data_8E4F # _model_server_result.job_id 5eMcxB_8g0cm2qGpxMcbMA _model_server_result.datetime_utc '2025-03-06 07:48:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 8E4F # _exptl.entry_id 8E4F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8E4F _cell.length_a 133.877 _cell.length_b 133.877 _cell.length_c 75.876 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 94 A GLU 84 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc2 A O ASN 96 A ASN 86 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? metalc ? metalc3 A O VAL 99 A VAL 89 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc4 D NA NA . A NA 303 1_555 G O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.17 ? metalc ? metalc5 D NA NA . A NA 303 1_555 G O HOH . A HOH 423 12_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.17 ? metalc ? metalc6 F NA NA . A NA 305 1_555 G O HOH . A HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc7 F NA NA . A NA 305 1_555 G O HOH . A HOH 476 11_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8E4F _atom_sites.fract_transf_matrix[1][1] 0.00747 _atom_sites.fract_transf_matrix[1][2] 0.004313 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 301 301 NAP NDP . C 3 FOL A 1 302 1188 FOL FOL . D 4 NA A 1 303 1 NA NA . E 4 NA A 1 304 2 NA NA . F 4 NA A 1 305 3 NA NA . G 5 HOH A 1 401 27 HOH HOH . G 5 HOH A 2 402 18 HOH HOH . G 5 HOH A 3 403 14 HOH HOH . G 5 HOH A 4 404 107 HOH HOH . G 5 HOH A 5 405 26 HOH HOH . G 5 HOH A 6 406 9 HOH HOH . G 5 HOH A 7 407 4 HOH HOH . G 5 HOH A 8 408 51 HOH HOH . G 5 HOH A 9 409 59 HOH HOH . G 5 HOH A 10 410 25 HOH HOH . G 5 HOH A 11 411 118 HOH HOH . G 5 HOH A 12 412 106 HOH HOH . G 5 HOH A 13 413 97 HOH HOH . G 5 HOH A 14 414 39 HOH HOH . G 5 HOH A 15 415 80 HOH HOH . G 5 HOH A 16 416 32 HOH HOH . G 5 HOH A 17 417 24 HOH HOH . G 5 HOH A 18 418 55 HOH HOH . G 5 HOH A 19 419 15 HOH HOH . G 5 HOH A 20 420 34 HOH HOH . G 5 HOH A 21 421 21 HOH HOH . G 5 HOH A 22 422 12 HOH HOH . G 5 HOH A 23 423 5 HOH HOH . G 5 HOH A 24 424 87 HOH HOH . G 5 HOH A 25 425 22 HOH HOH . G 5 HOH A 26 426 83 HOH HOH . G 5 HOH A 27 427 126 HOH HOH . G 5 HOH A 28 428 13 HOH HOH . G 5 HOH A 29 429 28 HOH HOH . G 5 HOH A 30 430 2 HOH HOH . G 5 HOH A 31 431 36 HOH HOH . G 5 HOH A 32 432 117 HOH HOH . G 5 HOH A 33 433 66 HOH HOH . G 5 HOH A 34 434 30 HOH HOH . G 5 HOH A 35 435 35 HOH HOH . G 5 HOH A 36 436 104 HOH HOH . G 5 HOH A 37 437 40 HOH HOH . G 5 HOH A 38 438 111 HOH HOH . G 5 HOH A 39 439 119 HOH HOH . G 5 HOH A 40 440 76 HOH HOH . G 5 HOH A 41 441 127 HOH HOH . G 5 HOH A 42 442 31 HOH HOH . G 5 HOH A 43 443 95 HOH HOH . G 5 HOH A 44 444 54 HOH HOH . G 5 HOH A 45 445 42 HOH HOH . G 5 HOH A 46 446 56 HOH HOH . G 5 HOH A 47 447 90 HOH HOH . G 5 HOH A 48 448 113 HOH HOH . G 5 HOH A 49 449 79 HOH HOH . G 5 HOH A 50 450 110 HOH HOH . G 5 HOH A 51 451 88 HOH HOH . G 5 HOH A 52 452 91 HOH HOH . G 5 HOH A 53 453 109 HOH HOH . G 5 HOH A 54 454 99 HOH HOH . G 5 HOH A 55 455 74 HOH HOH . G 5 HOH A 56 456 82 HOH HOH . G 5 HOH A 57 457 78 HOH HOH . G 5 HOH A 58 458 48 HOH HOH . G 5 HOH A 59 459 29 HOH HOH . G 5 HOH A 60 460 6 HOH HOH . G 5 HOH A 61 461 108 HOH HOH . G 5 HOH A 62 462 73 HOH HOH . G 5 HOH A 63 463 125 HOH HOH . G 5 HOH A 64 464 98 HOH HOH . G 5 HOH A 65 465 70 HOH HOH . G 5 HOH A 66 466 60 HOH HOH . G 5 HOH A 67 467 103 HOH HOH . G 5 HOH A 68 468 65 HOH HOH . G 5 HOH A 69 469 94 HOH HOH . G 5 HOH A 70 470 77 HOH HOH . G 5 HOH A 71 471 86 HOH HOH . G 5 HOH A 72 472 112 HOH HOH . G 5 HOH A 73 473 84 HOH HOH . G 5 HOH A 74 474 89 HOH HOH . G 5 HOH A 75 475 44 HOH HOH . G 5 HOH A 76 476 96 HOH HOH . G 5 HOH A 77 477 63 HOH HOH . G 5 HOH A 78 478 114 HOH HOH . G 5 HOH A 79 479 69 HOH HOH . G 5 HOH A 80 480 105 HOH HOH . G 5 HOH A 81 481 115 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 39.665 _atom_site.Cartn_y 29.651 _atom_site.Cartn_z 0.179 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 304 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #