data_8E70 # _model_server_result.job_id ov2PBgdwW7r-E7tlqEmJRA _model_server_result.datetime_utc '2024-12-25 01:19:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e70 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":1002}' # _entry.id 8E70 # _exptl.entry_id 8E70 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 66.007 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BERYLLIUM TRIFLUORIDE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 M N N ? 5 P N N ? 5 S N N ? 5 V N N ? 5 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NZ LYS 184 e LYS 184 1_555 J BE BEF . e BEF 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc2 H O2B ADP . e ADP 1000 1_555 I MG MG . e MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc3 H O1B ADP . e ADP 1000 1_555 J BE BEF . e BEF 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.751 ? metalc ? metalc4 C NZ LYS 184 f LYS 184 1_555 M BE BEF . f BEF 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc5 K O2B ADP . f ADP 1000 1_555 L MG MG . f MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc6 K O1B ADP . f ADP 1000 1_555 M BE BEF . f BEF 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.753 ? metalc ? metalc7 D NZ LYS 184 c LYS 184 1_555 P BE BEF . c BEF 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc8 N O3B ADP . c ADP 1000 1_555 O MG MG . c MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc9 N O2B ADP . c ADP 1000 1_555 P BE BEF . c BEF 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? metalc ? metalc10 E NZ LYS 184 b LYS 184 1_555 S BE BEF . b BEF 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc11 Q O1B ADP . b ADP 1000 1_555 R MG MG . b MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc12 Q O2B ADP . b ADP 1000 1_555 S BE BEF . b BEF 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.753 ? metalc ? metalc13 F NZ LYS 184 a LYS 184 1_555 V BE BEF . a BEF 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc14 T O1B ADP . a ADP 1000 1_555 U MG MG . a MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc15 T O2B ADP . a ADP 1000 1_555 V BE BEF . a BEF 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? metalc ? metalc16 G NZ LYS 184 d LYS 184 1_555 Y BE BEF . d BEF 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc17 W O3B ADP . d ADP 1000 1_555 X MG MG . d MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc18 W O2B ADP . d ADP 1000 1_555 Y BE BEF . d BEF 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.754 ? # _chem_comp.formula 'Be F3 -1' _chem_comp.formula_weight 66.007 _chem_comp.id BEF _chem_comp.mon_nstd_flag . _chem_comp.name 'BERYLLIUM TRIFLUORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BE F1 BEF sing 114 n n BE F2 BEF sing 115 n n BE F3 BEF sing 116 n n # _atom_sites.entry_id 8E70 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ADP e 1 1000 1000 ADP ADP . I 4 MG e 1 1001 1001 MG MG . J 5 BEF e 1 1002 1002 BEF BEF . K 3 ADP f 1 1000 1000 ADP ADP . L 4 MG f 1 1001 1001 MG MG . M 5 BEF f 1 1002 1002 BEF BEF . N 3 ADP c 1 1000 1000 ADP ADP . O 4 MG c 1 1001 1001 MG MG . P 5 BEF c 1 1002 1002 BEF BEF . Q 3 ADP b 1 1000 1000 ADP ADP . R 4 MG b 1 1001 1001 MG MG . S 5 BEF b 1 1002 1002 BEF BEF . T 3 ADP a 1 1000 1000 ADP ADP . U 4 MG a 1 1001 1001 MG MG . V 5 BEF a 1 1002 1002 BEF BEF . W 3 ADP d 1 1000 1000 ADP ADP . X 4 MG d 1 1001 1001 MG MG . Y 5 BEF d 1 1002 1002 BEF BEF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BE BE BEF . . . V 5 243.203 185.908 178.087 1 164.8 0 BE BEF 1002 a 1 HETATM 2 F F1 BEF . . . V 5 242.878 184.526 178.661 1 172.69 0 F1 BEF 1002 a 1 HETATM 3 F F2 BEF . . . V 5 244.008 186.8 179.089 1 177.21 0 F2 BEF 1002 a 1 HETATM 4 F F3 BEF . . . V 5 244.109 185.756 176.846 1 157.02 0 F3 BEF 1002 a 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #