data_8E4Y # _model_server_result.job_id ZsJOkZ5KU68tCHoO8OuYcw _model_server_result.datetime_utc '2024-10-19 15:35:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e4y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 8E4Y # _exptl.entry_id 8E4Y _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 410.483 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-hydroxy-3-(phosphonooxy)propyl hexadecanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8E4Y _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E4Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H39 O7 P' _chem_comp.formula_weight 410.483 _chem_comp.id NKO _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-hydroxy-3-(phosphonooxy)propyl hexadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '16:0 LPA;palmitoyl lysophosphatidic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA PAC NKO sing 235 n n OAB PAC NKO sing 236 n n PAC OAD NKO doub 237 n n PAC OAF NKO sing 238 n n OAE CAK NKO doub 239 n n OAF CAG NKO sing 240 n n CAG CAH NKO sing 241 n n CAH CAI NKO sing 242 n n CAH OBA NKO sing 243 n n CAI OAJ NKO sing 244 n n OAJ CAK NKO sing 245 n n CAK CAL NKO sing 246 n n CAL CAM NKO sing 247 n n CAM CAN NKO sing 248 n n CAN CAO NKO sing 249 n n CAO CAP NKO sing 250 n n CAP CAQ NKO sing 251 n n CAQ CAR NKO sing 252 n n CAR CAS NKO sing 253 n n CAS CAT NKO sing 254 n n CAT CAU NKO sing 255 n n CAU CAV NKO sing 256 n n CAV CAW NKO sing 257 n n CAW CAX NKO sing 258 n n CAX CAY NKO sing 259 n n CAY CAZ NKO sing 260 n n CAG HAG NKO sing 261 n n CAG HAGA NKO sing 262 n n CAH HAH NKO sing 263 n n CAI HAI NKO sing 264 n n CAI HAIA NKO sing 265 n n CAL HAL NKO sing 266 n n CAL HALA NKO sing 267 n n CAM HAM NKO sing 268 n n CAM HAMA NKO sing 269 n n CAN HAN NKO sing 270 n n CAN HANA NKO sing 271 n n CAO HAO NKO sing 272 n n CAO HAOA NKO sing 273 n n CAP HAP NKO sing 274 n n CAP HAPA NKO sing 275 n n CAQ HAQ NKO sing 276 n n CAQ HAQA NKO sing 277 n n CAR HAR NKO sing 278 n n CAR HARA NKO sing 279 n n CAS HAS NKO sing 280 n n CAS HASA NKO sing 281 n n CAT HAT NKO sing 282 n n CAT HATA NKO sing 283 n n CAU HAU NKO sing 284 n n CAU HAUA NKO sing 285 n n CAV HAV NKO sing 286 n n CAV HAVA NKO sing 287 n n CAW HAW NKO sing 288 n n CAW HAWA NKO sing 289 n n CAX HAX NKO sing 290 n n CAX HAXA NKO sing 291 n n CAY HAY NKO sing 292 n n CAY HAYA NKO sing 293 n n CAZ HAZ NKO sing 294 n n CAZ HAZA NKO sing 295 n n CAZ HAZB NKO sing 296 n n OBA HOBA NKO sing 297 n n OAA HOAA NKO sing 298 n n OAB HOAB NKO sing 299 n n # _atom_sites.entry_id 8E4Y _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UKL A 1 1001 1001 UKL PFE . C 3 NKO A 1 1002 1301 NKO NKO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA NKO . . . C 3 153.637 168.093 144.004 1 255.01 ? OAA NKO 1002 A 1 HETATM 2 O OAB NKO . . . C 3 152.481 165.851 143.836 1 258.89 -1 OAB NKO 1002 A 1 HETATM 3 P PAC NKO . . . C 3 152.421 167.265 144.381 1 254.68 ? PAC NKO 1002 A 1 HETATM 4 O OAD NKO . . . C 3 151.112 167.964 144.063 1 251.37 ? OAD NKO 1002 A 1 HETATM 5 O OAE NKO . . . C 3 155.865 167.242 150.577 1 212.99 ? OAE NKO 1002 A 1 HETATM 6 O OAF NKO . . . C 3 152.467 167.116 145.99 1 247.07 ? OAF NKO 1002 A 1 HETATM 7 C CAG NKO . . . C 3 153.514 166.302 146.59 1 234.71 ? CAG NKO 1002 A 1 HETATM 8 C CAH NKO . . . C 3 153.6 166.576 148.075 1 226.66 ? CAH NKO 1002 A 1 HETATM 9 C CAI NKO . . . C 3 154.284 165.469 148.845 1 220.85 ? CAI NKO 1002 A 1 HETATM 10 O OAJ NKO . . . C 3 154.227 165.76 150.26 1 218 ? OAJ NKO 1002 A 1 HETATM 11 C CAK NKO . . . C 3 155.35 166.184 150.837 1 208.97 ? CAK NKO 1002 A 1 HETATM 12 C CAL NKO . . . C 3 155.87 165.191 151.848 1 197.78 ? CAL NKO 1002 A 1 HETATM 13 C CAM NKO . . . C 3 157.351 165.285 152.08 1 189.94 ? CAM NKO 1002 A 1 HETATM 14 C CAN NKO . . . C 3 157.947 163.998 152.628 1 186.19 ? CAN NKO 1002 A 1 HETATM 15 C CAO NKO . . . C 3 159.393 164.121 153.063 1 183.74 ? CAO NKO 1002 A 1 HETATM 16 C CAP NKO . . . C 3 160.213 162.859 152.906 1 182.64 ? CAP NKO 1002 A 1 HETATM 17 C CAQ NKO . . . C 3 160.002 161.835 153.999 1 183.74 ? CAQ NKO 1002 A 1 HETATM 18 C CAR NKO . . . C 3 160.956 161.959 155.173 1 186.41 ? CAR NKO 1002 A 1 HETATM 19 C CAS NKO . . . C 3 162.206 161.099 155.085 1 188.98 ? CAS NKO 1002 A 1 HETATM 20 C CAT NKO . . . C 3 162.593 160.408 156.377 1 192.03 ? CAT NKO 1002 A 1 HETATM 21 C CAU NKO . . . C 3 163.212 161.317 157.419 1 195.32 ? CAU NKO 1002 A 1 HETATM 22 C CAV NKO . . . C 3 163.345 160.693 158.797 1 196.6 ? CAV NKO 1002 A 1 HETATM 23 C CAW NKO . . . C 3 164.682 160.916 159.483 1 196.17 ? CAW NKO 1002 A 1 HETATM 24 C CAX NKO . . . C 3 164.827 162.254 160.183 1 195.09 ? CAX NKO 1002 A 1 HETATM 25 C CAY NKO . . . C 3 165.442 163.359 159.353 1 191.54 ? CAY NKO 1002 A 1 HETATM 26 C CAZ NKO . . . C 3 164.822 164.72 159.573 1 187.12 ? CAZ NKO 1002 A 1 HETATM 27 O OBA NKO . . . C 3 154.309 167.797 148.282 1 226.45 ? OBA NKO 1002 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #