A 1 HETATM 10 C C10 VA0 . . . B 2 13.444 -12.844 -1.029 1 72.24 ? C10 VA0 501 A 1 HETATM 11 C C11 VA0 . . . B 2 11.757 -10.845 -1.448 1 73.58 ? C11 VA0 501 A 1 HETATM 12 C C12 VA0 . . . B 2 10.976 -10.011 -0.439 1 70.33 ? C12 VA0 501 A 1 HETATM 13 C C13 VA0 . . . B 2 11.132 -8.533 -0.665 1 64.86 ? C13 VA0 501 A 1 HETATM 14 C C14 VA0 . . . B 2 12.793 -11.706 3.126 1 63.47 ? C14 VA0 501 A 1 HETATM 15 C C15 VA0 . . . B 2 15.551 -17.207 -3.007 1 79.34 ? C15 VA0 501 A 1 HETATM 16 C C16 VA0 . . . B 2 15.417 -18.614 -2.82 1 75.3 ? C16 VA0 501 A 1 HETATM 17 C C17 VA0 . . . B 2 14.698 -19.383 -3.655 1 67.37 ? C17 VA0 501 A 1 HETATM 18 C C18 VA0 . . . B 2 14.042 -19.016 -4.884 1 63.36 ? C18 VA0 501 A 1 HETATM 19 C C19 VA0 . . . B 2 12.861 -19.464 -5.287 1 58.98 ? C19 VA0 501 A 1 HETATM 20 C C20 VA0 . . . B 2 11.739 -20.123 -4.529 1 55.28 ? C20 VA0 501 A 1 HETATM 21 C C21 VA0 . . . B 2 11.15 -19.227 -3.426 1 57.7 ? C21 VA0 501 A 1 HETATM 22 C C22 VA0 . . . B 2 9.799 -19.69 -2.852 1 53.25 ? C22 VA0 501 A 1 HETATM 23 C C23 VA0 . . . B 2 9.201 -18.667 -1.865 1 52.96 ? C23 VA0 501 A 1 HETATM 24 C C24 VA0 . . . B 2 9.143 -17.21 -2.367 1 54.9 ? C24 VA0 501 A 1 HETATM 25 C C25 VA0 . . . B 2 8.638 -16.282 -1.248 1 56.7 ? C25 VA0 501 A 1 HETATM 26 C C26 VA0 . . . B 2 9.058 -14.809 -1.34 1 61.6 ? C26 VA0 501 A 1 HETATM 27 C C27 VA0 . . . B 2 8.114 -13.842 -0.591 1 60.76 ? C27 VA0 501 A 1 HETATM 28 C C28 VA0 . . . B 2 8.289 -12.361 -0.8 1 60.62 ? C28 VA0 501 A 1 HETATM 29 C C29 VA0 . . . B 2 9.309 -11.671 -0.319 1 65.98 ? C29 VA0 501 A 1 HETATM 30 C C30 VA0 . . . B 2 16.061 -19.139 -1.567 1 74.04 ? C30 VA0 501 A 1 HETATM 31 C C31 VA0 . . . B 2 10.673 -20.526 -5.538 1 51.84 ? C31 VA0 501 A 1 HETATM 32 C C32 VA0 . . . B 2 9.93 -21.066 -2.184 1 49.34 ? C32 VA0 501 A 1 HETATM 33 C C33 VA0 . . . B 2 8.252 -17.088 -3.61 1 56.35 ? C33 VA0 501 A 1 HETATM 34 C C34 VA0 . . . B 2 10.513 -14.654 -0.925 1 66.9 ? C34 VA0 501 A 1 HETATM 35 C C35 VA0 . . . B 2 6.562 -17.075 -0.314 1 56.42 ? C35 VA0 501 A 1 HETATM 36 C C36 VA0 . . . B 2 5.085 -17.008 -0.471 1 55.24 ? C36 VA0 501 A 1 HETATM 37 C C37 VA0 . . . B 2 6.7 -13.845 1.325 1 61.67 ? C37 VA0 501 A 1 HETATM 38 N N1 VA0 . . . B 2 15.556 -16.461 -1.877 1 81.36 ? N1 VA0 501 A 1 HETATM 39 O O1 VA0 . . . B 2 15.683 -15.229 0.563 1 82.41 ? O1 VA0 501 A 1 HETATM 40 O O2 VA0 . . . B 2 14.499 -13.842 2.342 1 74.19 ? O2 VA0 501 A 1 HETATM 41 O O3 VA0 . . . B 2 11.545 -10.384 0.867 1 69.46 ? O3 VA0 501 A 1 HETATM 42 O O4 VA0 . . . B 2 11.614 -10.727 -2.65 1 73 ? O4 VA0 501 A 1 HETATM 43 O O5 VA0 . . . B 2 9.598 -10.32 -0.473 1 68.27 ? O5 VA0 501 A 1 HETATM 44 O O6 VA0 . . . B 2 7.99 -14.16 0.814 1 60.7 ? O6 VA0 501 A 1 HETATM 45 O O7 VA0 . . . B 2 7.184 -16.328 -1.245 1 57.66 ? O7 VA0 501 A 1 HETATM 46 O O8 VA0 . . . B 2 7.148 -17.693 0.53 1 57.54 ? O8 VA0 501 A 1 HETATM 47 O O9 VA0 . . . B 2 9.942 -18.702 -0.651 1 54.86 ? O9 VA0 501 A 1 HETATM 48 O O10 VA0 . . . B 2 12.095 -19.104 -2.366 1 60.35 ? O10 VA0 501 A 1 HETATM 49 O O11 VA0 . . . B 2 15.613 -16.741 -4.151 1 77.21 ? O11 VA0 501 A 1 HETATM 50 O O12 VA0 . . . B 2 13.23 -12.605 -3.371 1 65.06 ? O12 VA0 501 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 56 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 50 #