data_8E6D # _model_server_result.job_id TnVD26mJXpZwVhDGjqGmtg _model_server_result.datetime_utc '2024-11-04 22:50:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8E6D # _exptl.entry_id 8E6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 577.686 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,2S)-2-{[N-({2-[(4-fluorophenyl)sulfanyl]-2-methylpropoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.6 _cell.angle_gamma 90 _cell.entry_id 8E6D _cell.length_a 101.41 _cell.length_b 57.238 _cell.length_c 49.835 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -19.151357 0 46.008181 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 155 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 148 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C14 _struct_conn.ptnr2_label_comp_id UTL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id UTL _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.812 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H36 F N3 O8 S2' _chem_comp.formula_weight 577.686 _chem_comp.id UTL _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,2S)-2-{[N-({2-[(4-fluorophenyl)sulfanyl]-2-methylpropoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C4 UTL sing 358 n n F1 C22 UTL sing 359 n n C23 C22 UTL doub 360 n y C23 C24 UTL sing 361 n y C22 C21 UTL sing 362 n y C24 C19 UTL doub 363 n y C4 C5 UTL sing 364 n n C4 C3 UTL sing 365 n n C21 C20 UTL doub 366 n y C19 C20 UTL sing 367 n y C19 S1 UTL sing 368 n n C3 C2 UTL sing 369 n n S1 C16 UTL sing 370 n n N1 C2 UTL sing 371 n n N1 C1 UTL sing 372 n n O1 C1 UTL doub 373 n n C2 C7 UTL sing 374 n n C1 O5 UTL sing 375 n n C18 C16 UTL sing 376 n n C16 C15 UTL sing 377 n n C16 C17 UTL sing 378 n n O5 C15 UTL sing 379 n n C7 O4 UTL doub 380 n n C7 N2 UTL sing 381 n n N2 C8 UTL sing 382 n n O3 C14 UTL sing 383 n n C8 C14 UTL sing 384 n n C8 C9 UTL sing 385 n n C9 C10 UTL sing 386 n n C10 C13 UTL sing 387 n n C10 C11 UTL sing 388 n n C13 C12 UTL sing 389 n n C12 N3 UTL sing 390 n n C11 O2 UTL doub 391 n n C11 N3 UTL sing 392 n n C13 H1 UTL sing 393 n n C13 H2 UTL sing 394 n n C18 H3 UTL sing 395 n n C18 H4 UTL sing 396 n n C18 H5 UTL sing 397 n n C17 H6 UTL sing 398 n n C17 H7 UTL sing 399 n n C17 H8 UTL sing 400 n n C15 H9 UTL sing 401 n n C15 H10 UTL sing 402 n n C21 H11 UTL sing 403 n n C24 H12 UTL sing 404 n n C2 H13 UTL sing 405 n n C3 H14 UTL sing 406 n n C3 H15 UTL sing 407 n n C4 H16 UTL sing 408 n n C5 H17 UTL sing 409 n n C5 H18 UTL sing 410 n n C5 H19 UTL sing 411 n n C6 H20 UTL sing 412 n n C6 H21 UTL sing 413 n n C6 H22 UTL sing 414 n n C8 H23 UTL sing 415 n n C9 H24 UTL sing 416 n n C9 H25 UTL sing 417 n n C10 H26 UTL sing 418 n n C14 H27 UTL sing 419 n n C12 H29 UTL sing 420 n n C12 H30 UTL sing 421 n n C20 H31 UTL sing 422 n n C23 H32 UTL sing 423 n n N1 H33 UTL sing 424 n n N2 H34 UTL sing 425 n n N3 H35 UTL sing 426 n n O3 H36 UTL sing 427 n n C14 S2 UTL sing 428 n n S2 O6 UTL doub 429 n n S2 O7 UTL doub 430 n n S2 O8 UTL sing 431 n n O8 H28 UTL sing 432 n n # _atom_sites.entry_id 8E6D _atom_sites.fract_transf_matrix[1][1] 0.009861 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004105 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017471 