data_8E6L # _model_server_result.job_id GIZAZhmZhGPrqXzK-qFkpg _model_server_result.datetime_utc '2024-11-23 08:07:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":521}' # _entry.id 8E6L # _exptl.entry_id 8E6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 21 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8E6L _cell.length_a 58.514 _cell.length_b 71.64 _cell.length_c 98.895 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N ? 4 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 34 A ASP 56 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc2 A OD1 ASN 37 A ASN 59 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc3 A O ALA 205 A ALA 227 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc4 A SD MET 208 A MET 230 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc5 B MN MN . A MN 501 1_555 AA O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 250 n n C10 C9 OLC doub 251 n n C10 C11 OLC sing 252 n n C9 C8 OLC sing 253 n n C17 C16 OLC sing 254 z n C11 C12 OLC sing 255 n n C8 C7 OLC sing 256 n n C24 C22 OLC sing 257 n n C24 O25 OLC sing 258 n n C16 C15 OLC sing 259 n n C12 C13 OLC sing 260 n n C7 C6 OLC sing 261 n n C15 C14 OLC sing 262 n n C13 C14 OLC sing 263 n n C6 C5 OLC sing 264 n n C5 C4 OLC sing 265 n n C4 C3 OLC sing 266 n n C3 C2 OLC sing 267 n n C2 C1 OLC sing 268 n n C21 C22 OLC sing 269 n n C21 O20 OLC sing 270 n n C1 O19 OLC doub 271 n n C1 O20 OLC sing 272 n n C22 O23 OLC sing 273 n n C18 H18 OLC sing 274 n n C18 H18A OLC sing 275 n n C18 H18B OLC sing 276 n n C10 H10 OLC sing 277 n n C9 H9 OLC sing 278 n n C17 H17 OLC sing 279 n n C17 H17A OLC sing 280 n n C11 H11 OLC sing 281 n n C11 H11A OLC sing 282 n n C8 H8 OLC sing 283 n n C8 H8A OLC sing 284 n n C24 H24 OLC sing 285 n n C24 H24A OLC sing 286 n n C16 H16 OLC sing 287 n n C16 H16A OLC sing 288 n n C12 H12 OLC sing 289 n n C12 H12A OLC sing 290 n n C7 H7 OLC sing 291 n n C7 H7A OLC sing 292 n n C15 H15 OLC sing 293 n n C15 H15A OLC sing 294 n n C13 H13 OLC sing 295 n n C13 H13A OLC sing 296 n n C6 H6 OLC sing 297 n n C6 H6A OLC sing 298 n n C14 H14 OLC sing 299 n n C14 H14A OLC sing 300 n n C5 H5 OLC sing 301 n n C5 H5A OLC sing 302 n n C4 H4 OLC sing 303 n n C4 H4A OLC sing 304 n n C3 H3 OLC sing 305 n n C3 H3A OLC sing 306 n n C2 H2 OLC sing 307 n n C2 H2A OLC sing 308 n n C21 H21 OLC sing 309 n n C21 H21A OLC sing 310 n n C22 H22 OLC sing 311 n n O25 HO25 OLC sing 312 n n O23 HO23 OLC sing 313 n n # _atom_sites.entry_id 8E6L _atom_sites.fract_transf_matrix[1][1] 0.01709 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 501 501 MN MN . C 3 CL A 1 502 502 CL CL . D 3 CL A 1 503 503 CL CL . E 4 OLC A 1 504 504 OLC OLC . F 4 OLC A 1 505 505 OLC OLC . G 4 OLC A 1 506 506 OLC OLC . H 4 OLC A 1 507 507 OLC OLC . I 4 OLC A 1 508 508 OLC OLC . J 4 OLC A 1 509 509 OLC OLC . K 4 OLC A 1 510 510 OLC OLC . L 4 OLC A 1 511 511 OLC OLC . M 4 OLC A 1 512 512 OLC OLC . N 4 OLC A 1 513 513 OLC OLC . O 4 OLC A 1 514 514 OLC OLC . P 4 OLC A 1 515 515 OLC OLC . Q 4 OLC A 1 516 516 OLC OLC . R 4 OLC A 1 517 517 OLC OLC . S 4 OLC A 1 518 518 OLC OLC . T 4 OLC A 1 519 519 OLC OLC . U 4 OLC A 1 520 520 OLC OLC . V 4 OLC A 1 521 521 OLC OLC . W 4 OLC A 1 522 522 OLC OLC . X 4 OLC A 1 523 523 OLC OLC . Y 4 OLC A 1 524 524 OLC OLC . Z 5 GOL A 1 525 525 GOL GOL . AA 6 HOH A 1 601 605 HOH HOH . AA 6 HOH A 2 602 621 HOH HOH . AA 6 HOH A 3 603 615 HOH HOH . AA 6 HOH A 4 604 614 HOH HOH . AA 6 HOH A 5 605 602 HOH HOH . AA 6 HOH A 6 606 609 HOH HOH . AA 6 HOH A 7 607 603 HOH HOH . AA 6 HOH A 8 608 601 HOH HOH . AA 6 HOH A 9 609 611 HOH HOH . AA 6 HOH A 10 610 620 HOH HOH . AA 6 HOH A 11 611 608 HOH HOH . AA 6 HOH A 12 612 612 HOH HOH . AA 6 HOH A 13 613 619 HOH HOH . AA 6 HOH A 14 614 604 HOH HOH . AA 6 HOH A 15 615 607 HOH HOH . AA 6 HOH A 16 616 618 HOH HOH . AA 6 HOH A 17 617 616 HOH HOH . AA 6 HOH A 18 618 617 HOH HOH . AA 6 HOH A 19 619 606 HOH HOH . AA 6 HOH A 20 620 610 HOH HOH . AA 6 HOH A 21 621 613 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . V 4 -12.301 -8.262 41.245 1 83.34 ? C24 OLC 521 A 1 HETATM 2 C C5 OLC . . . V 4 -19.4 -5.877 38.734 1 89.93 ? C5 OLC 521 A 1 HETATM 3 C C4 OLC . . . V 4 -18.925 -7.267 39.156 1 80.52 ? C4 OLC 521 A 1 HETATM 4 C C3 OLC . . . V 4 -17.399 -7.324 39.113 1 74.91 ? C3 OLC 521 A 1 HETATM 5 C C2 OLC . . . V 4 -16.93 -8.775 39.207 1 75.51 ? C2 OLC 521 A 1 HETATM 6 C C21 OLC . . . V 4 -14.416 -9.153 40.28 1 89.81 ? C21 OLC 521 A 1 HETATM 7 C C1 OLC . . . V 4 -16.746 -9.198 40.664 1 92.52 ? C1 OLC 521 A 1 HETATM 8 C C22 OLC . . . V 4 -13.083 -9.531 40.919 1 91.57 ? C22 OLC 521 A 1 HETATM 9 O O19 OLC . . . V 4 -17.687 -9.439 41.346 1 94.82 ? O19 OLC 521 A 1 HETATM 10 O O25 OLC . . . V 4 -11.177 -8.6 42.008 1 84.12 ? O25 OLC 521 A 1 HETATM 11 O O23 OLC . . . V 4 -13.332 -10.245 42.096 1 102.03 ? O23 OLC 521 A 1 HETATM 12 O O20 OLC . . . V 4 -15.458 -9.311 41.204 1 97.78 ? O20 OLC 521 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 12 #