data_8E7X # _model_server_result.job_id rbYBY1F2eY2EoN0IMmMSCA _model_server_result.datetime_utc '2025-02-16 17:07:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":202}' # _entry.id 8E7X # _exptl.entry_id 8E7X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.23 _cell.angle_gamma 90 _cell.entry_id 8E7X _cell.length_a 57.952 _cell.length_b 100.103 _cell.length_c 95.614 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,K,N,O 1 1 C,L,M,P 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -16.98105 0 94.094001 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id K _struct_conn.ptnr1_label_atom_id FE _struct_conn.ptnr1_label_comp_id HEM _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id HEM _struct_conn.ptnr1_auth_seq_id 202 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id O _struct_conn.ptnr2_label_atom_id O _struct_conn.ptnr2_label_comp_id HOH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id HOH _struct_conn.ptnr2_auth_seq_id 308 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.598 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 8E7X _atom_sites.fract_transf_matrix[1][1] 0.017256 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003114 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00999 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 OLC A 1 201 201 OLC OLC . E 2 OLC A 1 202 202 OLC OLC . F 2 OLC A 1 203 203 OLC OLC . G 2 OLC A 1 204 204 OLC OLC . H 2 OLC A 1 205 202 OLC OLC . I 2 OLC A 1 206 203 OLC OLC . J 2 OLC B 1 201 201 OLC OLC . K 3 HEM B 1 202 1 HEM HEM . L 2 OLC C 1 201 201 OLC OLC . M 2 OLC C 1 202 202 OLC OLC . N 4 HOH A 1 301 24 HOH HOH . N 4 HOH A 2 302 45 HOH HOH . N 4 HOH A 3 303 13 HOH HOH . N 4 HOH A 4 304 5 HOH HOH . N 4 HOH A 5 305 55 HOH HOH . N 4 HOH A 6 306 27 HOH HOH . N 4 HOH A 7 307 47 HOH HOH . N 4 HOH A 8 308 8 HOH HOH . N 4 HOH A 9 309 56 HOH HOH . N 4 HOH A 10 310 49 HOH HOH . N 4 HOH A 11 311 52 HOH HOH . N 4 HOH A 12 312 44 HOH HOH . N 4 HOH A 13 313 25 HOH HOH . N 4 HOH A 14 314 48 HOH HOH . N 4 HOH A 15 315 11 HOH HOH . N 4 HOH A 16 316 30 HOH HOH . N 4 HOH A 17 317 28 HOH HOH . N 4 HOH A 18 318 53 HOH HOH . N 4 HOH A 19 319 43 HOH HOH . N 4 HOH A 20 320 50 HOH HOH . O 4 HOH B 1 301 4 HOH HOH . O 4 HOH B 2 302 54 HOH HOH . O 4 HOH B 3 303 6 HOH HOH . O 4 HOH B 4 304 10 HOH HOH . O 4 HOH B 5 305 7 HOH HOH . O 4 HOH B 6 306 26 HOH HOH . O 4 HOH B 7 307 1 HOH HOH . O 4 HOH B 8 308 2 HOH HOH . O 4 HOH B 9 309 21 HOH HOH . O 4 HOH B 10 310 18 HOH HOH . O 4 HOH B 11 311 23 HOH HOH . O 4 HOH B 12 312 17 HOH HOH . O 4 HOH B 13 313 14 HOH HOH . O 4 HOH B 14 314 12 HOH HOH . O 4 HOH B 15 315 9 HOH HOH . O 4 HOH B 16 316 16 HOH HOH . O 4 HOH B 17 317 3 HOH HOH . O 4 HOH B 18 318 22 HOH HOH . O 4 HOH B 19 319 20 HOH HOH . O 4 HOH B 20 320 19 HOH HOH . P 4 HOH C 1 301 51 HOH HOH . P 4 HOH C 2 302 42 HOH HOH . P 4 HOH C 3 303 46 HOH HOH . P 4 HOH C 4 304 39 HOH HOH . P 4 HOH C 5 305 31 HOH HOH . P 4 HOH C 6 306 38 HOH HOH . P 4 HOH C 7 307 41 HOH HOH . P 4 HOH C 8 308 40 HOH HOH . P 4 HOH C 9 309 32 HOH HOH . P 4 HOH C 10 310 36 HOH HOH . P 4 HOH C 11 311 34 HOH HOH . P 4 HOH C 12 312 29 HOH HOH . P 4 HOH C 13 313 37 HOH HOH . P 4 HOH C 14 314 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . K 3 -49.076 -17.479 17.141 1 34.08 ? CHA HEM 202 B 1 HETATM 2 C CHB HEM . . . K 3 -45.733 -14.493 19.066 1 31.29 ? CHB HEM 202 B 1 HETATM 3 C CHC HEM . . . K 3 -46.939 -16.043 23.507 1 30.34 ? CHC HEM 202 B 1 HETATM 4 C CHD HEM . . . K 3 -49.138 -19.811 21.4 1 30.45 ? CHD HEM 202 B 1 HETATM 5 C C1A HEM . . . K 3 -48.177 -16.435 17.291 1 33.81 ? C1A HEM 202 B 1 HETATM 6 C C2A HEM . . . K 3 -47.863 -15.408 16.316 1 32.77 ? C2A HEM 202 B 1 HETATM 7 C C3A HEM . . . K 3 -46.95 -14.588 16.844 1 31.48 ? C3A HEM 202 B 1 HETATM 8 C C4A HEM . . . K 3 -46.633 -15.057 18.179 1 32.91 ? C4A HEM 202 B 1 HETATM 9 C CMA HEM . . . K 3 -46.338 -13.351 16.148 1 30.78 ? CMA HEM 202 B 1 HETATM 10 C CAA HEM . . . K 3 -48.493 -15.261 14.915 1 36.7 ? CAA HEM 202 B 1 HETATM 11 C CBA HEM . . . K 3 -47.81 -16.134 13.872 1 40.28 ? CBA HEM 202 B 1 HETATM 12 C CGA HEM . . . K 3 -48.358 -15.719 12.53 1 47.11 ? CGA HEM 202 B 1 HETATM 13 O O1A HEM . . . K 3 -49.179 -14.763 12.501 1 49.38 ? O1A HEM 202 B 1 HETATM 14 O O2A HEM . . . K 3 -47.975 -16.331 11.498 1 49.95 ? O2A HEM 202 B 1 HETATM 15 C C1B HEM . . . K 3 -45.77 -14.623 20.444 1 30.67 ? C1B HEM 202 B 1 HETATM 16 C C2B HEM . . . K 3 -44.991 -13.872 21.414 1 30.46 ? C2B HEM 202 B 1 HETATM 17 C C3B HEM . . . K 3 -45.328 -14.309 22.643 1 29.33 ? C3B HEM 202 B 1 HETATM 18 C C4B HEM . . . K 3 -46.331 -15.34 22.487 0.39 28.45 ? C4B HEM 202 B 1 HETATM 19 C CMB HEM . . . K 3 -43.969 -12.781 21.024 1 27.85 ? CMB HEM 202 B 1 HETATM 20 C CAB HEM . . . K 3 -44.826 -13.873 24.043 1 29.08 ? CAB HEM 202 B 1 HETATM 21 C CBB HEM . . . K 3 -43.961 -12.88 24.258 1 31.98 ? CBB HEM 202 B 1 HETATM 22 C C1C HEM . . . K 3 -47.599 -17.243 23.343 1 30.66 ? C1C HEM 202 B 1 HETATM 23 C C2C HEM . . . K 3 -47.996 -18.167 24.389 0.6 26.16 ? C2C HEM 202 B 1 HETATM 24 C C3C HEM . . . K 3 -48.626 -19.203 23.804 1 27.6 ? C3C HEM 202 B 1 HETATM 25 C C4C HEM . . . K 3 -48.61 -18.979 22.369 1 29.02 ? C4C HEM 202 B 1 HETATM 26 C CMC HEM . . . K 3 -47.746 -17.92 25.898 1 25.33 ? CMC HEM 202 B 1 HETATM 27 C CAC HEM . . . K 3 -49.226 -20.479 24.444 1 27.12 ? CAC HEM 202 B 1 HETATM 28 C CBC HEM . . . K 3 -48.754 -21.027 25.569 1 26.57 ? CBC HEM 202 B 1 HETATM 29 C C1D HEM . . . K 3 -49.45 -19.442 20.105 1 30.94 ? C1D HEM 202 B 1 HETATM 30 C C2D HEM . . . K 3 -50.469 -20.031 19.263 1 31.94 ? C2D HEM 202 B 1 HETATM 31 C C3D HEM . . . K 3 -50.458 -19.403 18.084 1 33.38 ? C3D HEM 202 B 1 HETATM 32 C C4D HEM . . . K 3 -49.43 -18.375 18.134 1 33.27 ? C4D HEM 202 B 1 HETATM 33 C CMD HEM . . . K 3 -51.399 -21.196 19.666 1 34.13 ? CMD HEM 202 B 1 HETATM 34 C CAD HEM . . . K 3 -51.406 -19.721 16.904 1 35.86 ? CAD HEM 202 B 1 HETATM 35 C CBD HEM . . . K 3 -50.696 -20.507 15.809 1 34.3 ? CBD HEM 202 B 1 HETATM 36 C CGD HEM . . . K 3 -51.664 -20.825 14.697 1 40.57 ? CGD HEM 202 B 1 HETATM 37 O O1D HEM . . . K 3 -52.319 -21.9 14.753 1 43.32 ? O1D HEM 202 B 1 HETATM 38 O O2D HEM . . . K 3 -51.778 -20.003 13.752 1 43.94 ? O2D HEM 202 B 1 HETATM 39 N NA HEM . . . K 3 -47.402 -16.184 18.412 1 35.66 ? NA HEM 202 B 1 HETATM 40 N NB HEM . . . K 3 -46.572 -15.503 21.14 0.77 28.58 ? NB HEM 202 B 1 HETATM 41 N NC HEM . . . K 3 -47.986 -17.774 22.129 0.77 27.47 ? NC HEM 202 B 1 HETATM 42 N ND HEM . . . K 3 -48.842 -18.436 19.382 1 29.47 ? ND HEM 202 B 1 HETATM 43 FE FE HEM . . . K 3 -47.683 -16.972 20.277 0.73 26.16 ? FE HEM 202 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 1213 _model_server_stats.encode_time_ms 24 _model_server_stats.element_count 43 #