data_8E4P
#
_model_server_result.job_id            m1I32Gc56JASDuGok6I29Q 
_model_server_result.datetime_utc      '2024-11-21 14:41:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8e4p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1202}' 
#
_entry.id    8E4P 
#
_exptl.entry_id    8E4P 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8E4P 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8E4P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 374 n n 
CBA CAB Y01 sing 375 n n 
CBA CAN Y01 sing 376 n n 
CAN CAJ Y01 sing 377 n n 
CAJ CAO Y01 sing 378 n n 
CAO CBB Y01 sing 379 n n 
CBB CAC Y01 sing 380 n n 
CBB CBE Y01 sing 381 n n 
CBE CAP Y01 sing 382 n n 
CBE CBI Y01 sing 383 n n 
CAP CAQ Y01 sing 384 n n 
CAQ CBG Y01 sing 385 n n 
CBG CBI Y01 sing 386 n n 
CBG CBD Y01 sing 387 n n 
CBI CAE Y01 sing 388 n n 
CBI CAU Y01 sing 389 n n 
CAU CAS Y01 sing 390 n n 
CAS CBF Y01 sing 391 n n 
CBF CBD Y01 sing 392 n n 
CBF CBH Y01 sing 393 n n 
CBD CAK Y01 sing 394 n n 
CAK CAI Y01 sing 395 n n 
CAI CAZ Y01 doub 396 n n 
CAZ CAV Y01 sing 397 n n 
CAZ CBH Y01 sing 398 n n 
CAV CBC Y01 sing 399 n n 
CBH CAD Y01 sing 400 n n 
CBH CAT Y01 sing 401 n n 
CAT CAR Y01 sing 402 n n 
CAR CBC Y01 sing 403 n n 
CBC OAW Y01 sing 404 n n 
OAW CAY Y01 sing 405 n n 
CAY OAG Y01 doub 406 n n 
CAY CAM Y01 sing 407 n n 
CAM CAL Y01 sing 408 n n 
CAL CAX Y01 sing 409 n n 
CAX OAH Y01 sing 410 n n 
CAX OAF Y01 doub 411 n n 
CAA HAA1 Y01 sing 412 n n 
CAA HAA2 Y01 sing 413 n n 
CAA HAA3 Y01 sing 414 n n 
CBA HBA Y01 sing 415 n n 
CAB HAB1 Y01 sing 416 n n 
CAB HAB2 Y01 sing 417 n n 
CAB HAB3 Y01 sing 418 n n 
CAN HAN1 Y01 sing 419 n n 
CAN HAN2 Y01 sing 420 n n 
CAJ HAJ1 Y01 sing 421 n n 
CAJ HAJ2 Y01 sing 422 n n 
CAO HAO1 Y01 sing 423 n n 
CAO HAO2 Y01 sing 424 n n 
CBB HBB Y01 sing 425 n n 
CAC HAC1 Y01 sing 426 n n 
CAC HAC2 Y01 sing 427 n n 
CAC HAC3 Y01 sing 428 n n 
CBE HBE Y01 sing 429 n n 
CAP HAP1 Y01 sing 430 n n 
CAP HAP2 Y01 sing 431 n n 
CAQ HAQ1 Y01 sing 432 n n 
CAQ HAQ2 Y01 sing 433 n n 
CBG HBG Y01 sing 434 n n 
CBD HBD Y01 sing 435 n n 
CAE HAE1 Y01 sing 436 n n 
CAE HAE2 Y01 sing 437 n n 
CAE HAE3 Y01 sing 438 n n 
CAU HAU1 Y01 sing 439 n n 
CAU HAU2 Y01 sing 440 n n 
CAS HAS1 Y01 sing 441 n n 
CAS HAS2 Y01 sing 442 n n 
CBF HBF Y01 sing 443 n n 
CAK HAK1 Y01 sing 444 n n 
CAK HAK2 Y01 sing 445 n n 
CAI HAI Y01 sing 446 n n 
CAV HAV1 Y01 sing 447 n n 
CAV HAV2 Y01 sing 448 n n 
CBC HBC Y01 sing 449 n n 
CAD HAD1 Y01 sing 450 n n 
CAD HAD2 Y01 sing 451 n n 
CAD HAD3 Y01 sing 452 n n 
CAT HAT1 Y01 sing 453 n n 
CAT HAT2 Y01 sing 454 n n 
CAR HAR1 Y01 sing 455 n n 
CAR HAR2 Y01 sing 456 n n 
CAM HAM1 Y01 sing 457 n n 
CAM HAM2 Y01 sing 458 n n 
CAL HAL1 Y01 sing 459 n n 
CAL HAL2 Y01 sing 460 n n 
OAH HAH Y01 sing 461 n n 
#
_atom_sites.entry_id                     8E4P 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 Y01 A 1 1201 1201 Y01 LIG . 
F 2 Y01 A 1 1202 1301 Y01 LIG . 
G 2 Y01 A 1 1203 1401 Y01 LIG . 
H 2 Y01 B 1 1201 1201 Y01 LIG . 
I 2 Y01 B 1 1202 1301 Y01 LIG . 
J 2 Y01 B 1 1203 1401 Y01 LIG . 
K 2 Y01 C 1 1201 1201 Y01 LIG . 
L 2 Y01 C 1 1202 1301 Y01 LIG . 
M 2 Y01 C 1 1203 1401 Y01 LIG . 
N 2 Y01 D 1 1201 1201 Y01 LIG . 
O 2 Y01 D 1 1202 1301 Y01 LIG . 
P 2 Y01 D 1 1203 1401 Y01 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAJ Y01 . . . L 2 141.011 196.113 213.142 1 20 ? CAJ Y01 1202 C 1 
HETATM 2 C CAO Y01 . . . L 2 142.053 195.011 213.402 1 20 ? CAO Y01 1202 C 1 
HETATM 3 C CBB Y01 . . . L 2 143.325 195.199 212.556 1 20 ? CBB Y01 1202 C 1 
HETATM 4 C CAC Y01 . . . L 2 144.398 194.195 213.015 1 20 ? CAC Y01 1202 C 1 
HETATM 5 C CBE Y01 . . . L 2 142.969 194.959 211.079 1 20 ? CBE Y01 1202 C 1 
HETATM 6 C CAP Y01 . . . L 2 142.173 196.178 210.535 1 20 ? CAP Y01 1202 C 1 
HETATM 7 C CAQ Y01 . . . L 2 142.76 196.493 209.13 1 20 ? CAQ Y01 1202 C 1 
HETATM 8 C CBG Y01 . . . L 2 143.622 195.251 208.809 1 20 ? CBG Y01 1202 C 1 
HETATM 9 C CBI Y01 . . . L 2 144.218 194.897 210.171 1 20 ? CBI Y01 1202 C 1 
HETATM 10 C CAE Y01 . . . L 2 145.307 195.894 210.599 1 20 ? CAE Y01 1202 C 1 
HETATM 11 C CAU Y01 . . . L 2 144.744 193.465 210.091 1 20 ? CAU Y01 1202 C 1 
HETATM 12 C CAS Y01 . . . L 2 145.619 193.181 208.849 1 20 ? CAS Y01 1202 C 1 
HETATM 13 C CBF Y01 . . . L 2 145.273 193.92 207.52 1 20 ? CBF Y01 1202 C 1 
HETATM 14 C CBD Y01 . . . L 2 144.699 195.333 207.723 1 20 ? CBD Y01 1202 C 1 
HETATM 15 C CAK Y01 . . . L 2 144.157 195.82 206.379 1 20 ? CAK Y01 1202 C 1 
HETATM 16 C CAI Y01 . . . L 2 145.14 195.493 205.244 1 20 ? CAI Y01 1202 C 1 
HETATM 17 C CAZ Y01 . . . L 2 146.245 194.735 205.333 1 20 ? CAZ Y01 1202 C 1 
HETATM 18 C CAV Y01 . . . L 2 147.284 194.35 204.272 1 20 ? CAV Y01 1202 C 1 
HETATM 19 C CBH Y01 . . . L 2 146.583 194.137 206.72 1 20 ? CBH Y01 1202 C 1 
HETATM 20 C CAD Y01 . . . L 2 147.648 194.921 207.504 1 20 ? CAD Y01 1202 C 1 
HETATM 21 C CAT Y01 . . . L 2 146.882 192.617 206.611 1 20 ? CAT Y01 1202 C 1 
HETATM 22 C CAR Y01 . . . L 2 147.73 192.165 205.404 1 20 ? CAR Y01 1202 C 1 
HETATM 23 C CBC Y01 . . . L 2 147.31 192.83 204.086 1 20 ? CBC Y01 1202 C 1 
HETATM 24 O OAW Y01 . . . L 2 148.246 192.507 203.054 1 20 ? OAW Y01 1202 C 1 
HETATM 25 C CAY Y01 . . . L 2 147.699 191.724 201.989 1 20 ? CAY Y01 1202 C 1 
HETATM 26 O OAG Y01 . . . L 2 146.712 192.107 201.404 1 20 ? OAG Y01 1202 C 1 
HETATM 27 C CAM Y01 . . . L 2 148.368 190.401 201.574 1 20 ? CAM Y01 1202 C 1 
HETATM 28 C CAL Y01 . . . L 2 149.428 190.608 200.476 1 20 ? CAL Y01 1202 C 1 
HETATM 29 C CAX Y01 . . . L 2 149.951 189.28 199.9 1 20 ? CAX Y01 1202 C 1 
HETATM 30 O OAH Y01 . . . L 2 150.203 188.358 200.641 1 20 ? OAH Y01 1202 C 1 
HETATM 31 O OAF Y01 . . . L 2 150.109 189.159 198.706 1 20 ? OAF Y01 1202 C 1 
HETATM 32 H HAJ1 Y01 . . . L 2 140.552 196.381 214.071 1 20 ? HAJ1 Y01 1202 C 1 
HETATM 33 H HAJ2 Y01 . . . L 2 141.502 196.974 212.738 1 20 ? HAJ2 Y01 1202 C 1 
HETATM 34 H HAO1 Y01 . . . L 2 141.622 194.06 213.168 1 20 ? HAO1 Y01 1202 C 1 
HETATM 35 H HAO2 Y01 . . . L 2 142.319 195.026 214.439 1 20 ? HAO2 Y01 1202 C 1 
HETATM 36 H HBB Y01 . . . L 2 143.69 196.198 212.676 1 20 ? HBB Y01 1202 C 1 
HETATM 37 H HAC1 Y01 . . . L 2 144.097 193.204 212.744 1 20 ? HAC1 Y01 1202 C 1 
HETATM 38 H HAC2 Y01 . . . L 2 144.513 194.257 214.077 1 20 ? HAC2 Y01 1202 C 1 
HETATM 39 H HAC3 Y01 . . . L 2 145.329 194.425 212.542 1 20 ? HAC3 Y01 1202 C 1 
HETATM 40 H HBE Y01 . . . L 2 142.394 194.063 210.972 1 20 ? HBE Y01 1202 C 1 
HETATM 41 H HAP1 Y01 . . . L 2 142.306 197.018 211.183 1 20 ? HAP1 Y01 1202 C 1 
HETATM 42 H HAP2 Y01 . . . L 2 141.135 195.933 210.451 1 20 ? HAP2 Y01 1202 C 1 
HETATM 43 H HAQ1 Y01 . . . L 2 141.975 196.604 208.412 1 20 ? HAQ1 Y01 1202 C 1 
HETATM 44 H HAQ2 Y01 . . . L 2 143.371 197.371 209.174 1 20 ? HAQ2 Y01 1202 C 1 
HETATM 45 H HBG Y01 . . . L 2 142.957 194.459 208.534 1 20 ? HBG Y01 1202 C 1 
HETATM 46 H HBD Y01 . . . L 2 145.478 195.99 208.048 1 20 ? HBD Y01 1202 C 1 
HETATM 47 H HAE1 Y01 . . . L 2 146.064 195.939 209.843 1 20 ? HAE1 Y01 1202 C 1 
HETATM 48 H HAE2 Y01 . . . L 2 144.874 196.863 210.734 1 20 ? HAE2 Y01 1202 C 1 
HETATM 49 H HAE3 Y01 . . . L 2 145.744 195.57 211.521 1 20 ? HAE3 Y01 1202 C 1 
HETATM 50 H HAU1 Y01 . . . L 2 145.328 193.268 210.965 1 20 ? HAU1 Y01 1202 C 1 
HETATM 51 H HAU2 Y01 . . . L 2 143.909 192.797 210.077 1 20 ? HAU2 Y01 1202 C 1 
HETATM 52 H HAS1 Y01 . . . L 2 146.628 193.411 209.116 1 20 ? HAS1 Y01 1202 C 1 
HETATM 53 H HAS2 Y01 . . . L 2 145.56 192.131 208.655 1 20 ? HAS2 Y01 1202 C 1 
HETATM 54 H HBF Y01 . . . L 2 144.594 193.325 206.947 1 20 ? HBF Y01 1202 C 1 
HETATM 55 H HAK1 Y01 . . . L 2 143.281 195.237 206.184 1 20 ? HAK1 Y01 1202 C 1 
HETATM 56 H HAK2 Y01 . . . L 2 144.132 196.887 206.446 1 20 ? HAK2 Y01 1202 C 1 
HETATM 57 H HAI Y01 . . . L 2 144.915 195.903 204.281 1 20 ? HAI Y01 1202 C 1 
HETATM 58 H HAV1 Y01 . . . L 2 148.237 194.61 204.685 1 20 ? HAV1 Y01 1202 C 1 
HETATM 59 H HAV2 Y01 . . . L 2 146.923 194.75 203.347 1 20 ? HAV2 Y01 1202 C 1 
HETATM 60 H HBC Y01 . . . L 2 146.335 192.489 203.809 1 20 ? HBC Y01 1202 C 1 
HETATM 61 H HAD1 Y01 . . . L 2 147.166 195.644 208.129 1 20 ? HAD1 Y01 1202 C 1 
HETATM 62 H HAD2 Y01 . . . L 2 148.3 195.423 206.819 1 20 ? HAD2 Y01 1202 C 1 
HETATM 63 H HAD3 Y01 . . . L 2 148.218 194.247 208.108 1 20 ? HAD3 Y01 1202 C 1 
HETATM 64 H HAT1 Y01 . . . L 2 147.429 192.315 207.48 1 20 ? HAT1 Y01 1202 C 1 
HETATM 65 H HAT2 Y01 . . . L 2 145.953 192.088 206.586 1 20 ? HAT2 Y01 1202 C 1 
HETATM 66 H HAR1 Y01 . . . L 2 148.755 192.405 205.595 1 20 ? HAR1 Y01 1202 C 1 
HETATM 67 H HAR2 Y01 . . . L 2 147.632 191.105 205.295 1 20 ? HAR2 Y01 1202 C 1 
HETATM 68 H HAM1 Y01 . . . L 2 148.838 189.968 202.432 1 20 ? HAM1 Y01 1202 C 1 
HETATM 69 H HAM2 Y01 . . . L 2 147.616 189.731 201.215 1 20 ? HAM2 Y01 1202 C 1 
HETATM 70 H HAL1 Y01 . . . L 2 150.25 191.154 200.891 1 20 ? HAL1 Y01 1202 C 1 
HETATM 71 H HAL2 Y01 . . . L 2 148.997 191.184 199.684 1 20 ? HAL2 Y01 1202 C 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           71 
#