data_8E4F # _model_server_result.job_id RDN6BnRKO-NDrZXISRQJMA _model_server_result.datetime_utc '2025-03-06 08:09:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8E4F # _exptl.entry_id 8E4F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8E4F _cell.length_a 133.877 _cell.length_b 133.877 _cell.length_c 75.876 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 94 A GLU 84 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc2 A O ASN 96 A ASN 86 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? metalc ? metalc3 A O VAL 99 A VAL 89 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc4 D NA NA . A NA 303 1_555 G O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.17 ? metalc ? metalc5 D NA NA . A NA 303 1_555 G O HOH . A HOH 423 12_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.17 ? metalc ? metalc6 F NA NA . A NA 305 1_555 G O HOH . A HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc7 F NA NA . A NA 305 1_555 G O HOH . A HOH 476 11_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 290 n n PA O2A NAP sing 291 n n PA O5B NAP sing 292 n n PA O3 NAP sing 293 n n O2A HOA2 NAP sing 294 n n O5B C5B NAP sing 295 n n C5B C4B NAP sing 296 n n C5B H51A NAP sing 297 n n C5B H52A NAP sing 298 n n C4B O4B NAP sing 299 n n C4B C3B NAP sing 300 n n C4B H4B NAP sing 301 n n O4B C1B NAP sing 302 n n C3B O3B NAP sing 303 n n C3B C2B NAP sing 304 n n C3B H3B NAP sing 305 n n O3B HO3A NAP sing 306 n n C2B O2B NAP sing 307 n n C2B C1B NAP sing 308 n n C2B H2B NAP sing 309 n n O2B P2B NAP sing 310 n n C1B N9A NAP sing 311 n n C1B H1B NAP sing 312 n n N9A C8A NAP sing 313 n y N9A C4A NAP sing 314 n y C8A N7A NAP doub 315 n y C8A H8A NAP sing 316 n n N7A C5A NAP sing 317 n y C5A C6A NAP sing 318 n y C5A C4A NAP doub 319 n y C6A N6A NAP sing 320 n n C6A N1A NAP doub 321 n y N6A H61A NAP sing 322 n n N6A H62A NAP sing 323 n n N1A C2A NAP sing 324 n y C2A N3A NAP doub 325 n y C2A H2A NAP sing 326 n n N3A C4A NAP sing 327 n y O3 PN NAP sing 328 n n PN O1N NAP doub 329 n n PN O2N NAP sing 330 n n PN O5D NAP sing 331 n n O5D C5D NAP sing 332 n n C5D C4D NAP sing 333 n n C5D H51N NAP sing 334 n n C5D H52N NAP sing 335 n n C4D O4D NAP sing 336 n n C4D C3D NAP sing 337 n n C4D H4D NAP sing 338 n n O4D C1D NAP sing 339 n n C3D O3D NAP sing 340 n n C3D C2D NAP sing 341 n n C3D H3D NAP sing 342 n n O3D HO3N NAP sing 343 n n C2D O2D NAP sing 344 n n C2D C1D NAP sing 345 n n C2D H2D NAP sing 346 n n O2D HO2N NAP sing 347 n n C1D N1N NAP sing 348 n n C1D H1D NAP sing 349 n n N1N C2N NAP sing 350 n y N1N C6N NAP doub 351 n y C2N C3N NAP doub 352 n y C2N H2N NAP sing 353 n n C3N C7N NAP sing 354 n n C3N C4N NAP sing 355 n y C7N O7N NAP doub 356 n n C7N N7N NAP sing 357 n n N7N H71N NAP sing 358 n n N7N H72N NAP sing 359 n n C4N C5N NAP doub 360 n y C4N H4N NAP sing 361 n n C5N C6N NAP sing 362 n y C5N H5N NAP sing 363 n n C6N H6N NAP sing 364 n n P2B O1X NAP doub 365 n n P2B O2X NAP sing 366 n n P2B O3X NAP sing 367 n n O2X HOP2 NAP sing 368 n n O3X HOP3 NAP sing 369 n n # _atom_sites.entry_id 8E4F _atom_sites.fract_transf_matrix[1][1] 0.00747 _atom_sites.fract_transf_matrix[1][2] 0.004313 