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021735 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UTL A 1 401 401 UTL C51 . C 3 HOH A 1 501 10 HOH HOH . C 3 HOH A 2 502 11 HOH HOH . C 3 HOH A 3 503 6 HOH HOH . C 3 HOH A 4 504 2 HOH HOH . C 3 HOH A 5 505 13 HOH HOH . C 3 HOH A 6 506 1 HOH HOH . C 3 HOH A 7 507 12 HOH HOH . C 3 HOH A 8 508 9 HOH HOH . C 3 HOH A 9 509 8 HOH HOH . C 3 HOH A 10 510 16 HOH HOH . C 3 HOH A 11 511 4 HOH HOH . C 3 HOH A 12 512 15 HOH HOH . C 3 HOH A 13 513 5 HOH HOH . C 3 HOH A 14 514 3 HOH HOH . C 3 HOH A 15 515 7 HOH HOH . C 3 HOH A 16 516 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 UTL . . . B 2 -22.503 24.826 6.901 1 41.86 ? C13 UTL 401 A 1 HETATM 2 C C18 UTL . . . B 2 -23.871 20.351 2.08 1 72.78 ? C18 UTL 401 A 1 HETATM 3 C C17 UTL . . . B 2 -22.333 18.878 3.385 1 63.92 ? C17 UTL 401 A 1 HETATM 4 C C16 UTL . . . B 2 -22.434 20.125 2.52 1 66.75 ? C16 UTL 401 A 1 HETATM 5 C C15 UTL . . . B 2 -21.977 21.323 3.305 1 62.65 ? C15 UTL 401 A 1 HETATM 6 C C19 UTL . . . B 2 -22.125 18.414 0.216 1 77.17 ? C19 UTL 401 A 1 HETATM 7 C C21 UTL . . . B 2 -22.235 16.025 -0.082 1 82.84 ? C21 UTL 401 A 1 HETATM 8 C C22 UTL . . . B 2 -23.229 16.22 -0.999 1 82.3 ? C22 UTL 401 A 1 HETATM 9 C C24 UTL . . . B 2 -23.135 18.569 -0.726 1 76.71 ? C24 UTL 401 A 1 HETATM 10 C C1 UTL . . . B 2 -21.466 23.173 1.914 1 59.35 ? C1 UTL 401 A 1 HETATM 11 C C2 UTL . . . B 2 -21.128 25.571 1.832 1 53.05 ? C2 UTL 401 A 1 HETATM 12 C C3 UTL . . . B 2 -21.198 26.551 0.662 1 55.57 ? C3 UTL 401 A 1 HETATM 13 C C4 UTL . . . B 2 -20.74 25.999 -0.687 1 63.17 ? C4 UTL 401 A 1 HETATM 14 C C5 UTL . . . B 2 -19.286 25.559 -0.63 1 60.88 ? C5 UTL 401 A 1 HETATM 15 C C6 UTL . . . B 2 -20.942 27.029 -1.789 1 65.52 ? C6 UTL 401 A 1 HETATM 16 C C7 UTL . . . B 2 -21.563 26.249 3.133 1 55.27 ? C7 UTL 401 A 1 HETATM 17 C C8 UTL . . . B 2 -20.897 26.98 5.393 1 46.34 ? C8 UTL 401 A 1 HETATM 18 C C9 UTL . . . B 2 -20.276 26.087 6.467 1 39.04 ? C9 UTL 401 A 1 HETATM 19 C C10 UTL . . . B 2 -21.014 24.757 6.601 1 42.99 ? C10 UTL 401 A 1 HETATM 20 C C14 UTL . . . B 2 -20.507 28.437 5.57 1 46.29 ? C14 UTL 401 A 1 HETATM 21 C C11 UTL . . . B 2 -20.512 23.851 7.71 1 48.21 ? C11 UTL 401 A 1 HETATM 22 C C12 UTL . . . B 2 -22.799 23.457 7.49 1 39.62 ? C12 UTL 401 A 1 HETATM 23 C C20 UTL . . . B 2 -21.673 17.137 0.532 1 81.57 ? C20 UTL 401 A 1 HETATM 24 C C23 UTL . . . B 2 -23.696 17.457 -1.34 1 79.83 ? C23 UTL 401 A 1 HETATM 25 F F1 UTL . . . B 2 -23.778 15.13 -1.602 1 87.38 ? F1 UTL 401 A 1 HETATM 26 N N1 UTL . . . B 2 -21.923 24.386 1.564 1 61.23 ? N1 UTL 401 A 1 HETATM 27 N N2 UTL . . . B 2 -20.616 26.463 4.052 1 57.44 ? N2 UTL 401 A 1 HETATM 28 N N3 UTL . . . B 2 -21.539 23.127 8.149 1 46.96 ? N3 UTL 401 A 1 HETATM 29 O O1 UTL . . . B 2 -20.338 22.778 1.73 1 63.78 ? O1 UTL 401 A 1 HETATM 30 O O2 UTL . . . B 2 -19.344 23.787 8.129 1 45.82 ? O2 UTL 401 A 1 HETATM 31 O O3 UTL . . . B 2 -21.428 29.253 4.871 1 46.09 ? O3 UTL 401 A 1 HETATM 32 O O4 UTL . . . B 2 -22.74 26.559 3.304 1 58.38 ? O4 UTL 401 A 1 HETATM 33 O O5 UTL . . . B 2 -22.41 22.514 2.6 1 66.09 ? O5 UTL 401 A 1 HETATM 34 S S1 UTL . . . B 2 -21.413 19.828 0.996 1 81.92 ? S1 UTL 401 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #