data_8E7W # _model_server_result.job_id ymDmhZcvL8kVk0_A-HsaPA _model_server_result.datetime_utc '2024-11-25 04:31:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e7w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":208}' # _entry.id 8E7W # _exptl.entry_id 8E7W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 746.991 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.16 _cell.angle_gamma 90 _cell.entry_id 8E7W _cell.length_a 58.399 _cell.length_b 99.568 _cell.length_c 95.812 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E7W _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,V,W 1 1 C,R,S,T,U,X 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 41.497993 0 94.309572 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id L _struct_conn.ptnr1_label_atom_id FE _struct_conn.ptnr1_label_comp_id HEM _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id HEM _struct_conn.ptnr1_auth_seq_id 201 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id W _struct_conn.ptnr2_label_atom_id O _struct_conn.ptnr2_label_comp_id HOH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id HOH _struct_conn.ptnr2_auth_seq_id 336 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.651 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C40 H75 O10 P' _chem_comp.formula_weight 746.991 _chem_comp.id P6L _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 P6L sing 362 n n C1 O12 P6L sing 363 n n C1 H11 P6L sing 364 n n C1 H12 P6L sing 365 n n C2 O3 P6L sing 366 n n C2 C50 P6L sing 367 n n C2 H2 P6L sing 368 n n O3 HO3 P6L sing 369 n n O4 C5 P6L sing 370 n n O4 C14 P6L sing 371 n n C5 C6 P6L sing 372 n n C5 C7 P6L sing 373 n n C5 H5 P6L sing 374 n n C6 O8 P6L sing 375 n n C6 H61 P6L sing 376 n n C6 H62 P6L sing 377 n n C7 O9 P6L sing 378 n n C7 H71 P6L sing 379 n n C7 H72 P6L sing 380 n n O8 C16 P6L sing 381 n n O9 P11 P6L sing 382 n n O10 P11 P6L doub 383 n n P11 O12 P6L sing 384 n n P11 O13 P6L sing 385 n n O13 H13 P6L sing 386 n n C14 O15 P6L doub 387 n n C14 C18 P6L sing 388 n n C16 O17 P6L doub 389 n n C16 C27 P6L sing 390 n n C18 C19 P6L sing 391 n n C18 H181 P6L sing 392 n n C18 H182 P6L sing 393 n n C19 C20 P6L sing 394 n n C19 H191 P6L sing 395 n n C19 H192 P6L sing 396 n n C20 C21 P6L sing 397 n n C20 H201 P6L sing 398 n n C20 H202 P6L sing 399 n n C21 C22 P6L sing 400 n n C21 H211 P6L sing 401 n n C21 H212 P6L sing 402 n n C22 C23 P6L doub 403 z n C22 H22 P6L sing 404 n n C23 C24 P6L sing 405 n n C23 H23 P6L sing 406 n n C24 C25 P6L sing 407 n n C24 H241 P6L sing 408 n n C24 H242 P6L sing 409 n n C25 C26 P6L sing 410 n n C25 H251 P6L sing 411 n n C25 H252 P6L sing 412 n n C26 C37 P6L sing 413 n n C26 H261 P6L sing 414 n n C26 H262 P6L sing 415 n n C27 C28 P6L sing 416 n n C27 H271 P6L sing 417 n n C27 H272 P6L sing 418 n n C28 C29 P6L sing 419 n n C28 H281 P6L sing 420 n n C28 H282 P6L sing 421 n n C29 C30 P6L sing 422 n n C29 H291 P6L sing 423 n n C29 H292 P6L sing 424 n n C30 C31 P6L sing 425 n n C30 H301 P6L sing 426 n n C30 H302 P6L sing 427 n n C31 C32 P6L sing 428 n n C31 H311 P6L sing 429 n n C31 H312 P6L sing 430 n n C32 C33 P6L sing 431 n n C32 H321 P6L sing 432 n n C32 H322 P6L sing 433 n n C33 C34 P6L doub 434 e n C33 H33 P6L sing 435 n n C34 C35 P6L sing 436 n n C34 H34 P6L sing 437 n n C35 C36 P6L sing 438 n n C35 H351 P6L sing 439 n n C35 H352 P6L sing 440 n n C36 C38 P6L sing 441 n n C36 H361 P6L sing 442 n n C36 H362 P6L sing 443 n n C37 C45 P6L sing 444 n n C37 H371 P6L sing 445 n n C37 H372 P6L sing 446 n n C38 C39 P6L sing 447 n n C38 H381 P6L sing 448 n n C38 H382 P6L sing 449 n n C39 C40 P6L sing 450 n n C39 H391 P6L sing 451 n n C39 H392 P6L sing 452 n n C40 C41 P6L sing 453 n n C40 H401 P6L sing 454 n n C40 H402 P6L sing 455 n n C41 C42 P6L sing 456 n n C41 H411 P6L sing 457 n n C41 H412 P6L sing 458 n n C42 C43 P6L sing 459 n n C42 H421 P6L sing 460 n n C42 H422 P6L sing 461 n n C43 C44 P6L sing 462 n n C43 H431 P6L sing 463 n n C43 H432 P6L sing 464 n n C44 H441 P6L sing 465 n n C44 H442 P6L sing 466 n n C44 H443 P6L sing 467 n n C45 C46 P6L sing 468 n n C45 H451 P6L sing 469 n n C45 H452 P6L sing 470 n n C46 C47 P6L sing 471 n n C46 H461 P6L sing 472 n n C46 H462 P6L sing 473 n n C47 C48 P6L sing 474 n n C47 H471 P6L sing 475 n n C47 H472 P6L sing 476 n n C48 C49 P6L sing 477 n n C48 H481 P6L sing 478 n n C48 H482 P6L sing 479 n n C49 H491 P6L sing 480 n n C49 H492 P6L sing 481 n n C49 H493 P6L sing 482 n n C50 O51 P6L sing 483 n n C50 H501 P6L sing 484 n n C50 H502 P6L sing 485 n n O51 H51 P6L sing 486 n n # _atom_sites.entry_id 8E7W _atom_sites.fract_transf_matrix[1][1] 0.017124 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003068 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 OLC A 1 201 201 OLC OLC . E 2 OLC A 1 202 203 OLC OLC . F 2 OLC A 1 203 204 OLC OLC . G 2 OLC A 1 204 205 OLC OLC . H 2 OLC A 1 205 206 OLC OLC . I 2 OLC A 1 206 208 OLC OLC . J 2 OLC A 1 207 219 OLC OLC . K 3 P6L A 1 208 1 P6L P6L . L 4 HEM B 1 201 1 HEM HEM . M 2 OLC B 1 202 207 OLC OLC . N 2 OLC B 1 203 209 OLC OLC . O 2 OLC B 1 204 210 OLC OLC . P 2 OLC B 1 205 211 OLC OLC . Q 2 OLC B 1 206 212 OLC OLC . R 2 OLC C 1 201 202 OLC OLC . S 2 OLC C 1 202 215 OLC OLC . T 2 OLC C 1 203 217 OLC OLC . U 2 OLC C 1 204 218 OLC OLC . V 5 HOH A 1 301 131 HOH HOH . V 5 HOH A 2 302 140 HOH HOH . V 5 HOH A 3 303 101 HOH HOH . V 5 HOH A 4 304 68 HOH HOH . V 5 HOH A 5 305 42 HOH HOH . V 5 HOH A 6 306 11 HOH HOH . V 5 HOH A 7 307 28 HOH HOH . V 5 HOH A 8 308 13 HOH HOH . V 5 HOH A 9 309 43 HOH HOH . V 5 HOH A 10 310 35 HOH HOH . V 5 HOH A 11 311 143 HOH HOH . V 5 HOH A 12 312 141 HOH HOH . V 5 HOH A 13 313 32 HOH HOH . V 5 HOH A 14 314 69 HOH HOH . V 5 HOH A 15 315 31 HOH HOH . V 5 HOH A 16 316 45 HOH HOH . V 5 HOH A 17 317 76 HOH HOH . V 5 HOH A 18 318 12 HOH HOH . V 5 HOH A 19 319 74 HOH HOH . V 5 HOH A 20 320 24 HOH HOH . V 5 HOH A 21 321 41 HOH HOH . V 5 HOH A 22 322 39 HOH HOH . V 5 HOH A 23 323 67 HOH HOH . V 5 HOH A 24 324 86 HOH HOH . V 5 HOH A 25 325 84 HOH HOH . V 5 HOH A 26 326 132 HOH HOH . V 5 HOH A 27 327 56 HOH HOH . V 5 HOH A 28 328 30 HOH HOH . V 5 HOH A 29 329 82 HOH HOH . V 5 HOH A 30 330 78 HOH HOH . V 5 HOH A 31 331 105 HOH HOH . V 5 HOH A 32 332 29 HOH HOH . V 5 HOH A 33 333 60 HOH HOH . V 5 HOH A 34 334 71 HOH HOH . V 5 HOH A 35 335 51 HOH HOH . V 5 HOH A 36 336 53 HOH HOH . V 5 HOH A 37 337 54 HOH HOH . V 5 HOH A 38 338 116 HOH HOH . V 5 HOH A 39 339 93 HOH HOH . V 5 HOH A 40 340 113 HOH HOH . V 5 HOH A 41 341 75 HOH HOH . W 5 HOH B 1 301 142 HOH HOH . W 5 HOH B 2 302 70 HOH HOH . W 5 HOH B 3 303 104 HOH HOH . W 5 HOH B 4 304 61 HOH HOH . W 5 HOH B 5 305 7 HOH HOH . W 5 HOH B 6 306 5 HOH HOH . W 5 HOH B 7 307 4 HOH HOH . W 5 HOH B 8 308 9 HOH HOH . W 5 HOH B 9 309 6 HOH HOH . W 5 HOH B 10 310 79 HOH HOH . W 5 HOH B 11 311 26 HOH HOH . W 5 HOH B 12 312 18 HOH HOH . W 5 HOH B 13 313 85 HOH HOH . W 5 HOH B 14 314 49 HOH HOH . W 5 HOH B 15 315 46 HOH HOH . W 5 HOH B 16 316 59 HOH HOH . W 5 HOH B 17 317 83 HOH HOH . W 5 HOH B 18 318 20 HOH HOH . W 5 HOH B 19 319 89 HOH HOH . W 5 HOH B 20 320 15 HOH HOH . W 5 HOH B 21 321 87 HOH HOH . W 5 HOH B 22 322 117 HOH HOH . W 5 HOH B 23 323 25 HOH HOH . W 5 HOH B 24 324 3 HOH HOH . W 5 HOH B 25 325 109 HOH HOH . W 5 HOH B 26 326 66 HOH HOH . W 5 HOH B 27 327 55 HOH HOH . W 5 HOH B 28 328 8 HOH HOH . W 5 HOH B 29 329 65 HOH HOH . W 5 HOH B 30 330 36 HOH HOH . W 5 HOH B 31 331 129 HOH HOH . W 5 HOH B 32 332 27 HOH HOH . W 5 HOH B 33 333 14 HOH HOH . W 5 HOH B 34 334 44 HOH HOH . W 5 HOH B 35 335 127 HOH HOH . W 5 HOH B 36 336 10 HOH HOH . W 5 HOH B 37 337 48 HOH HOH . W 5 HOH B 38 338 52 HOH HOH . W 5 HOH B 39 339 133 HOH HOH . W 5 HOH B 40 340 81 HOH HOH . W 5 HOH B 41 341 37 HOH HOH . W 5 HOH B 42 342 135 HOH HOH . W 5 HOH B 43 343 122 HOH HOH . W 5 HOH B 44 344 110 HOH HOH . W 5 HOH B 45 345 96 HOH HOH . W 5 HOH B 46 346 134 HOH HOH . W 5 HOH B 47 347 124 HOH HOH . W 5 HOH B 48 348 99 HOH HOH . W 5 HOH B 49 349 94 HOH HOH . W 5 HOH B 50 350 130 HOH HOH . W 5 HOH B 51 351 136 HOH HOH . X 5 HOH C 1 301 115 HOH HOH . X 5 HOH C 2 302 2 HOH HOH . X 5 HOH C 3 303 138 HOH HOH . X 5 HOH C 4 304 1 HOH HOH . X 5 HOH C 5 305 139 HOH HOH . X 5 HOH C 6 306 126 HOH HOH . X 5 HOH C 7 307 50 HOH HOH . X 5 HOH C 8 308 21 HOH HOH . X 5 HOH C 9 309 47 HOH HOH . X 5 HOH C 10 310 19 HOH HOH . X 5 HOH C 11 311 33 HOH HOH . X 5 HOH C 12 312 22 HOH HOH . X 5 HOH C 13 313 62 HOH HOH . X 5 HOH C 14 314 16 HOH HOH . X 5 HOH C 15 315 118 HOH HOH . X 5 HOH C 16 316 73 HOH HOH . X 5 HOH C 17 317 17 HOH HOH . X 5 HOH C 18 318 23 HOH HOH . X 5 HOH C 19 319 137 HOH HOH . X 5 HOH C 20 320 88 HOH HOH . X 5 HOH C 21 321 34 HOH HOH . X 5 HOH C 22 322 72 HOH HOH . X 5 HOH C 23 323 90 HOH HOH . X 5 HOH C 24 324 121 HOH HOH . X 5 HOH C 25 325 80 HOH HOH . X 5 HOH C 26 326 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 P6L . . . K 3 3.36 40.488 27.978 1 49.55 ? O4 P6L 208 A 1 HETATM 2 C C5 P6L . . . K 3 4.698 40.103 28.136 1 50.07 ? C5 P6L 208 A 1 HETATM 3 C C7 P6L . . . K 3 4.976 38.793 27.372 1 39.97 ? C7 P6L 208 A 1 HETATM 4 O O9 P6L . . . K 3 5.546 37.826 28.24 1 58 ? O9 P6L 208 A 1 HETATM 5 O O10 P6L . . . K 3 6.617 36.799 26.104 1 60.54 ? O10 P6L 208 A 1 HETATM 6 P P11 P6L . . . K 3 6.377 36.536 27.57 1 69.92 ? P11 P6L 208 A 1 HETATM 7 O O12 P6L . . . K 3 5.494 35.157 27.741 1 70.89 ? O12 P6L 208 A 1 HETATM 8 O O13 P6L . . . K 3 7.703 36.36 28.271 1 57.59 ? O13 P6L 208 A 1 HETATM 9 C C14 P6L . . . K 3 2.666 40.679 29.196 1 51.95 ? C14 P6L 208 A 1 HETATM 10 O O15 P6L . . . K 3 1.679 40.062 29.413 1 60.14 ? O15 P6L 208 A 1 HETATM 11 C C16 P6L . . . K 3 4.682 37.999 32.397 1 49.8 ? C16 P6L 208 A 1 HETATM 12 C C18 P6L . . . K 3 3.185 41.696 30.244 1 38.99 ? C18 P6L 208 A 1 HETATM 13 C C19 P6L . . . K 3 2.096 41.955 31.315 1 35.97 ? C19 P6L 208 A 1 HETATM 14 C C20 P6L . . . K 3 2.359 43.322 32 1 46.65 ? C20 P6L 208 A 1 HETATM 15 C C21 P6L . . . K 3 1.6 43.416 33.363 1 46.49 ? C21 P6L 208 A 1 HETATM 16 C C22 P6L . . . K 3 0.17 44.001 33.155 1 55.76 ? C22 P6L 208 A 1 HETATM 17 C C23 P6L . . . K 3 -0.354 44.881 34.054 1 53.18 ? C23 P6L 208 A 1 HETATM 18 C C24 P6L . . . K 3 -1.772 45.451 33.84 1 45.93 ? C24 P6L 208 A 1 HETATM 19 C C25 P6L . . . K 3 -1.821 46.942 34.277 1 48.67 ? C25 P6L 208 A 1 HETATM 20 C C26 P6L . . . K 3 -3.207 47.526 33.983 1 42.86 ? C26 P6L 208 A 1 HETATM 21 C C27 P6L . . . K 3 5.27 38.516 33.735 1 40.5 ? C27 P6L 208 A 1 HETATM 22 C C28 P6L . . . K 3 4.737 39.939 34.028 1 43.27 ? C28 P6L 208 A 1 HETATM 23 C C29 P6L . . . K 3 4.057 39.957 35.407 1 41.5 ? C29 P6L 208 A 1 HETATM 24 C C30 P6L . . . K 3 5.114 39.775 36.52 1 38.58 ? C30 P6L 208 A 1 HETATM 25 C C31 P6L . . . K 3 4.625 40.48 37.808 1 45.13 ? C31 P6L 208 A 1 HETATM 26 C C37 P6L . . . K 3 -3.078 49.036 33.768 1 42.27 ? C37 P6L 208 A 1 HETATM 27 C C45 P6L . . . K 3 -4.416 49.734 34.058 1 44 ? C45 P6L 208 A 1 HETATM 28 C C46 P6L . . . K 3 -4.148 51.199 34.409 1 39.31 ? C46 P6L 208 A 1 HETATM 29 C C47 P6L . . . K 3 -5.465 51.992 34.435 1 40.22 ? C47 P6L 208 A 1 HETATM 30 C C48 P6L . . . K 3 -5.25 53.303 35.185 1 38.99 ? C48 P6L 208 A 1 HETATM 31 C C49 P6L . . . K 3 -6.372 54.294 34.838 1 49.37 ? C49 P6L 208 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 31 #