data_8E7W # _model_server_result.job_id Scl2xt5rkaTA7RWEJkaHuw _model_server_result.datetime_utc '2024-11-12 21:52:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e7w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":201}' # _entry.id 8E7W # _exptl.entry_id 8E7W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.16 _cell.angle_gamma 90 _cell.entry_id 8E7W _cell.length_a 58.399 _cell.length_b 99.568 _cell.length_c 95.812 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E7W _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,V,W 1 1 C,R,S,T,U,X 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 41.497993 0 94.309572 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id L _struct_conn.ptnr1_label_atom_id FE _struct_conn.ptnr1_label_comp_id HEM _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id HEM _struct_conn.ptnr1_auth_seq_id 201 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id W _struct_conn.ptnr2_label_atom_id O _struct_conn.ptnr2_label_comp_id HOH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id HOH _struct_conn.ptnr2_auth_seq_id 336 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.651 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 8E7W _atom_sites.fract_transf_matrix[1][1] 0.017124 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003068 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 OLC A 1 201 201 OLC OLC . E 2 OLC A 1 202 203 OLC OLC . F 2 OLC A 1 203 204 OLC OLC . G 2 OLC A 1 204 205 OLC OLC . H 2 OLC A 1 205 206 OLC OLC . I 2 OLC A 1 206 208 OLC OLC . J 2 OLC A 1 207 219 OLC OLC . K 3 P6L A 1 208 1 P6L P6L . L 4 HEM B 1 201 1 HEM HEM . M 2 OLC B 1 202 207 OLC OLC . N 2 OLC B 1 203 209 OLC OLC . O 2 OLC B 1 204 210 OLC OLC . P 2 OLC B 1 205 211 OLC OLC . Q 2 OLC B 1 206 212 OLC OLC . R 2 OLC C 1 201 202 OLC OLC . S 2 OLC C 1 202 215 OLC OLC . T 2 OLC C 1 203 217 OLC OLC . U 2 OLC C 1 204 218 OLC OLC . V 5 HOH A 1 301 131 HOH HOH . V 5 HOH A 2 302 140 HOH HOH . V 5 HOH A 3 303 101 HOH HOH . V 5 HOH A 4 304 68 HOH HOH . V 5 HOH A 5 305 42 HOH HOH . V 5 HOH A 6 306 11 HOH HOH . V 5 HOH A 7 307 28 HOH HOH . V 5 HOH A 8 308 13 HOH HOH . V 5 HOH A 9 309 43 HOH HOH . V 5 HOH A 10 310 35 HOH HOH . V 5 HOH A 11 311 143 HOH HOH . V 5 HOH A 12 312 141 HOH HOH . V 5 HOH A 13 313 32 HOH HOH . V 5 HOH A 14 314 69 HOH HOH . V 5 HOH A 15 315 31 HOH HOH . V 5 HOH A 16 316 45 HOH HOH . V 5 HOH A 17 317 76 HOH HOH . V 5 HOH A 18 318 12 HOH HOH . V 5 HOH A 19 319 74 HOH HOH . V 5 HOH A 20 320 24 HOH HOH . V 5 HOH A 21 321 41 HOH HOH . V 5 HOH A 22 322 39 HOH HOH . V 5 HOH A 23 323 67 HOH HOH . V 5 HOH A 24 324 86 HOH HOH . V 5 HOH A 25 325 84 HOH HOH . V 5 HOH A 26 326 132 HOH HOH . V 5 HOH A 27 327 56 HOH HOH . V 5 HOH A 28 328 30 HOH HOH . V 5 HOH A 29 329 82 HOH HOH . V 5 HOH A 30 330 78 HOH HOH . V 5 HOH A 31 331 105 HOH HOH . V 5 HOH A 32 332 29 HOH HOH . V 5 HOH A 33 333 60 HOH HOH . V 5 HOH A 34 334 71 HOH HOH . V 5 HOH A 35 335 51 HOH HOH . V 5 HOH A 36 336 53 HOH HOH . V 5 HOH A 37 337 54 HOH HOH . V 5 HOH A 38 338 116 HOH HOH . V 5 HOH A 39 339 93 HOH HOH . V 5 HOH A 40 340 113 HOH HOH . V 5 HOH A 41 341 75 HOH HOH . W 5 HOH B 1 301 142 HOH HOH . W 5 HOH B 2 302 70 HOH HOH . W 5 HOH B 3 303 104 HOH HOH . W 5 HOH B 4 304 61 HOH HOH . W 5 HOH B 5 305 7 HOH HOH . W 5 HOH B 6 306 5 HOH HOH . W 5 HOH B 7 307 4 HOH HOH . W 5 HOH B 8 308 9 HOH HOH . W 5 HOH B 9 309 6 HOH HOH . W 5 HOH B 10 310 79 HOH HOH . W 5 HOH B 11 311 26 HOH HOH . W 5 HOH B 12 312 18 HOH HOH . W 5 HOH B 13 313 85 HOH HOH . W 5 HOH B 14 314 49 HOH HOH . W 5 HOH B 15 315 46 HOH HOH . W 5 HOH B 16 316 59 HOH HOH . W 5 HOH B 17 317 83 HOH HOH . W 5 HOH B 18 318 20 HOH HOH . W 5 HOH B 19 319 89 HOH HOH . W 5 HOH B 20 320 15 HOH HOH . W 5 HOH B 21 321 87 HOH HOH . W 5 HOH B 22 322 117 HOH HOH . W 5 HOH B 23 323 25 HOH HOH . W 5 HOH B 24 324 3 HOH HOH . W 5 HOH B 25 325 109 HOH HOH . W 5 HOH B 26 326 66 HOH HOH . W 5 HOH B 27 327 55 HOH HOH . W 5 HOH B 28 328 8 HOH HOH . W 5 HOH B 29 329 65 HOH HOH . W 5 HOH B 30 330 36 HOH HOH . W 5 HOH B 31 331 129 HOH HOH . W 5 HOH B 32 332 27 HOH HOH . W 5 HOH B 33 333 14 HOH HOH . W 5 HOH B 34 334 44 HOH HOH . W 5 HOH B 35 335 127 HOH HOH . W 5 HOH B 36 336 10 HOH HOH . W 5 HOH B 37 337 48 HOH HOH . W 5 HOH B 38 338 52 HOH HOH . W 5 HOH B 39 339 133 HOH HOH . W 5 HOH B 40 340 81 HOH HOH . W 5 HOH B 41 341 37 HOH HOH . W 5 HOH B 42 342 135 HOH HOH . W 5 HOH B 43 343 122 HOH HOH . W 5 HOH B 44 344 110 HOH HOH . W 5 HOH B 45 345 96 HOH HOH . W 5 HOH B 46 346 134 HOH HOH . W 5 HOH B 47 347 124 HOH HOH . W 5 HOH B 48 348 99 HOH HOH . W 5 HOH B 49 349 94 HOH HOH . W 5 HOH B 50 350 130 HOH HOH . W 5 HOH B 51 351 136 HOH HOH . X 5 HOH C 1 301 115 HOH HOH . X 5 HOH C 2 302 2 HOH HOH . X 5 HOH C 3 303 138 HOH HOH . X 5 HOH C 4 304 1 HOH HOH . X 5 HOH C 5 305 139 HOH HOH . X 5 HOH C 6 306 126 HOH HOH . X 5 HOH C 7 307 50 HOH HOH . X 5 HOH C 8 308 21 HOH HOH . X 5 HOH C 9 309 47 HOH HOH . X 5 HOH C 10 310 19 HOH HOH . X 5 HOH C 11 311 33 HOH HOH . X 5 HOH C 12 312 22 HOH HOH . X 5 HOH C 13 313 62 HOH HOH . X 5 HOH C 14 314 16 HOH HOH . X 5 HOH C 15 315 118 HOH HOH . X 5 HOH C 16 316 73 HOH HOH . X 5 HOH C 17 317 17 HOH HOH . X 5 HOH C 18 318 23 HOH HOH . X 5 HOH C 19 319 137 HOH HOH . X 5 HOH C 20 320 88 HOH HOH . X 5 HOH C 21 321 34 HOH HOH . X 5 HOH C 22 322 72 HOH HOH . X 5 HOH C 23 323 90 HOH HOH . X 5 HOH C 24 324 121 HOH HOH . X 5 HOH C 25 325 80 HOH HOH . X 5 HOH C 26 326 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . L 4 -20.053 31.839 16.951 1 42.17 ? CHA HEM 201 B 1 HETATM 2 C CHB HEM . . . L 4 -16.792 34.861 18.899 1 38.19 ? CHB HEM 201 B 1 HETATM 3 C CHC HEM . . . L 4 -17.933 33.175 23.305 1 33.52 ? CHC HEM 201 B 1 HETATM 4 C CHD HEM . . . L 4 -20.273 29.49 21.191 1 33.37 ? CHD HEM 201 B 1 HETATM 5 C C1A HEM . . . L 4 -19.186 32.9 17.113 1 39.43 ? C1A HEM 201 B 1 HETATM 6 C C2A HEM . . . L 4 -18.918 33.951 16.152 1 40.45 ? C2A HEM 201 B 1 HETATM 7 C C3A HEM . . . L 4 -18.021 34.786 16.687 1 39.31 ? C3A HEM 201 B 1 HETATM 8 C C4A HEM . . . L 4 -17.681 34.295 18.009 1 40.35 ? C4A HEM 201 B 1 HETATM 9 C CMA HEM . . . L 4 -17.442 36.052 16.019 1 32.56 ? CMA HEM 201 B 1 HETATM 10 C CAA HEM . . . L 4 -19.569 34.081 14.757 1 40.89 ? CAA HEM 201 B 1 HETATM 11 C CBA HEM . . . L 4 -18.712 33.388 13.701 1 46.79 ? CBA HEM 201 B 1 HETATM 12 C CGA HEM . . . L 4 -19.424 33.454 12.375 1 55.6 ? CGA HEM 201 B 1 HETATM 13 O O1A HEM . . . L 4 -20.572 33.966 12.34 1 57.39 ? O1A HEM 201 B 1 HETATM 14 O O2A HEM . . . L 4 -18.848 32.995 11.354 1 53.14 ? O2A HEM 201 B 1 HETATM 15 C C1B HEM . . . L 4 -16.813 34.684 20.267 1 37.88 ? C1B HEM 201 B 1 HETATM 16 C C2B HEM . . . L 4 -16.016 35.407 21.237 1 40.48 ? C2B HEM 201 B 1 HETATM 17 C C3B HEM . . . L 4 -16.325 34.941 22.464 1 39.32 ? C3B HEM 201 B 1 HETATM 18 C C4B HEM . . . L 4 -17.335 33.91 22.3 0.62 33.21 ? C4B HEM 201 B 1 HETATM 19 C CMB HEM . . . L 4 -15.004 36.504 20.84 1 39.96 ? CMB HEM 201 B 1 HETATM 20 C CAB HEM . . . L 4 -15.776 35.361 23.853 1 34.35 ? CAB HEM 201 B 1 HETATM 21 C CBB HEM . . . L 4 -14.915 36.362 24.07 1 36.79 ? CBB HEM 201 B 1 HETATM 22 C C1C HEM . . . L 4 -18.628 31.993 23.136 0.56 32.79 ? C1C HEM 201 B 1 HETATM 23 C C2C HEM . . . L 4 -19.035 31.067 24.178 0.73 31.88 ? C2C HEM 201 B 1 HETATM 24 C C3C HEM . . . L 4 -19.693 30.046 23.592 1 33.11 ? C3C HEM 201 B 1 HETATM 25 C C4C HEM . . . L 4 -19.705 30.293 22.161 1 35.49 ? C4C HEM 201 B 1 HETATM 26 C CMC HEM . . . L 4 -18.748 31.291 25.682 1 33.63 ? CMC HEM 201 B 1 HETATM 27 C CAC HEM . . . L 4 -20.33 28.78 24.226 1 38.58 ? CAC HEM 201 B 1 HETATM 28 C CBC HEM . . . L 4 -20.111 28.362 25.478 1 36.25 ? CBC HEM 201 B 1 HETATM 29 C C1D HEM . . . L 4 -20.552 29.881 19.897 1 36.29 ? C1D HEM 201 B 1 HETATM 30 C C2D HEM . . . L 4 -21.593 29.352 19.034 1 40.58 ? C2D HEM 201 B 1 HETATM 31 C C3D HEM . . . L 4 -21.529 30.004 17.86 1 43.86 ? C3D HEM 201 B 1 HETATM 32 C C4D HEM . . . L 4 -20.448 30.967 17.945 1 44.03 ? C4D HEM 201 B 1 HETATM 33 C CMD HEM . . . L 4 -22.584 28.232 19.432 1 44.67 ? CMD HEM 201 B 1 HETATM 34 C CAD HEM . . . L 4 -22.424 29.813 16.61 1 45.06 ? CAD HEM 201 B 1 HETATM 35 C CBD HEM . . . L 4 -22.256 28.43 15.99 1 47.77 ? CBD HEM 201 B 1 HETATM 36 C CGD HEM . . . L 4 -22.92 28.379 14.64 1 45.82 ? CGD HEM 201 B 1 HETATM 37 O O1D HEM . . . L 4 -23.358 27.272 14.238 1 50.54 ? O1D HEM 201 B 1 HETATM 38 O O2D HEM . . . L 4 -23.019 29.44 13.97 1 54.19 ? O2D HEM 201 B 1 HETATM 39 N NA HEM . . . L 4 -18.411 33.143 18.232 1 43.07 ? NA HEM 201 B 1 HETATM 40 N NB HEM . . . L 4 -17.603 33.783 20.952 0.6 33.4 ? NB HEM 201 B 1 HETATM 41 N NC HEM . . . L 4 -19.052 31.486 21.925 0.72 30.71 ? NC HEM 201 B 1 HETATM 42 N ND HEM . . . L 4 -19.877 30.863 19.199 1 39.01 ? ND HEM 201 B 1 HETATM 43 FE FE HEM . . . L 4 -18.659 32.282 20.077 0.77 32.35 ? FE HEM 201 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #