data_8E4L
#
_model_server_result.job_id            G_Rv6kj2BCVPYZ6jMBcutQ 
_model_server_result.datetime_utc      '2025-09-06 22:43:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8e4l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":1203}' 
#
_entry.id    8E4L 
#
_exptl.entry_id    8E4L 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              260.396 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            nonyl(oxo)di(propan-2-yl)-lambda~5~-phosphane 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8E4L 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8E4L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 K N N 
? 4 O N N 
? 4 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 304 A CYS 303 1_555 A SG CYS 327 A CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? 
disulf ? disulf2 B SG CYS 304 B CYS 303 1_555 B SG CYS 327 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? 
disulf ? disulf3 C SG CYS 304 C CYS 303 1_555 C SG CYS 327 C CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? 
disulf ? disulf4 D SG CYS 304 D CYS 303 1_555 D SG CYS 327 D CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? 
metalc ? metalc1 A OE2 GLU 783 A GLU 782 1_555 E CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc2 A OE1 GLN 786 A GLN 785 1_555 E CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc3 A OD1 ASN 800 A ASN 799 1_555 E CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
metalc ? metalc4 A OD2 ASP 803 A ASP 802 1_555 E CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? 
metalc ? metalc5 B OE2 GLU 783 B GLU 782 1_555 I CA CA . B CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc6 B OE1 GLN 786 B GLN 785 1_555 I CA CA . B CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc7 B OD1 ASN 800 B ASN 799 1_555 I CA CA . B CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
metalc ? metalc8 B OD2 ASP 803 B ASP 802 1_555 I CA CA . B CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? 
metalc ? metalc9 C OE2 GLU 783 C GLU 782 1_555 M CA CA . C CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc10 C OE1 GLN 786 C GLN 785 1_555 M CA CA . C CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc11 C OD1 ASN 800 C ASN 799 1_555 M CA CA . C CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
metalc ? metalc12 C OD2 ASP 803 C ASP 802 1_555 M CA CA . C CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.083 ? 
metalc ? metalc13 D OE2 GLU 783 D GLU 782 1_555 Q CA CA . D CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc14 D OE1 GLN 786 D GLN 785 1_555 Q CA CA . D CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
metalc ? metalc15 D OD1 ASN 800 D ASN 799 1_555 Q CA CA . D CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
metalc ? metalc16 D OD2 ASP 803 D ASP 802 1_555 Q CA CA . D CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.083 ? 
#
_chem_comp.formula           'C15 H33 O P' 
_chem_comp.formula_weight    260.396 
_chem_comp.id                ULO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              nonyl(oxo)di(propan-2-yl)-lambda~5~-phosphane 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C17 C15 ULO sing 462 n n 
O11 P10 ULO doub 463 n n 
C15 P10 ULO sing 464 n n 
C15 C16 ULO sing 465 n n 
C14 C12 ULO sing 466 n n 
P10 C12 ULO sing 467 n n 
P10 C09 ULO sing 468 n n 
C13 C12 ULO sing 469 n n 
C09 C08 ULO sing 470 n n 
C08 C07 ULO sing 471 n n 
C07 C06 ULO sing 472 n n 
C06 C05 ULO sing 473 n n 
C04 C05 ULO sing 474 n n 
C04 C03 ULO sing 475 n n 
C02 C03 ULO sing 476 n n 
C02 C01 ULO sing 477 n n 
C01 H013 ULO sing 478 n n 
C01 H011 ULO sing 479 n n 
C01 H012 ULO sing 480 n n 
C02 H021 ULO sing 481 n n 
C02 H022 ULO sing 482 n n 
C03 H031 ULO sing 483 n n 
C03 H032 ULO sing 484 n n 
C04 H042 ULO sing 485 n n 
C04 H041 ULO sing 486 n n 
C05 H051 ULO sing 487 n n 
C05 H052 ULO sing 488 n n 
C06 H062 ULO sing 489 n n 
C06 H061 ULO sing 490 n n 
C07 H072 ULO sing 491 n n 
C07 H071 ULO sing 492 n n 
C08 H082 ULO sing 493 n n 
C08 H081 ULO sing 494 n n 
C09 H092 ULO sing 495 n n 
C09 H091 ULO sing 496 n n 
C12 H121 ULO sing 497 n n 
C13 H133 ULO sing 498 n n 
C13 H132 ULO sing 499 n n 
C13 H131 ULO sing 500 n n 
C14 H142 ULO sing 501 n n 
C14 H143 ULO sing 502 n n 
C14 H141 ULO sing 503 n n 
C15 H151 ULO sing 504 n n 
C16 H163 ULO sing 505 n n 
C16 H162 ULO sing 506 n n 
C16 H161 ULO sing 507 n n 
C17 H173 ULO sing 508 n n 
C17 H172 ULO sing 509 n n 
C17 H171 ULO sing 510 n n 
#
_atom_sites.entry_id                     8E4L 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CA A 1 1201 1411 CA CA . 
F 3 UL9 A 1 1202 1412 UL9 ATC . 
G 4 ULO A 1 1203 1413 ULO C3 . 
H 5 PIO A 1 1204 1414 PIO PIO . 
I 2 CA B 1 1201 1411 CA CA . 
J 3 UL9 B 1 1202 1412 UL9 ATC . 
K 4 ULO B 1 1203 1413 ULO C3 . 
L 5 PIO B 1 1204 1414 PIO PIO . 
M 2 CA C 1 1201 1411 CA CA . 
N 3 UL9 C 1 1202 1412 UL9 ATC . 
O 4 ULO C 1 1203 1413 ULO C3 . 
P 5 PIO C 1 1204 1414 PIO PIO . 
Q 2 CA D 1 1201 1411 CA CA . 
R 3 UL9 D 1 1202 1412 UL9 ATC . 
S 4 ULO D 1 1203 1413 ULO C3 . 
T 5 PIO D 1 1204 1414 PIO PIO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 ULO . . . S 4 132.676 177.327 175.927 1 123.38 ? C01 ULO 1203 D 1 
HETATM 2 C C02 ULO . . . S 4 132.725 176.247 174.851 1 123.38 ? C02 ULO 1203 D 1 
HETATM 3 C C03 ULO . . . S 4 133.822 175.24 175.192 1 123.38 ? C03 ULO 1203 D 1 
HETATM 4 C C04 ULO . . . S 4 133.959 174.237 174.048 1 123.38 ? C04 ULO 1203 D 1 
HETATM 5 C C05 ULO . . . S 4 135.248 173.434 174.214 1 123.38 ? C05 ULO 1203 D 1 
HETATM 6 C C06 ULO . . . S 4 135.867 173.128 172.85 1 123.38 ? C06 ULO 1203 D 1 
HETATM 7 C C07 ULO . . . S 4 137.191 173.877 172.752 1 123.38 ? C07 ULO 1203 D 1 
HETATM 8 C C08 ULO . . . S 4 137.814 173.685 171.373 1 123.38 ? C08 ULO 1203 D 1 
HETATM 9 C C09 ULO . . . S 4 139.033 174.596 171.268 1 123.38 ? C09 ULO 1203 D 1 
HETATM 10 C C12 ULO . . . S 4 140.847 172.243 170.732 1 123.38 ? C12 ULO 1203 D 1 
HETATM 11 C C13 ULO . . . S 4 142.365 172.131 170.616 1 123.38 ? C13 ULO 1203 D 1 
HETATM 12 C C14 ULO . . . S 4 140.195 171.108 169.95 1 123.38 ? C14 ULO 1203 D 1 
HETATM 13 C C15 ULO . . . S 4 141.667 175.078 169.902 1 123.38 ? C15 ULO 1203 D 1 
HETATM 14 C C16 ULO . . . S 4 141.737 175.936 171.163 1 123.38 ? C16 ULO 1203 D 1 
HETATM 15 C C17 ULO . . . S 4 141.418 175.978 168.696 1 123.38 ? C17 ULO 1203 D 1 
HETATM 16 O O11 ULO . . . S 4 139.614 173.681 168.772 1 123.38 ? O11 ULO 1203 D 1 
HETATM 17 P P10 ULO . . . S 4 140.256 173.879 170.068 1 123.38 ? P10 ULO 1203 D 1 
HETATM 18 H H013 ULO . . . S 4 131.94 177.933 175.744 1 123.38 ? H013 ULO 1203 D 1 
HETATM 19 H H011 ULO . . . S 4 133.511 177.821 175.928 1 123.38 ? H011 ULO 1203 D 1 
HETATM 20 H H012 ULO . . . S 4 132.545 176.913 176.795 1 123.38 ? H012 ULO 1203 D 1 
HETATM 21 H H021 ULO . . . S 4 131.869 175.792 174.807 1 123.38 ? H021 ULO 1203 D 1 
HETATM 22 H H022 ULO . . . S 4 132.918 176.655 173.992 1 123.38 ? H022 ULO 1203 D 1 
HETATM 23 H H031 ULO . . . S 4 134.662 175.706 175.319 1 123.38 ? H031 ULO 1203 D 1 
HETATM 24 H H032 ULO . . . S 4 133.586 174.769 176.006 1 123.38 ? H032 ULO 1203 D 1 
HETATM 25 H H042 ULO . . . S 4 133.204 173.631 174.069 1 123.38 ? H042 ULO 1203 D 1 
HETATM 26 H H041 ULO . . . S 4 133.969 174.715 173.205 1 123.38 ? H041 ULO 1203 D 1 
HETATM 27 H H051 ULO . . . S 4 135.88 173.941 174.744 1 123.38 ? H051 ULO 1203 D 1 
HETATM 28 H H052 ULO . . . S 4 135.047 172.6 174.665 1 123.38 ? H052 ULO 1203 D 1 
HETATM 29 H H062 ULO . . . S 4 136.027 172.175 172.774 1 123.38 ? H062 ULO 1203 D 1 
HETATM 30 H H061 ULO . . . S 4 135.275 173.413 172.137 1 123.38 ? H061 ULO 1203 D 1 
HETATM 31 H H072 ULO . . . S 4 137.034 174.823 172.901 1 123.38 ? H072 ULO 1203 D 1 
HETATM 32 H H071 ULO . . . S 4 137.8 173.543 173.428 1 123.38 ? H071 ULO 1203 D 1 
HETATM 33 H H082 ULO . . . S 4 138.087 172.761 171.261 1 123.38 ? H082 ULO 1203 D 1 
HETATM 34 H H081 ULO . . . S 4 137.17 173.921 170.687 1 123.38 ? H081 ULO 1203 D 1 
HETATM 35 H H092 ULO . . . S 4 138.755 175.472 170.958 1 123.38 ? H092 ULO 1203 D 1 
HETATM 36 H H091 ULO . . . S 4 139.448 174.679 172.14 1 123.38 ? H091 ULO 1203 D 1 
HETATM 37 H H121 ULO . . . S 4 140.595 172.171 171.665 1 123.38 ? H121 ULO 1203 D 1 
HETATM 38 H H133 ULO . . . S 4 142.624 172.233 169.687 1 123.38 ? H133 ULO 1203 D 1 
HETATM 39 H H132 ULO . . . S 4 142.649 171.262 170.938 1 123.38 ? H132 ULO 1203 D 1 
HETATM 40 H H131 ULO . . . S 4 142.78 172.827 171.146 1 123.38 ? H131 ULO 1203 D 1 
HETATM 41 H H142 ULO . . . S 4 140.173 171.333 169.006 1 123.38 ? H142 ULO 1203 D 1 
HETATM 42 H H143 ULO . . . S 4 139.291 170.975 170.274 1 123.38 ? H143 ULO 1203 D 1 
HETATM 43 H H141 ULO . . . S 4 140.705 170.293 170.076 1 123.38 ? H141 ULO 1203 D 1 
HETATM 44 H H151 ULO . . . S 4 142.502 174.603 169.783 1 123.38 ? H151 ULO 1203 D 1 
HETATM 45 H H163 ULO . . . S 4 140.984 176.548 171.181 1 123.38 ? H163 ULO 1203 D 1 
HETATM 46 H H162 ULO . . . S 4 142.564 176.442 171.167 1 123.38 ? H162 ULO 1203 D 1 
HETATM 47 H H161 ULO . . . S 4 141.706 175.362 171.945 1 123.38 ? H161 ULO 1203 D 1 
HETATM 48 H H173 ULO . . . S 4 140.579 176.449 168.815 1 123.38 ? H173 ULO 1203 D 1 
HETATM 49 H H172 ULO . . . S 4 141.375 175.436 167.894 1 123.38 ? H172 ULO 1203 D 1 
HETATM 50 H H171 ULO . . . S 4 142.142 176.619 168.617 1 123.38 ? H171 ULO 1203 D 1 
#
_model_server_stats.io_time_ms              119 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    62 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           50 
#