data_8E60 # _model_server_result.job_id '_csfMVx2-bso9YxR1rDzQQ' _model_server_result.datetime_utc '2025-03-06 07:27:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e60 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BA","auth_seq_id":527}' # _entry.id 8E60 # _exptl.entry_id 8E60 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8E60 _cell.length_a 59.076 _cell.length_b 71.101 _cell.length_c 98.747 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E60 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 BA N N ? 5 CA N N ? 5 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 31 A ALA 53 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc2 A OD1 ASP 34 A ASP 56 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc3 A OD1 ASN 37 A ASN 59 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc4 A O ALA 205 A ALA 227 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc5 A SD MET 208 A MET 230 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc6 A OD2 ASP 274 A ASP 296 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc7 A OD2 ASP 347 A ASP 369 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc8 B MN MN . A MN 501 1_555 FA O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc9 C MN MN . A MN 502 1_555 FA O HOH . A HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc10 C MN MN . A MN 502 1_555 FA O HOH . A HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 314 n n C1 C2 PEG sing 315 n n C1 H11 PEG sing 316 n n C1 H12 PEG sing 317 n n O1 HO1 PEG sing 318 n n C2 O2 PEG sing 319 n n C2 H21 PEG sing 320 n n C2 H22 PEG sing 321 n n O2 C3 PEG sing 322 n n C3 C4 PEG sing 323 n n C3 H31 PEG sing 324 n n C3 H32 PEG sing 325 n n C4 O4 PEG sing 326 n n C4 H41 PEG sing 327 n n C4 H42 PEG sing 328 n n O4 HO4 PEG sing 329 n n # _atom_sites.entry_id 8E60 _atom_sites.fract_transf_matrix[1][1] 0.016927 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 501 501 MN MN . C 2 MN A 1 502 502 MN MN . D 3 CL A 1 503 503 CL CL . E 4 OLC A 1 504 504 OLC OLC . F 4 OLC A 1 505 505 OLC OLC . G 4 OLC A 1 506 506 OLC OLC . H 4 OLC A 1 507 507 OLC OLC . I 4 OLC A 1 508 508 OLC OLC . J 4 OLC A 1 509 509 OLC OLC . K 4 OLC A 1 510 510 OLC OLC . L 4 OLC A 1 511 511 OLC OLC . M 4 OLC A 1 512 512 OLC OLC . N 4 OLC A 1 513 513 OLC OLC . O 4 OLC A 1 514 514 OLC OLC . P 4 OLC A 1 515 515 OLC OLC . Q 4 OLC A 1 516 516 OLC OLC . R 4 OLC A 1 517 517 OLC OLC . S 4 OLC A 1 518 518 OLC OLC . T 4 OLC A 1 519 519 OLC OLC . U 4 OLC A 1 520 520 OLC OLC . V 4 OLC A 1 521 521 OLC OLC . W 4 OLC A 1 522 522 OLC OLC . X 4 OLC A 1 523 523 OLC OLC . Y 4 OLC A 1 524 524 OLC OLC . Z 4 OLC A 1 525 525 OLC OLC . AA 4 OLC A 1 526 526 OLC OLC . BA 5 PEG A 1 527 527 PEG PEG . CA 5 PEG A 1 528 528 PEG PEG . DA 5 PEG A 1 529 529 PEG PEG . EA 6 GOL A 1 530 530 GOL GOL . FA 7 HOH A 1 601 606 HOH HOH . FA 7 HOH A 2 602 617 HOH HOH . FA 7 HOH A 3 603 632 HOH HOH . FA 7 HOH A 4 604 628 HOH HOH . FA 7 HOH A 5 605 604 HOH HOH . FA 7 HOH A 6 606 644 HOH HOH . FA 7 HOH A 7 607 610 HOH HOH . FA 7 HOH A 8 608 614 HOH HOH . FA 7 HOH A 9 609 635 HOH HOH . FA 7 HOH A 10 610 619 HOH HOH . FA 7 HOH A 11 611 631 HOH HOH . FA 7 HOH A 12 612 620 HOH HOH . FA 7 HOH A 13 613 607 HOH HOH . FA 7 HOH A 14 614 618 HOH HOH . FA 7 HOH A 15 615 603 HOH HOH . FA 7 HOH A 16 616 642 HOH HOH . FA 7 HOH A 17 617 611 HOH HOH . FA 7 HOH A 18 618 621 HOH HOH . FA 7 HOH A 19 619 605 HOH HOH . FA 7 HOH A 20 620 626 HOH HOH . FA 7 HOH A 21 621 602 HOH HOH . FA 7 HOH A 22 622 612 HOH HOH . FA 7 HOH A 23 623 615 HOH HOH . FA 7 HOH A 24 624 629 HOH HOH . FA 7 HOH A 25 625 613 HOH HOH . FA 7 HOH A 26 626 627 HOH HOH . FA 7 HOH A 27 627 637 HOH HOH . FA 7 HOH A 28 628 601 HOH HOH . FA 7 HOH A 29 629 608 HOH HOH . FA 7 HOH A 30 630 643 HOH HOH . FA 7 HOH A 31 631 622 HOH HOH . FA 7 HOH A 32 632 639 HOH HOH . FA 7 HOH A 33 633 616 HOH HOH . FA 7 HOH A 34 634 634 HOH HOH . FA 7 HOH A 35 635 609 HOH HOH . FA 7 HOH A 36 636 636 HOH HOH . FA 7 HOH A 37 637 638 HOH HOH . FA 7 HOH A 38 638 625 HOH HOH . FA 7 HOH A 39 639 641 HOH HOH . FA 7 HOH A 40 640 646 HOH HOH . FA 7 HOH A 41 641 630 HOH HOH . FA 7 HOH A 42 642 623 HOH HOH . FA 7 HOH A 43 643 647 HOH HOH . FA 7 HOH A 44 644 633 HOH HOH . FA 7 HOH A 45 645 624 HOH HOH . FA 7 HOH A 46 646 640 HOH HOH . FA 7 HOH A 47 647 645 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . BA 5 -25.46 -5.256 -0.204 1 57.55 ? C1 PEG 527 A 1 HETATM 2 O O1 PEG . . . BA 5 -25.068 -3.979 -0.629 1 67.13 ? O1 PEG 527 A 1 HETATM 3 C C2 PEG . . . BA 5 -26.057 -5.187 1.2 1 57.11 ? C2 PEG 527 A 1 HETATM 4 O O2 PEG . . . BA 5 -26.074 -6.472 1.756 1 47.94 ? O2 PEG 527 A 1 HETATM 5 C C3 PEG . . . BA 5 -27.159 -6.712 2.606 1 63.01 ? C3 PEG 527 A 1 HETATM 6 C C4 PEG . . . BA 5 -26.996 -5.919 3.901 1 59.47 ? C4 PEG 527 A 1 HETATM 7 O O4 PEG . . . BA 5 -28.173 -6.01 4.657 1 64.83 ? O4 PEG 527 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #