data_8E6I
#
_model_server_result.job_id            2P7WVJiysS-jXVAYY38iPQ 
_model_server_result.datetime_utc      '2025-03-06 07:12:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8e6i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":520}' 
#
_entry.id    8E6I 
#
_exptl.entry_id    8E6I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    23 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8E6I 
_cell.length_a            58.673 
_cell.length_b            71.35 
_cell.length_c            98.593 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8E6I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
? 4 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 34 A ASP 56 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? 
metalc ? metalc2 A OD1 ASN 37 A ASN 59 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? 
metalc ? metalc3 A O ALA 205 A ALA 227 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc4 A OD1 ASP 274 A ASP 296 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc5 B MN MN . A MN 501 1_555 DA O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc6 B MN MN . A MN 501 1_555 DA O HOH . A HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc7 B MN MN . A MN 501 1_555 DA O HOH . A HOH 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc8 C MN MN . A MN 502 1_555 DA O HOH . A HOH 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 237 n n 
C10 C9 OLC doub 238 n n 
C10 C11 OLC sing 239 n n 
C9 C8 OLC sing 240 n n 
C17 C16 OLC sing 241 z n 
C11 C12 OLC sing 242 n n 
C8 C7 OLC sing 243 n n 
C24 C22 OLC sing 244 n n 
C24 O25 OLC sing 245 n n 
C16 C15 OLC sing 246 n n 
C12 C13 OLC sing 247 n n 
C7 C6 OLC sing 248 n n 
C15 C14 OLC sing 249 n n 
C13 C14 OLC sing 250 n n 
C6 C5 OLC sing 251 n n 
C5 C4 OLC sing 252 n n 
C4 C3 OLC sing 253 n n 
C3 C2 OLC sing 254 n n 
C2 C1 OLC sing 255 n n 
C21 C22 OLC sing 256 n n 
C21 O20 OLC sing 257 n n 
C1 O19 OLC doub 258 n n 
C1 O20 OLC sing 259 n n 
C22 O23 OLC sing 260 n n 
C18 H18 OLC sing 261 n n 
C18 H18A OLC sing 262 n n 
C18 H18B OLC sing 263 n n 
C10 H10 OLC sing 264 n n 
C9 H9 OLC sing 265 n n 
C17 H17 OLC sing 266 n n 
C17 H17A OLC sing 267 n n 
C11 H11 OLC sing 268 n n 
C11 H11A OLC sing 269 n n 
C8 H8 OLC sing 270 n n 
C8 H8A OLC sing 271 n n 
C24 H24 OLC sing 272 n n 
C24 H24A OLC sing 273 n n 
C16 H16 OLC sing 274 n n 
C16 H16A OLC sing 275 n n 
C12 H12 OLC sing 276 n n 
C12 H12A OLC sing 277 n n 
C7 H7 OLC sing 278 n n 
C7 H7A OLC sing 279 n n 
C15 H15 OLC sing 280 n n 
C15 H15A OLC sing 281 n n 
C13 H13 OLC sing 282 n n 
C13 H13A OLC sing 283 n n 
C6 H6 OLC sing 284 n n 
C6 H6A OLC sing 285 n n 
C14 H14 OLC sing 286 n n 
C14 H14A OLC sing 287 n n 
C5 H5 OLC sing 288 n n 
C5 H5A OLC sing 289 n n 
C4 H4 OLC sing 290 n n 
C4 H4A OLC sing 291 n n 
C3 H3 OLC sing 292 n n 
C3 H3A OLC sing 293 n n 
C2 H2 OLC sing 294 n n 
C2 H2A OLC sing 295 n n 
C21 H21 OLC sing 296 n n 
C21 H21A OLC sing 297 n n 
C22 H22 OLC sing 298 n n 
O25 HO25 OLC sing 299 n n 
O23 HO23 OLC sing 300 n n 
#
_atom_sites.entry_id                     8E6I 
_atom_sites.fract_transf_matrix[1][1]    0.017044 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014015 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010143 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 501 501 MN MN . 
C 2 MN A 1 502 502 MN MN . 
D 3 CL A 1 503 503 CL CL . 
E 3 CL A 1 504 504 CL CL . 
F 4 OLC A 1 505 505 OLC OLC . 
G 4 OLC A 1 506 506 OLC OLC . 
H 4 OLC A 1 507 507 OLC OLC . 
I 4 OLC A 1 508 508 OLC OLC . 
J 4 OLC A 1 509 509 OLC OLC . 
K 4 OLC A 1 510 510 OLC OLC . 
L 4 OLC A 1 511 511 OLC OLC . 
M 4 OLC A 1 512 512 OLC OLC . 
N 4 OLC A 1 513 513 OLC OLC . 
O 4 OLC A 1 514 514 OLC OLC . 
P 4 OLC A 1 515 515 OLC OLC . 
Q 4 OLC A 1 516 516 OLC OLC . 
R 4 OLC A 1 517 517 OLC OLC . 
S 4 OLC A 1 518 518 OLC OLC . 
T 4 OLC A 1 519 519 OLC OLC . 
U 4 OLC A 1 520 520 OLC OLC . 
V 4 OLC A 1 521 521 OLC OLC . 
W 4 OLC A 1 522 522 OLC OLC . 
X 4 OLC A 1 523 523 OLC OLC . 
Y 4 OLC A 1 524 524 OLC OLC . 
Z 4 OLC A 1 525 525 OLC OLC . 
AA 4 OLC A 1 526 526 OLC OLC . 
BA 4 OLC A 1 527 527 OLC OLC . 
CA 5 PEG A 1 528 528 PEG PEG . 
DA 6 HOH A 1 601 641 HOH HOH . 
DA 6 HOH A 2 602 613 HOH HOH . 
DA 6 HOH A 3 603 623 HOH HOH . 
DA 6 HOH A 4 604 640 HOH HOH . 
DA 6 HOH A 5 605 609 HOH HOH . 
DA 6 HOH A 6 606 614 HOH HOH . 
DA 6 HOH A 7 607 616 HOH HOH . 
DA 6 HOH A 8 608 648 HOH HOH . 
DA 6 HOH A 9 609 657 HOH HOH . 
DA 6 HOH A 10 610 656 HOH HOH . 
DA 6 HOH A 11 611 651 HOH HOH . 
DA 6 HOH A 12 612 644 HOH HOH . 
DA 6 HOH A 13 613 628 HOH HOH . 
DA 6 HOH A 14 614 659 HOH HOH . 
DA 6 HOH A 15 615 624 HOH HOH . 
DA 6 HOH A 16 616 601 HOH HOH . 
DA 6 HOH A 17 617 603 HOH HOH . 
DA 6 HOH A 18 618 617 HOH HOH . 
DA 6 HOH A 19 619 606 HOH HOH . 
DA 6 HOH A 20 620 635 HOH HOH . 
DA 6 HOH A 21 621 643 HOH HOH . 
DA 6 HOH A 22 622 611 HOH HOH . 
DA 6 HOH A 23 623 608 HOH HOH . 
DA 6 HOH A 24 624 660 HOH HOH . 
DA 6 HOH A 25 625 645 HOH HOH . 
DA 6 HOH A 26 626 647 HOH HOH . 
DA 6 HOH A 27 627 631 HOH HOH . 
DA 6 HOH A 28 628 629 HOH HOH . 
DA 6 HOH A 29 629 610 HOH HOH . 
DA 6 HOH A 30 630 634 HOH HOH . 
DA 6 HOH A 31 631 604 HOH HOH . 
DA 6 HOH A 32 632 669 HOH HOH . 
DA 6 HOH A 33 633 620 HOH HOH . 
DA 6 HOH A 34 634 639 HOH HOH . 
DA 6 HOH A 35 635 602 HOH HOH . 
DA 6 HOH A 36 636 652 HOH HOH . 
DA 6 HOH A 37 637 618 HOH HOH . 
DA 6 HOH A 38 638 625 HOH HOH . 
DA 6 HOH A 39 639 632 HOH HOH . 
DA 6 HOH A 40 640 666 HOH HOH . 
DA 6 HOH A 41 641 664 HOH HOH . 
DA 6 HOH A 42 642 626 HOH HOH . 
DA 6 HOH A 43 643 649 HOH HOH . 
DA 6 HOH A 44 644 630 HOH HOH . 
DA 6 HOH A 45 645 615 HOH HOH . 
DA 6 HOH A 46 646 605 HOH HOH . 
DA 6 HOH A 47 647 661 HOH HOH . 
DA 6 HOH A 48 648 627 HOH HOH . 
DA 6 HOH A 49 649 653 HOH HOH . 
DA 6 HOH A 50 650 646 HOH HOH . 
DA 6 HOH A 51 651 665 HOH HOH . 
DA 6 HOH A 52 652 650 HOH HOH . 
DA 6 HOH A 53 653 633 HOH HOH . 
DA 6 HOH A 54 654 621 HOH HOH . 
DA 6 HOH A 55 655 607 HOH HOH . 
DA 6 HOH A 56 656 663 HOH HOH . 
DA 6 HOH A 57 657 662 HOH HOH . 
DA 6 HOH A 58 658 619 HOH HOH . 
DA 6 HOH A 59 659 612 HOH HOH . 
DA 6 HOH A 60 660 622 HOH HOH . 
DA 6 HOH A 61 661 655 HOH HOH . 
DA 6 HOH A 62 662 667 HOH HOH . 
DA 6 HOH A 63 663 654 HOH HOH . 
DA 6 HOH A 64 664 642 HOH HOH . 
DA 6 HOH A 65 665 636 HOH HOH . 
DA 6 HOH A 66 666 638 HOH HOH . 
DA 6 HOH A 67 667 658 HOH HOH . 
DA 6 HOH A 68 668 668 HOH HOH . 
DA 6 HOH A 69 669 637 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . U 4 -31.674 -19.821 24.256 1 57.13 ? C18 OLC 520 A 1 
HETATM 2 C C10 OLC . . . U 4 -30.472 -25.542 17.074 1 68.96 ? C10 OLC 520 A 1 
HETATM 3 C C9 OLC . . . U 4 -29.402 -26.228 16.727 1 66.24 ? C9 OLC 520 A 1 
HETATM 4 C C17 OLC . . . U 4 -32.018 -19.894 22.77 1 62.79 ? C17 OLC 520 A 1 
HETATM 5 C C11 OLC . . . U 4 -31.143 -25.807 18.42 1 69.03 ? C11 OLC 520 A 1 
HETATM 6 C C8 OLC . . . U 4 -28.718 -25.978 15.383 1 65.89 ? C8 OLC 520 A 1 
HETATM 7 C C24 OLC . . . U 4 -28.225 -23.93 4.677 1 73.47 ? C24 OLC 520 A 1 
HETATM 8 C C16 OLC . . . U 4 -32.482 -21.305 22.416 1 67.23 ? C16 OLC 520 A 1 
HETATM 9 C C12 OLC . . . U 4 -32.068 -24.644 18.771 1 69.75 ? C12 OLC 520 A 1 
HETATM 10 C C7 OLC . . . U 4 -29.604 -25.098 14.504 1 66.95 ? C7 OLC 520 A 1 
HETATM 11 C C15 OLC . . . U 4 -31.718 -21.793 21.187 1 67.05 ? C15 OLC 520 A 1 
HETATM 12 C C13 OLC . . . U 4 -31.616 -24.026 20.092 1 66.31 ? C13 OLC 520 A 1 
HETATM 13 C C6 OLC . . . U 4 -29.141 -25.196 13.052 1 69.5 ? C6 OLC 520 A 1 
HETATM 14 C C14 OLC . . . U 4 -32.532 -22.86 20.457 1 66.03 ? C14 OLC 520 A 1 
HETATM 15 C C5 OLC . . . U 4 -29.945 -24.221 12.195 1 73.87 ? C5 OLC 520 A 1 
HETATM 16 C C4 OLC . . . U 4 -29.574 -24.424 10.729 1 76.98 ? C4 OLC 520 A 1 
HETATM 17 C C3 OLC . . . U 4 -30.4 -23.486 9.851 1 81.23 ? C3 OLC 520 A 1 
HETATM 18 C C2 OLC . . . U 4 -30.158 -23.847 8.388 1 79.02 ? C2 OLC 520 A 1 
HETATM 19 C C21 OLC . . . U 4 -30.482 -23.151 5.392 1 83.11 ? C21 OLC 520 A 1 
HETATM 20 C C1 OLC . . . U 4 -31.357 -23.419 7.546 1 79.31 ? C1 OLC 520 A 1 
HETATM 21 C C22 OLC . . . U 4 -29.726 -24.183 4.559 1 77.02 ? C22 OLC 520 A 1 
HETATM 22 O O19 OLC . . . U 4 -32.227 -22.777 8.032 1 77.1 ? O19 OLC 520 A 1 
HETATM 23 O O25 OLC . . . U 4 -27.989 -22.57 4.917 1 69.86 ? O25 OLC 520 A 1 
HETATM 24 O O23 OLC . . . U 4 -30.018 -25.467 5.034 1 83.79 ? O23 OLC 520 A 1 
HETATM 25 O O20 OLC . . . U 4 -31.423 -23.798 6.201 1 86.73 ? O20 OLC 520 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           25 
#