data_8E4S
#
_model_server_result.job_id            KWJmGium3j9iI5l0v0tbXQ 
_model_server_result.datetime_utc      '2024-11-25 23:40:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8e4s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    8E4S 
#
_exptl.entry_id    8E4S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              418.369 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-hydroxy-6-oxo-N-[2-(pyridin-4-yl)ethyl]-2-{[2-(trifluoromethyl)phenyl]methyl}-3,6-dihydropyrimidine-4-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8E4S 
_cell.length_a            90.085 
_cell.length_b            90.085 
_cell.length_c            135.237 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8E4S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    'I 4 2' 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? 
metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc7 B MN MN . A MN 201 1_555 D O01 U9U . A U9U 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc8 B MN MN . A MN 201 1_555 D O30 U9U . A U9U 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc9 C MN MN . A MN 202 1_555 D O28 U9U . A U9U 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
metalc ? metalc10 C MN MN . A MN 202 1_555 D O30 U9U . A U9U 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc11 C MN MN . A MN 202 1_555 H O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc12 C MN MN . A MN 202 1_555 H O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
#
_chem_comp.formula           'C20 H17 F3 N4 O3' 
_chem_comp.formula_weight    418.369 
_chem_comp.id                U9U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-hydroxy-6-oxo-N-[2-(pyridin-4-yl)ethyl]-2-{[2-(trifluoromethyl)phenyl]methyl}-3,6-dihydropyrimidine-4-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N25 C26 U9U doub 471 n y 
N25 C24 U9U sing 472 n y 
C26 C27 U9U sing 473 n y 
C24 C23 U9U doub 474 n y 
C27 C22 U9U doub 475 n y 
C23 C22 U9U sing 476 n y 
F09 C08 U9U sing 477 n n 
C22 C21 U9U sing 478 n n 
F10 C08 U9U sing 479 n n 
C08 F11 U9U sing 480 n n 
C08 C07 U9U sing 481 n n 
C21 C20 U9U sing 482 n n 
C12 C07 U9U doub 483 n y 
C12 C13 U9U sing 484 n y 
C07 C06 U9U sing 485 n y 
C20 N19 U9U sing 486 n n 
N19 C18 U9U sing 487 n n 
C13 C14 U9U doub 488 n y 
C06 C05 U9U sing 489 n n 
C06 C15 U9U doub 490 n y 
C05 C04 U9U sing 491 n n 
N16 C04 U9U sing 492 n n 
N16 C17 U9U sing 493 n n 
C18 C17 U9U sing 494 n n 
C18 O28 U9U doub 495 n n 
C04 N03 U9U doub 496 n n 
C14 C15 U9U sing 497 n y 
C17 C29 U9U doub 498 n n 
N03 C02 U9U sing 499 n n 
C29 C02 U9U sing 500 n n 
C29 O30 U9U sing 501 n n 
C02 O01 U9U doub 502 n n 
C20 H1 U9U sing 503 n n 
C20 H2 U9U sing 504 n n 
C21 H3 U9U sing 505 n n 
C21 H4 U9U sing 506 n n 
C23 H5 U9U sing 507 n n 
C24 H6 U9U sing 508 n n 
C26 H7 U9U sing 509 n n 
C05 H8 U9U sing 510 n n 
C05 H9 U9U sing 511 n n 
C12 H10 U9U sing 512 n n 
C13 H11 U9U sing 513 n n 
C14 H12 U9U sing 514 n n 
C15 H13 U9U sing 515 n n 
C27 H14 U9U sing 516 n n 
N16 H15 U9U sing 517 n n 
N19 H16 U9U sing 518 n n 
O30 H17 U9U sing 519 n n 
#
_atom_sites.entry_id                     8E4S 
_atom_sites.fract_transf_matrix[1][1]    0.011101 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011101 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007394 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 201 201 MN MN . 
C 2 MN A 1 202 202 MN MN . 
D 3 U9U A 1 203 203 U9U 012 . 
E 4 QQ4 A 1 204 401 QQ4 PVP . 
F 5 SO4 A 1 205 1 SO4 SO4 . 
G 5 SO4 A 1 206 2 SO4 SO4 . 
H 6 HOH A 1 301 3 HOH HOH . 
H 6 HOH A 2 302 6 HOH HOH . 
H 6 HOH A 3 303 15 HOH HOH . 
H 6 HOH A 4 304 5 HOH HOH . 
H 6 HOH A 5 305 16 HOH HOH . 
H 6 HOH A 6 306 14 HOH HOH . 
H 6 HOH A 7 307 2 HOH HOH . 
H 6 HOH A 8 308 4 HOH HOH . 
H 6 HOH A 9 309 1 HOH HOH . 
H 6 HOH A 10 310 12 HOH HOH . 
H 6 HOH A 11 311 13 HOH HOH . 
H 6 HOH A 12 312 11 HOH HOH . 
H 6 HOH A 13 313 9 HOH HOH . 
H 6 HOH A 14 314 10 HOH HOH . 
H 6 HOH A 15 315 7 HOH HOH . 
H 6 HOH A 16 316 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C20 U9U . . . D 3 43.032 14.197 14.679 1 104.81 ? C20 U9U 203 A 1 
HETATM 2 C C21 U9U . . . D 3 43.182 13.335 13.431 1 110.29 ? C21 U9U 203 A 1 
HETATM 3 C C22 U9U . . . D 3 42.211 13.739 12.321 1 101.45 ? C22 U9U 203 A 1 
HETATM 4 C C23 U9U . . . D 3 41.882 15.07 12.101 1 91.55 ? C23 U9U 203 A 1 
HETATM 5 C C24 U9U . . . D 3 40.992 15.364 11.08 1 98.7 ? C24 U9U 203 A 1 
HETATM 6 C C26 U9U . . . D 3 40.757 13.14 10.513 1 85.62 ? C26 U9U 203 A 1 
HETATM 7 C C29 U9U . . . D 3 39.522 15.748 18.014 1 86.52 ? C29 U9U 203 A 1 
HETATM 8 C C02 U9U . . . D 3 38.122 15.761 18.531 1 83.24 ? C02 U9U 203 A 1 
HETATM 9 C C04 U9U . . . D 3 37.456 14.144 16.69 1 106.61 ? C04 U9U 203 A 1 
HETATM 10 C C05 U9U . . . D 3 36.415 13.285 15.983 1 114.65 ? C05 U9U 203 A 1 
HETATM 11 C C06 U9U . . . D 3 37.031 11.885 15.95 1 133.2 ? C06 U9U 203 A 1 
HETATM 12 C C07 U9U . . . D 3 37.575 11.342 14.789 1 138.35 ? C07 U9U 203 A 1 
HETATM 13 C C08 U9U . . . D 3 37.577 12.102 13.462 1 128.3 ? C08 U9U 203 A 1 
HETATM 14 C C12 U9U . . . D 3 38.129 10.073 14.814 1 143.27 ? C12 U9U 203 A 1 
HETATM 15 C C13 U9U . . . D 3 38.152 9.342 15.989 1 145.25 ? C13 U9U 203 A 1 
HETATM 16 C C14 U9U . . . D 3 37.617 9.883 17.146 1 143.64 ? C14 U9U 203 A 1 
HETATM 17 C C15 U9U . . . D 3 37.062 11.152 17.126 1 133.84 ? C15 U9U 203 A 1 
HETATM 18 C C17 U9U . . . D 3 39.868 14.918 16.83 1 93.71 ? C17 U9U 203 A 1 
HETATM 19 C C18 U9U . . . D 3 41.3 14.917 16.312 1 97.4 ? C18 U9U 203 A 1 
HETATM 20 C C27 U9U . . . D 3 41.636 12.766 11.516 1 96.94 ? C27 U9U 203 A 1 
HETATM 21 F F09 U9U . . . D 3 38.132 11.304 12.505 1 126.02 ? F09 U9U 203 A 1 
HETATM 22 F F10 U9U . . . D 3 36.298 12.404 13.096 1 126.81 ? F10 U9U 203 A 1 
HETATM 23 F F11 U9U . . . D 3 38.318 13.244 13.568 1 119.11 ? F11 U9U 203 A 1 
HETATM 24 N N03 U9U . . . D 3 37.099 14.965 17.876 1 102.43 ? N03 U9U 203 A 1 
HETATM 25 N N16 U9U . . . D 3 38.848 14.126 16.178 1 97.86 ? N16 U9U 203 A 1 
HETATM 26 N N19 U9U . . . D 3 41.659 14.15 15.139 1 89.79 ? N19 U9U 203 A 1 
HETATM 27 N N25 U9U . . . D 3 40.466 14.413 10.33 1 95.18 ? N25 U9U 203 A 1 
HETATM 28 O O01 U9U . . . D 3 37.845 16.419 19.474 1 87.66 ? O01 U9U 203 A 1 
HETATM 29 O O28 U9U . . . D 3 42.124 15.564 16.859 1 90.58 ? O28 U9U 203 A 1 
HETATM 30 O O30 U9U . . . D 3 40.524 16.508 18.631 1 92.27 ? O30 U9U 203 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           30 
#