data_8E5S # _model_server_result.job_id FdqgBEQ77EA1fM0YpQsc5A _model_server_result.datetime_utc '2024-11-23 08:22:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e5s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":528}' # _entry.id 8E5S # _exptl.entry_id 8E5S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8E5S _cell.length_a 58.658 _cell.length_b 70.85 _cell.length_c 98.342 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E5S _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 BA N N ? 5 CA N N ? 5 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 274 A ASP 296 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc2 A OD2 ASP 274 A ASP 296 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc3 A OD1 ASP 347 A ASP 369 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.149 ? metalc ? metalc4 A OD2 ASP 347 A ASP 369 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc5 A OG SER 349 A SER 371 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.185 ? metalc ? metalc6 B NA NA . A NA 501 1_555 GA O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 314 n n C1 C2 PEG sing 315 n n C1 H11 PEG sing 316 n n C1 H12 PEG sing 317 n n O1 HO1 PEG sing 318 n n C2 O2 PEG sing 319 n n C2 H21 PEG sing 320 n n C2 H22 PEG sing 321 n n O2 C3 PEG sing 322 n n C3 C4 PEG sing 323 n n C3 H31 PEG sing 324 n n C3 H32 PEG sing 325 n n C4 O4 PEG sing 326 n n C4 H41 PEG sing 327 n n C4 H42 PEG sing 328 n n O4 HO4 PEG sing 329 n n # _atom_sites.entry_id 8E5S _atom_sites.fract_transf_matrix[1][1] 0.017048 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010169 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 501 NA NA . C 3 CL A 1 502 502 CL CL . D 4 OLC A 1 503 503 OLC OLC . E 4 OLC A 1 504 504 OLC OLC . F 4 OLC A 1 505 505 OLC OLC . G 4 OLC A 1 506 506 OLC OLC . H 4 OLC A 1 507 507 OLC OLC . I 4 OLC A 1 508 508 OLC OLC . J 4 OLC A 1 509 509 OLC OLC . K 4 OLC A 1 510 510 OLC OLC . L 4 OLC A 1 511 511 OLC OLC . M 4 OLC A 1 512 512 OLC OLC . N 4 OLC A 1 513 513 OLC OLC . O 4 OLC A 1 514 514 OLC OLC . P 4 OLC A 1 515 515 OLC OLC . Q 4 OLC A 1 516 516 OLC OLC . R 4 OLC A 1 517 517 OLC OLC . S 4 OLC A 1 518 518 OLC OLC . T 4 OLC A 1 519 519 OLC OLC . U 4 OLC A 1 520 520 OLC OLC . V 4 OLC A 1 521 521 OLC OLC . W 4 OLC A 1 522 522 OLC OLC . X 4 OLC A 1 523 523 OLC OLC . Y 4 OLC A 1 524 524 OLC OLC . Z 4 OLC A 1 525 525 OLC OLC . AA 4 OLC A 1 526 526 OLC OLC . BA 5 PEG A 1 527 527 PEG PEG . CA 5 PEG A 1 528 528 PEG PEG . DA 5 PEG A 1 529 529 PEG PEG . EA 6 GOL A 1 530 530 GOL GOL . FA 6 GOL A 1 531 531 GOL GOL . GA 7 HOH A 1 601 646 HOH HOH . GA 7 HOH A 2 602 603 HOH HOH . GA 7 HOH A 3 603 601 HOH HOH . GA 7 HOH A 4 604 602 HOH HOH . GA 7 HOH A 5 605 618 HOH HOH . GA 7 HOH A 6 606 604 HOH HOH . GA 7 HOH A 7 607 639 HOH HOH . GA 7 HOH A 8 608 626 HOH HOH . GA 7 HOH A 9 609 606 HOH HOH . GA 7 HOH A 10 610 607 HOH HOH . GA 7 HOH A 11 611 620 HOH HOH . GA 7 HOH A 12 612 612 HOH HOH . GA 7 HOH A 13 613 617 HOH HOH . GA 7 HOH A 14 614 621 HOH HOH . GA 7 HOH A 15 615 613 HOH HOH . GA 7 HOH A 16 616 622 HOH HOH . GA 7 HOH A 17 617 632 HOH HOH . GA 7 HOH A 18 618 619 HOH HOH . GA 7 HOH A 19 619 629 HOH HOH . GA 7 HOH A 20 620 628 HOH HOH . GA 7 HOH A 21 621 623 HOH HOH . GA 7 HOH A 22 622 640 HOH HOH . GA 7 HOH A 23 623 609 HOH HOH . GA 7 HOH A 24 624 625 HOH HOH . GA 7 HOH A 25 625 624 HOH HOH . GA 7 HOH A 26 626 616 HOH HOH . GA 7 HOH A 27 627 630 HOH HOH . GA 7 HOH A 28 628 608 HOH HOH . GA 7 HOH A 29 629 615 HOH HOH . GA 7 HOH A 30 630 614 HOH HOH . GA 7 HOH A 31 631 627 HOH HOH . GA 7 HOH A 32 632 645 HOH HOH . GA 7 HOH A 33 633 635 HOH HOH . GA 7 HOH A 34 634 631 HOH HOH . GA 7 HOH A 35 635 605 HOH HOH . GA 7 HOH A 36 636 633 HOH HOH . GA 7 HOH A 37 637 611 HOH HOH . GA 7 HOH A 38 638 638 HOH HOH . GA 7 HOH A 39 639 610 HOH HOH . GA 7 HOH A 40 640 634 HOH HOH . GA 7 HOH A 41 641 636 HOH HOH . GA 7 HOH A 42 642 641 HOH HOH . GA 7 HOH A 43 643 647 HOH HOH . GA 7 HOH A 44 644 644 HOH HOH . GA 7 HOH A 45 645 642 HOH HOH . GA 7 HOH A 46 646 643 HOH HOH . GA 7 HOH A 47 647 637 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . CA 5 -12.802 -0.661 2.841 1 46.39 ? C1 PEG 528 A 1 HETATM 2 C C2 PEG . . . CA 5 -13.454 -1.681 1.909 1 43.64 ? C2 PEG 528 A 1 HETATM 3 O O2 PEG . . . CA 5 -14.77 -1.288 1.631 1 47 ? O2 PEG 528 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 3 #