data_8E7C # _model_server_result.job_id G0pTFsh4VVxc7BI_CIGZYg _model_server_result.datetime_utc '2024-11-09 01:29:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e7c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 8E7C # _exptl.entry_id 8E7C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8E7C _cell.length_a 64.144 _cell.length_b 64.144 _cell.length_c 261.807 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E7C _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,N,O,P,Q,R,S,T,U,V,W,X,Z 1 1 A,C,D,E,F,G,H,I,J,K,L,M,Y 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 y,-x+y,z-1/6 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 -43.6345 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 144 A CYS 144 1_555 C C34 V2M . A V2M 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale2 B SG CYS 144 B CYS 144 1_555 N C34 V2M . B V2M 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 8E7C _atom_sites.fract_transf_matrix[1][1] 0.01559 _atom_sites.fract_transf_matrix[1][2] 0.009001 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018002 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 V2M A 1 401 401 V2M LIG . D 3 GOL A 1 402 501 GOL GOL . E 3 GOL A 1 403 601 GOL GOL . F 3 GOL A 1 404 3 GOL GOL . G 3 GOL A 1 405 5 GOL GOL . H 4 DMS A 1 406 1 DMS DMS . I 4 DMS A 1 407 2 DMS DMS . J 4 DMS A 1 408 3 DMS DMS . K 4 DMS A 1 409 4 DMS DMS . L 4 DMS A 1 410 5 DMS DMS . M 4 DMS A 1 411 6 DMS DMS . N 2 V2M B 1 401 401 V2M LIG . O 3 GOL B 1 402 501 GOL GOL . P 3 GOL B 1 403 601 GOL GOL . Q 3 GOL B 1 404 701 GOL GOL . R 3 GOL B 1 405 801 GOL GOL . S 4 DMS B 1 406 901 DMS DMS . T 3 GOL B 1 407 1 GOL GOL . U 3 GOL B 1 408 2 GOL GOL . V 3 GOL B 1 409 4 GOL GOL . W 3 GOL B 1 410 6 GOL GOL . X 3 GOL B 1 411 7 GOL GOL . Y 5 HOH A 1 501 9 HOH HOH . Y 5 HOH A 2 502 103 HOH HOH . Y 5 HOH A 3 503 232 HOH HOH . Y 5 HOH A 4 504 36 HOH HOH . Y 5 HOH A 5 505 65 HOH HOH . Y 5 HOH A 6 506 1 HOH HOH . Y 5 HOH A 7 507 3 HOH HOH . Y 5 HOH A 8 508 16 HOH HOH . Y 5 HOH A 9 509 58 HOH HOH . Y 5 HOH A 10 510 42 HOH HOH . Y 5 HOH A 11 511 115 HOH HOH . Y 5 HOH A 12 512 254 HOH HOH . Y 5 HOH A 13 513 88 HOH HOH . Y 5 HOH A 14 514 11 HOH HOH . Y 5 HOH A 15 515 40 HOH HOH . Y 5 HOH A 16 516 23 HOH HOH . Y 5 HOH A 17 517 262 HOH HOH . Y 5 HOH A 18 518 50 HOH HOH . Y 5 HOH A 19 519 105 HOH HOH . Y 5 HOH A 20 520 46 HOH HOH . Y 5 HOH A 21 521 25 HOH HOH . Y 5 HOH A 22 522 77 HOH HOH . Y 5 HOH A 23 523 149 HOH HOH . Y 5 HOH A 24 524 79 HOH HOH . Y 5 HOH A 25 525 41 HOH HOH . Y 5 HOH A 26 526 18 HOH HOH . Y 5 HOH A 27 527 76 HOH HOH . Y 5 HOH A 28 528 148 HOH HOH . Y 5 HOH A 29 529 38 HOH HOH . Y 5 HOH A 30 530 24 HOH HOH . Y 5 HOH A 31 531 12 HOH HOH . Y 5 HOH A 32 532 51 HOH HOH . Y 5 HOH A 33 533 60 HOH HOH . Y 5 HOH A 34 534 66 HOH HOH . Y 5 HOH A 35 535 67 HOH HOH . Y 5 HOH A 36 536 59 HOH HOH . Y 5 HOH A 37 537 198 HOH HOH . Y 5 HOH A 38 538 87 HOH HOH . Y 5 HOH A 39 539 113 HOH HOH . Y 5 HOH A 40 540 221 HOH HOH . Y 5 HOH A 41 541 121 HOH HOH . Y 5 HOH A 42 542 44 HOH HOH . Y 5 HOH A 43 543 99 HOH HOH . Y 5 HOH A 44 544 197 HOH HOH . Y 5 HOH A 45 545 35 HOH HOH . Y 5 HOH A 46 546 104 HOH HOH . Y 5 HOH A 47 547 224 HOH HOH . Y 5 HOH A 48 548 122 HOH HOH . Y 5 HOH A 49 549 116 HOH HOH . Y 5 HOH A 50 550 49 HOH HOH . Y 5 HOH A 51 551 10 HOH HOH . Y 5 HOH A 52 552 90 HOH HOH . Y 5 HOH A 53 553 138 HOH HOH . Y 5 HOH A 54 554 100 HOH HOH . Y 5 HOH A 55 555 29 HOH HOH . Y 5 HOH A 56 556 117 HOH HOH . Y 5 HOH A 57 557 165 HOH HOH . Y 5 HOH A 58 558 27 HOH HOH . Y 5 HOH A 59 559 85 HOH HOH . Y 5 HOH A 60 560 92 HOH HOH . Y 5 HOH A 61 561 124 HOH HOH . Y 5 HOH A 62 562 238 HOH HOH . Y 5 HOH A 63 563 178 HOH HOH . Y 5 HOH A 64 564 246 HOH HOH . Y 5 HOH A 65 565 244 HOH HOH . Y 5 HOH A 66 566 264 HOH HOH . Y 5 HOH A 67 567 190 HOH HOH . Y 5 HOH A 68 568 240 HOH HOH . Y 5 HOH A 69 569 188 HOH HOH . Y 5 HOH A 70 570 45 HOH HOH . Y 5 HOH A 71 571 259 HOH HOH . Y 5 HOH A 72 572 120 HOH HOH . Y 5 HOH A 73 573 70 HOH HOH . Y 5 HOH A 74 574 179 HOH HOH . Y 5 HOH A 75 575 202 HOH HOH . Y 5 HOH A 76 576 260 HOH HOH . Y 5 HOH A 77 577 98 HOH HOH . Y 5 HOH A 78 578 257 HOH HOH . Y 5 HOH A 79 579 160 HOH HOH . Y 5 HOH A 80 580 248 HOH HOH . Y 5 HOH A 81 581 48 HOH HOH . Y 5 HOH A 82 582 110 HOH HOH . Y 5 HOH A 83 583 218 HOH HOH . Y 5 HOH A 84 584 196 HOH HOH . Y 5 HOH A 85 585 163 HOH HOH . Y 5 HOH A 86 586 175 HOH HOH . Y 5 HOH A 87 587 201 HOH HOH . Y 5 HOH A 88 588 220 HOH HOH . Y 5 HOH A 89 589 144 HOH HOH . Y 5 HOH A 90 590 173 HOH HOH . Y 5 HOH A 91 591 263 HOH HOH . Y 5 HOH A 92 592 112 HOH HOH . Y 5 HOH A 93 593 189 HOH HOH . Y 5 HOH A 94 594 159 HOH HOH . Y 5 HOH A 95 595 227 HOH HOH . Y 5 HOH A 96 596 89 HOH HOH . Y 5 HOH A 97 597 94 HOH HOH . Y 5 HOH A 98 598 177 HOH HOH . Y 5 HOH A 99 599 123 HOH HOH . Y 5 HOH A 100 600 93 HOH HOH . Y 5 HOH A 101 601 255 HOH HOH . Y 5 HOH A 102 602 106 HOH HOH . Y 5 HOH A 103 603 109 HOH HOH . Y 5 HOH A 104 604 119 HOH HOH . Y 5 HOH A 105 605 84 HOH HOH . Y 5 HOH A 106 606 231 HOH HOH . Y 5 HOH A 107 607 102 HOH HOH . Y 5 HOH A 108 608 91 HOH HOH . Y 5 HOH A 109 609 217 HOH HOH . Y 5 HOH A 110 610 261 HOH HOH . Y 5 HOH A 111 611 256 HOH HOH . Y 5 HOH A 112 612 265 HOH HOH . Y 5 HOH A 113 613 111 HOH HOH . Y 5 HOH A 114 614 228 HOH HOH . Y 5 HOH A 115 615 97 HOH HOH . Y 5 HOH A 116 616 241 HOH HOH . Y 5 HOH A 117 617 158 HOH HOH . Y 5 HOH A 118 618 229 HOH HOH . Y 5 HOH A 119 619 186 HOH HOH . Y 5 HOH A 120 620 219 HOH HOH . Y 5 HOH A 121 621 226 HOH HOH . Y 5 HOH A 122 622 161 HOH HOH . Y 5 HOH A 123 623 180 HOH HOH . Y 5 HOH A 124 624 191 HOH HOH . Y 5 HOH A 125 625 61 HOH HOH . Y 5 HOH A 126 626 203 HOH HOH . Y 5 HOH A 127 627 200 HOH HOH . Y 5 HOH A 128 628 230 HOH HOH . Y 5 HOH A 129 629 96 HOH HOH . Y 5 HOH A 130 630 239 HOH HOH . Y 5 HOH A 131 631 157 HOH HOH . Y 5 HOH A 132 632 95 HOH HOH . Z 5 HOH B 1 501 80 HOH HOH . Z 5 HOH B 2 502 14 HOH HOH . Z 5 HOH B 3 503 139 HOH HOH . Z 5 HOH B 4 504 62 HOH HOH . Z 5 HOH B 5 505 141 HOH HOH . Z 5 HOH B 6 506 74 HOH HOH . Z 5 HOH B 7 507 33 HOH HOH . Z 5 HOH B 8 508 19 HOH HOH . Z 5 HOH B 9 509 140 HOH HOH . Z 5 HOH B 10 510 147 HOH HOH . Z 5 HOH B 11 511 20 HOH HOH . Z 5 HOH B 12 512 184 HOH HOH . Z 5 HOH B 13 513 71 HOH HOH . Z 5 HOH B 14 514 81 HOH HOH . Z 5 HOH B 15 515 171 HOH HOH . Z 5 HOH B 16 516 57 HOH HOH . Z 5 HOH B 17 517 136 HOH HOH . Z 5 HOH B 18 518 28 HOH HOH . Z 5 HOH B 19 519 131 HOH HOH . Z 5 HOH B 20 520 143 HOH HOH . Z 5 HOH B 21 521 135 HOH HOH . Z 5 HOH B 22 522 75 HOH HOH . Z 5 HOH B 23 523 82 HOH HOH . Z 5 HOH B 24 524 6 HOH HOH . Z 5 HOH B 25 525 187 HOH HOH . Z 5 HOH B 26 526 176 HOH HOH . Z 5 HOH B 27 527 22 HOH HOH . Z 5 HOH B 28 528 192 HOH HOH . Z 5 HOH B 29 529 127 HOH HOH . Z 5 HOH B 30 530 21 HOH HOH . Z 5 HOH B 31 531 73 HOH HOH . Z 5 HOH B 32 532 34 HOH HOH . Z 5 HOH B 33 533 146 HOH HOH . Z 5 HOH B 34 534 39 HOH HOH . Z 5 HOH B 35 535 206 HOH HOH . Z 5 HOH B 36 536 215 HOH HOH . Z 5 HOH B 37 537 194 HOH HOH . Z 5 HOH B 38 538 13 HOH HOH . Z 5 HOH B 39 539 152 HOH HOH . Z 5 HOH B 40 540 4 HOH HOH . Z 5 HOH B 41 541 43 HOH HOH . Z 5 HOH B 42 542 185 HOH HOH . Z 5 HOH B 43 543 52 HOH HOH . Z 5 HOH B 44 544 133 HOH HOH . Z 5 HOH B 45 545 214 HOH HOH . Z 5 HOH B 46 546 207 HOH HOH . Z 5 HOH B 47 547 118 HOH HOH . Z 5 HOH B 48 548 55 HOH HOH . Z 5 HOH B 49 549 26 HOH HOH . Z 5 HOH B 50 550 195 HOH HOH . Z 5 HOH B 51 551 142 HOH HOH . Z 5 HOH B 52 552 172 HOH HOH . Z 5 HOH B 53 553 126 HOH HOH . Z 5 HOH B 54 554 125 HOH HOH . Z 5 HOH B 55 555 208 HOH HOH . Z 5 HOH B 56 556 252 HOH HOH . Z 5 HOH B 57 557 193 HOH HOH . Z 5 HOH B 58 558 235 HOH HOH . Z 5 HOH B 59 559 213 HOH HOH . Z 5 HOH B 60 560 242 HOH HOH . Z 5 HOH B 61 561 56 HOH HOH . Z 5 HOH B 62 562 128 HOH HOH . Z 5 HOH B 63 563 225 HOH HOH . Z 5 HOH B 64 564 8 HOH HOH . Z 5 HOH B 65 565 132 HOH HOH . Z 5 HOH B 66 566 253 HOH HOH . Z 5 HOH B 67 567 150 HOH HOH . Z 5 HOH B 68 568 174 HOH HOH . Z 5 HOH B 69 569 245 HOH HOH . Z 5 HOH B 70 570 130 HOH HOH . Z 5 HOH B 71 571 243 HOH HOH . Z 5 HOH B 72 572 151 HOH HOH . Z 5 HOH B 73 573 249 HOH HOH . Z 5 HOH B 74 574 237 HOH HOH . Z 5 HOH B 75 575 86 HOH HOH . Z 5 HOH B 76 576 134 HOH HOH . Z 5 HOH B 77 577 236 HOH HOH . Z 5 HOH B 78 578 137 HOH HOH . Z 5 HOH B 79 579 205 HOH HOH . Z 5 HOH B 80 580 182 HOH HOH . Z 5 HOH B 81 581 63 HOH HOH . Z 5 HOH B 82 582 153 HOH HOH . Z 5 HOH B 83 583 234 HOH HOH . Z 5 HOH B 84 584 251 HOH HOH . Z 5 HOH B 85 585 209 HOH HOH . Z 5 HOH B 86 586 154 HOH HOH . Z 5 HOH B 87 587 222 HOH HOH . Z 5 HOH B 88 588 170 HOH HOH . Z 5 HOH B 89 589 162 HOH HOH . Z 5 HOH B 90 590 250 HOH HOH . Z 5 HOH B 91 591 181 HOH HOH . Z 5 HOH B 92 592 155 HOH HOH . Z 5 HOH B 93 593 210 HOH HOH . Z 5 HOH B 94 594 145 HOH HOH . Z 5 HOH B 95 595 129 HOH HOH . Z 5 HOH B 96 596 212 HOH HOH . Z 5 HOH B 97 597 216 HOH HOH . Z 5 HOH B 98 598 211 HOH HOH . Z 5 HOH B 99 599 107 HOH HOH . Z 5 HOH B 100 600 108 HOH HOH . Z 5 HOH B 101 601 156 HOH HOH . Z 5 HOH B 102 602 183 HOH HOH . Z 5 HOH B 103 603 223 HOH HOH . Z 5 HOH B 104 604 167 HOH HOH . Z 5 HOH B 105 605 233 HOH HOH . Z 5 HOH B 106 606 247 HOH HOH . Z 5 HOH B 107 607 258 HOH HOH . Z 5 HOH B 108 608 166 HOH HOH . Z 5 HOH B 109 609 169 HOH HOH . Z 5 HOH B 110 610 204 HOH HOH . Z 5 HOH B 111 611 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 12.253 -13.066 10.701 1 51.62 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . E 3 13.071 -12.004 10.323 1 48.33 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . E 3 11.149 -12.483 11.613 1 42.15 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . E 3 10.141 -11.867 10.885 1 43.55 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . E 3 10.631 -13.688 12.43 1 40.98 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . E 3 9.484 -13.261 13.094 1 37.13 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #