data_8E5S
#
_model_server_result.job_id            hGZHsXaHej1yv5-5y06MLQ 
_model_server_result.datetime_utc      '2024-11-21 12:46:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8e5s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":514}' 
#
_entry.id    8E5S 
#
_exptl.entry_id    8E5S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    24 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8E5S 
_cell.length_a            58.658 
_cell.length_b            70.85 
_cell.length_c            98.342 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8E5S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 274 A ASP 296 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? 
metalc ? metalc2 A OD2 ASP 274 A ASP 296 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc3 A OD1 ASP 347 A ASP 369 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.149 ? 
metalc ? metalc4 A OD2 ASP 347 A ASP 369 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? 
metalc ? metalc5 A OG SER 349 A SER 371 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.185 ? 
metalc ? metalc6 B NA NA . A NA 501 1_555 GA O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 250 n n 
C10 C9 OLC doub 251 n n 
C10 C11 OLC sing 252 n n 
C9 C8 OLC sing 253 n n 
C17 C16 OLC sing 254 z n 
C11 C12 OLC sing 255 n n 
C8 C7 OLC sing 256 n n 
C24 C22 OLC sing 257 n n 
C24 O25 OLC sing 258 n n 
C16 C15 OLC sing 259 n n 
C12 C13 OLC sing 260 n n 
C7 C6 OLC sing 261 n n 
C15 C14 OLC sing 262 n n 
C13 C14 OLC sing 263 n n 
C6 C5 OLC sing 264 n n 
C5 C4 OLC sing 265 n n 
C4 C3 OLC sing 266 n n 
C3 C2 OLC sing 267 n n 
C2 C1 OLC sing 268 n n 
C21 C22 OLC sing 269 n n 
C21 O20 OLC sing 270 n n 
C1 O19 OLC doub 271 n n 
C1 O20 OLC sing 272 n n 
C22 O23 OLC sing 273 n n 
C18 H18 OLC sing 274 n n 
C18 H18A OLC sing 275 n n 
C18 H18B OLC sing 276 n n 
C10 H10 OLC sing 277 n n 
C9 H9 OLC sing 278 n n 
C17 H17 OLC sing 279 n n 
C17 H17A OLC sing 280 n n 
C11 H11 OLC sing 281 n n 
C11 H11A OLC sing 282 n n 
C8 H8 OLC sing 283 n n 
C8 H8A OLC sing 284 n n 
C24 H24 OLC sing 285 n n 
C24 H24A OLC sing 286 n n 
C16 H16 OLC sing 287 n n 
C16 H16A OLC sing 288 n n 
C12 H12 OLC sing 289 n n 
C12 H12A OLC sing 290 n n 
C7 H7 OLC sing 291 n n 
C7 H7A OLC sing 292 n n 
C15 H15 OLC sing 293 n n 
C15 H15A OLC sing 294 n n 
C13 H13 OLC sing 295 n n 
C13 H13A OLC sing 296 n n 
C6 H6 OLC sing 297 n n 
C6 H6A OLC sing 298 n n 
C14 H14 OLC sing 299 n n 
C14 H14A OLC sing 300 n n 
C5 H5 OLC sing 301 n n 
C5 H5A OLC sing 302 n n 
C4 H4 OLC sing 303 n n 
C4 H4A OLC sing 304 n n 
C3 H3 OLC sing 305 n n 
C3 H3A OLC sing 306 n n 
C2 H2 OLC sing 307 n n 
C2 H2A OLC sing 308 n n 
C21 H21 OLC sing 309 n n 
C21 H21A OLC sing 310 n n 
C22 H22 OLC sing 311 n n 
O25 HO25 OLC sing 312 n n 
O23 HO23 OLC sing 313 n n 
#
_atom_sites.entry_id                     8E5S 
_atom_sites.fract_transf_matrix[1][1]    0.017048 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014114 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010169 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 501 501 NA NA . 
C 3 CL A 1 502 502 CL CL . 
D 4 OLC A 1 503 503 OLC OLC . 
E 4 OLC A 1 504 504 OLC OLC . 
F 4 OLC A 1 505 505 OLC OLC . 
G 4 OLC A 1 506 506 OLC OLC . 
H 4 OLC A 1 507 507 OLC OLC . 
I 4 OLC A 1 508 508 OLC OLC . 
J 4 OLC A 1 509 509 OLC OLC . 
K 4 OLC A 1 510 510 OLC OLC . 
L 4 OLC A 1 511 511 OLC OLC . 
M 4 OLC A 1 512 512 OLC OLC . 
N 4 OLC A 1 513 513 OLC OLC . 
O 4 OLC A 1 514 514 OLC OLC . 
P 4 OLC A 1 515 515 OLC OLC . 
Q 4 OLC A 1 516 516 OLC OLC . 
R 4 OLC A 1 517 517 OLC OLC . 
S 4 OLC A 1 518 518 OLC OLC . 
T 4 OLC A 1 519 519 OLC OLC . 
U 4 OLC A 1 520 520 OLC OLC . 
V 4 OLC A 1 521 521 OLC OLC . 
W 4 OLC A 1 522 522 OLC OLC . 
X 4 OLC A 1 523 523 OLC OLC . 
Y 4 OLC A 1 524 524 OLC OLC . 
Z 4 OLC A 1 525 525 OLC OLC . 
AA 4 OLC A 1 526 526 OLC OLC . 
BA 5 PEG A 1 527 527 PEG PEG . 
CA 5 PEG A 1 528 528 PEG PEG . 
DA 5 PEG A 1 529 529 PEG PEG . 
EA 6 GOL A 1 530 530 GOL GOL . 
FA 6 GOL A 1 531 531 GOL GOL . 
GA 7 HOH A 1 601 646 HOH HOH . 
GA 7 HOH A 2 602 603 HOH HOH . 
GA 7 HOH A 3 603 601 HOH HOH . 
GA 7 HOH A 4 604 602 HOH HOH . 
GA 7 HOH A 5 605 618 HOH HOH . 
GA 7 HOH A 6 606 604 HOH HOH . 
GA 7 HOH A 7 607 639 HOH HOH . 
GA 7 HOH A 8 608 626 HOH HOH . 
GA 7 HOH A 9 609 606 HOH HOH . 
GA 7 HOH A 10 610 607 HOH HOH . 
GA 7 HOH A 11 611 620 HOH HOH . 
GA 7 HOH A 12 612 612 HOH HOH . 
GA 7 HOH A 13 613 617 HOH HOH . 
GA 7 HOH A 14 614 621 HOH HOH . 
GA 7 HOH A 15 615 613 HOH HOH . 
GA 7 HOH A 16 616 622 HOH HOH . 
GA 7 HOH A 17 617 632 HOH HOH . 
GA 7 HOH A 18 618 619 HOH HOH . 
GA 7 HOH A 19 619 629 HOH HOH . 
GA 7 HOH A 20 620 628 HOH HOH . 
GA 7 HOH A 21 621 623 HOH HOH . 
GA 7 HOH A 22 622 640 HOH HOH . 
GA 7 HOH A 23 623 609 HOH HOH . 
GA 7 HOH A 24 624 625 HOH HOH . 
GA 7 HOH A 25 625 624 HOH HOH . 
GA 7 HOH A 26 626 616 HOH HOH . 
GA 7 HOH A 27 627 630 HOH HOH . 
GA 7 HOH A 28 628 608 HOH HOH . 
GA 7 HOH A 29 629 615 HOH HOH . 
GA 7 HOH A 30 630 614 HOH HOH . 
GA 7 HOH A 31 631 627 HOH HOH . 
GA 7 HOH A 32 632 645 HOH HOH . 
GA 7 HOH A 33 633 635 HOH HOH . 
GA 7 HOH A 34 634 631 HOH HOH . 
GA 7 HOH A 35 635 605 HOH HOH . 
GA 7 HOH A 36 636 633 HOH HOH . 
GA 7 HOH A 37 637 611 HOH HOH . 
GA 7 HOH A 38 638 638 HOH HOH . 
GA 7 HOH A 39 639 610 HOH HOH . 
GA 7 HOH A 40 640 634 HOH HOH . 
GA 7 HOH A 41 641 636 HOH HOH . 
GA 7 HOH A 42 642 641 HOH HOH . 
GA 7 HOH A 43 643 647 HOH HOH . 
GA 7 HOH A 44 644 644 HOH HOH . 
GA 7 HOH A 45 645 642 HOH HOH . 
GA 7 HOH A 46 646 643 HOH HOH . 
GA 7 HOH A 47 647 637 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . O 4 -33.932 -24.262 25.724 1 59.91 ? C18 OLC 514 A 1 
HETATM 2 C C17 OLC . . . O 4 -33.132 -23.566 26.823 1 62.32 ? C17 OLC 514 A 1 
HETATM 3 C C11 OLC . . . O 4 -31.843 -23.743 30.843 1 46.2 ? C11 OLC 514 A 1 
HETATM 4 C C16 OLC . . . O 4 -32.564 -22.25 26.293 1 50.19 ? C16 OLC 514 A 1 
HETATM 5 C C12 OLC . . . O 4 -32.155 -22.275 30.561 1 41.05 ? C12 OLC 514 A 1 
HETATM 6 C C15 OLC . . . O 4 -32.058 -21.414 27.467 1 54.64 ? C15 OLC 514 A 1 
HETATM 7 C C13 OLC . . . O 4 -31.03 -21.672 29.724 1 48.87 ? C13 OLC 514 A 1 
HETATM 8 C C14 OLC . . . O 4 -31.091 -22.243 28.309 1 57.04 ? C14 OLC 514 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           430 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#