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 301 301 NAP NDP . C 3 FOL A 1 302 1188 FOL FOL . D 4 NA A 1 303 1 NA NA . E 4 NA A 1 304 2 NA NA . F 4 NA A 1 305 3 NA NA . G 5 HOH A 1 401 27 HOH HOH . G 5 HOH A 2 402 18 HOH HOH . G 5 HOH A 3 403 14 HOH HOH . G 5 HOH A 4 404 107 HOH HOH . G 5 HOH A 5 405 26 HOH HOH . G 5 HOH A 6 406 9 HOH HOH . G 5 HOH A 7 407 4 HOH HOH . G 5 HOH A 8 408 51 HOH HOH . G 5 HOH A 9 409 59 HOH HOH . G 5 HOH A 10 410 25 HOH HOH . G 5 HOH A 11 411 118 HOH HOH . G 5 HOH A 12 412 106 HOH HOH . G 5 HOH A 13 413 97 HOH HOH . G 5 HOH A 14 414 39 HOH HOH . G 5 HOH A 15 415 80 HOH HOH . G 5 HOH A 16 416 32 HOH HOH . G 5 HOH A 17 417 24 HOH HOH . G 5 HOH A 18 418 55 HOH HOH . G 5 HOH A 19 419 15 HOH HOH . G 5 HOH A 20 420 34 HOH HOH . G 5 HOH A 21 421 21 HOH HOH . G 5 HOH A 22 422 12 HOH HOH . G 5 HOH A 23 423 5 HOH HOH . G 5 HOH A 24 424 87 HOH HOH . G 5 HOH A 25 425 22 HOH HOH . G 5 HOH A 26 426 83 HOH HOH . G 5 HOH A 27 427 126 HOH HOH . G 5 HOH A 28 428 13 HOH HOH . G 5 HOH A 29 429 28 HOH HOH . G 5 HOH A 30 430 2 HOH HOH . G 5 HOH A 31 431 36 HOH HOH . G 5 HOH A 32 432 117 HOH HOH . G 5 HOH A 33 433 66 HOH HOH . G 5 HOH A 34 434 30 HOH HOH . G 5 HOH A 35 435 35 HOH HOH . G 5 HOH A 36 436 104 HOH HOH . G 5 HOH A 37 437 40 HOH HOH . G 5 HOH A 38 438 111 HOH HOH . G 5 HOH A 39 439 119 HOH HOH . G 5 HOH A 40 440 76 HOH HOH . G 5 HOH A 41 441 127 HOH HOH . G 5 HOH A 42 442 31 HOH HOH . G 5 HOH A 43 443 95 HOH HOH . G 5 HOH A 44 444 54 HOH HOH . G 5 HOH A 45 445 42 HOH HOH . G 5 HOH A 46 446 56 HOH HOH . G 5 HOH A 47 447 90 HOH HOH . G 5 HOH A 48 448 113 HOH HOH . G 5 HOH A 49 449 79 HOH HOH . G 5 HOH A 50 450 110 HOH HOH . G 5 HOH A 51 451 88 HOH HOH . G 5 HOH A 52 452 91 HOH HOH . G 5 HOH A 53 453 109 HOH HOH . G 5 HOH A 54 454 99 HOH HOH . G 5 HOH A 55 455 74 HOH HOH . G 5 HOH A 56 456 82 HOH HOH . G 5 HOH A 57 457 78 HOH HOH . G 5 HOH A 58 458 48 HOH HOH . G 5 HOH A 59 459 29 HOH HOH . G 5 HOH A 60 460 6 HOH HOH . G 5 HOH A 61 461 108 HOH HOH . G 5 HOH A 62 462 73 HOH HOH . G 5 HOH A 63 463 125 HOH HOH . G 5 HOH A 64 464 98 HOH HOH . G 5 HOH A 65 465 70 HOH HOH . G 5 HOH A 66 466 60 HOH HOH . G 5 HOH A 67 467 103 HOH HOH . G 5 HOH A 68 468 65 HOH HOH . G 5 HOH A 69 469 94 HOH HOH . G 5 HOH A 70 470 77 HOH HOH . G 5 HOH A 71 471 86 HOH HOH . G 5 HOH A 72 472 112 HOH HOH . G 5 HOH A 73 473 84 HOH HOH . G 5 HOH A 74 474 89 HOH HOH . G 5 HOH A 75 475 44 HOH HOH . G 5 HOH A 76 476 96 HOH HOH . G 5 HOH A 77 477 63 HOH HOH . G 5 HOH A 78 478 114 HOH HOH . G 5 HOH A 79 479 69 HOH HOH . G 5 HOH A 80 480 105 HOH HOH . G 5 HOH A 81 481 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 56.877 26.488 8.373 1 23.38 ? PA NAP 301 A 1 HETATM 2 O O1A NAP . . . B 2 56.61 26.145 9.797 1 27.48 ? O1A NAP 301 A 1 HETATM 3 O O2A NAP . . . B 2 56.787 25.466 7.28 1 36.1 ? O2A NAP 301 A 1 HETATM 4 O O5B NAP . . . B 2 55.94 27.759 7.963 1 41.97 ? O5B NAP 301 A 1 HETATM 5 C C5B NAP . . . B 2 56.165 28.699 8.968 1 17.15 ? C5B NAP 301 A 1 HETATM 6 C C4B NAP . . . B 2 55.05 29.697 8.85 1 28.21 ? C4B NAP 301 A 1 HETATM 7 O O4B NAP . . . B 2 53.823 29.054 9.129 1 30.89 ? O4B NAP 301 A 1 HETATM 8 C C3B NAP . . . B 2 55.23 30.822 9.867 1 27.57 ? C3B NAP 301 A 1 HETATM 9 O O3B NAP . . . B 2 56.108 31.779 9.371 1 39.95 ? O3B NAP 301 A 1 HETATM 10 C C2B NAP . . . B 2 53.797 31.377 9.848 1 28.9 ? C2B NAP 301 A 1 HETATM 11 O O2B NAP . . . B 2 53.496 32.02 8.731 1 31.86 ? O2B NAP 301 A 1 HETATM 12 C C1B NAP . . . B 2 52.993 30.019 9.786 1 30.7 ? C1B NAP 301 A 1 HETATM 13 N N9A NAP . . . B 2 52.606 29.48 11.089 1 25.91 ? N9A NAP 301 A 1 HETATM 14 C C8A NAP . . . B 2 53.202 28.436 11.814 1 27.5 ? C8A NAP 301 A 1 HETATM 15 N N7A NAP . . . B 2 52.58 28.179 12.982 1 35.77 ? N7A NAP 301 A 1 HETATM 16 C C5A NAP . . . B 2 51.52 29.104 13.005 1 32.54 ? C5A NAP 301 A 1 HETATM 17 C C6A NAP . . . B 2 50.506 29.352 13.944 1 38.67 ? C6A NAP 301 A 1 HETATM 18 N N6A NAP . . . B 2 50.433 28.611 15.106 1 32.54 ? N6A NAP 301 A 1 HETATM 19 N N1A NAP . . . B 2 49.567 30.326 13.74 1 38.43 ? N1A NAP 301 A 1 HETATM 20 C C2A NAP . . . B 2 49.704 31.024 12.563 1 28.11 ? C2A NAP 301 A 1 HETATM 21 N N3A NAP . . . B 2 50.604 30.91 11.577 1 29.88 ? N3A NAP 301 A 1 HETATM 22 C C4A NAP . . . B 2 51.524 29.917 11.828 1 33.75 ? C4A NAP 301 A 1 HETATM 23 O O3 NAP . . . B 2 58.438 27.057 8.405 1 35.74 ? O3 NAP 301 A 1 HETATM 24 P PN NAP . . . B 2 59.466 25.943 8.899 1 25.34 ? PN NAP 301 A 1 HETATM 25 O O1N NAP . . . B 2 60.817 26.44 8.573 1 40.5 ? O1N NAP 301 A 1 HETATM 26 O O2N NAP . . . B 2 59.145 25.307 10.234 1 39.1 ? O2N NAP 301 A 1 HETATM 27 O O5D NAP . . . B 2 59.381 24.539 7.832 1 27.7 ? O5D NAP 301 A 1 HETATM 28 C C5D NAP . . . B 2 59.886 24.95 6.623 1 30.89 ? C5D NAP 301 A 1 HETATM 29 C C4D NAP . . . B 2 61.146 24.148 6.307 1 22.37 ? C4D NAP 301 A 1 HETATM 30 O O4D NAP . . . B 2 60.997 22.772 6.71 1 37.16 ? O4D NAP 301 A 1 HETATM 31 C C3D NAP . . . B 2 61.339 24.156 4.774 1 36.46 ? C3D NAP 301 A 1 HETATM 32 O O3D NAP . . . B 2 62.701 24.248 4.515 1 29.98 ? O3D NAP 301 A 1 HETATM 33 C C2D NAP . . . B 2 60.784 22.795 4.358 1 36.99 ? C2D NAP 301 A 1 HETATM 34 O O2D NAP . . . B 2 61.426 22.274 3.239 1 30.94 ? O2D NAP 301 A 1 HETATM 35 C C1D NAP . . . B 2 61.171 21.929 5.582 1 28.92 ? C1D NAP 301 A 1 HETATM 36 N N1N NAP . . . B 2 60.241 20.803 5.713 1 29.18 ? N1N NAP 301 A 1 HETATM 37 C C2N NAP . . . B 2 60.684 19.51 5.538 1 32.45 ? C2N NAP 301 A 1 HETATM 38 C C3N NAP . . . B 2 59.913 18.462 5.939 1 33.4 ? C3N NAP 301 A 1 HETATM 39 C C7N NAP . . . B 2 60.455 17.13 5.733 1 31.82 ? C7N NAP 301 A 1 HETATM 40 O O7N NAP . . . B 2 59.797 16.085 5.828 1 28.58 ? O7N NAP 301 A 1 HETATM 41 N N7N NAP . . . B 2 61.801 17.043 5.427 1 22.94 ? N7N NAP 301 A 1 HETATM 42 C C4N NAP . . . B 2 58.581 18.651 6.572 1 31.72 ? C4N NAP 301 A 1 HETATM 43 C C5N NAP . . . B 2 58.102 20.046 6.454 1 33.03 ? C5N NAP 301 A 1 HETATM 44 C C6N NAP . . . B 2 58.902 21.035 6.047 1 34.24 ? C6N NAP 301 A 1 HETATM 45 P P2B NAP . . . B 2 53.614 33.817 8.855 1 27.88 ? P2B NAP 301 A 1 HETATM 46 O O1X NAP . . . B 2 55.107 33.897 8.948 1 31.4 ? O1X NAP 301 A 1 HETATM 47 O O2X NAP . . . B 2 52.802 34.136 10.113 1 35.65 ? O2X NAP 301 A 1 HETATM 48 O O3X NAP . . . B 2 52.986 34.131 7.526 1 28.22 ? O3X NAP 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #