data_8E7X # _model_server_result.job_id 2-d_F8wREMI0SL1xneSoHQ _model_server_result.datetime_utc '2024-11-25 07:23:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":203}' # _entry.id 8E7X # _exptl.entry_id 8E7X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.23 _cell.angle_gamma 90 _cell.entry_id 8E7X _cell.length_a 57.952 _cell.length_b 100.103 _cell.length_c 95.614 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,K,N,O 1 1 C,L,M,P 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -16.98105 0 94.094001 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 L N N ? 2 M N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id K _struct_conn.ptnr1_label_atom_id FE _struct_conn.ptnr1_label_comp_id HEM _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id HEM _struct_conn.ptnr1_auth_seq_id 202 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id O _struct_conn.ptnr2_label_atom_id O _struct_conn.ptnr2_label_comp_id HOH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id HOH _struct_conn.ptnr2_auth_seq_id 308 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.598 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 298 n n C10 C9 OLC doub 299 n n C10 C11 OLC sing 300 n n C9 C8 OLC sing 301 n n C17 C16 OLC sing 302 z n C11 C12 OLC sing 303 n n C8 C7 OLC sing 304 n n C24 C22 OLC sing 305 n n C24 O25 OLC sing 306 n n C16 C15 OLC sing 307 n n C12 C13 OLC sing 308 n n C7 C6 OLC sing 309 n n C15 C14 OLC sing 310 n n C13 C14 OLC sing 311 n n C6 C5 OLC sing 312 n n C5 C4 OLC sing 313 n n C4 C3 OLC sing 314 n n C3 C2 OLC sing 315 n n C2 C1 OLC sing 316 n n C21 C22 OLC sing 317 n n C21 O20 OLC sing 318 n n C1 O19 OLC doub 319 n n C1 O20 OLC sing 320 n n C22 O23 OLC sing 321 n n C18 H18 OLC sing 322 n n C18 H18A OLC sing 323 n n C18 H18B OLC sing 324 n n C10 H10 OLC sing 325 n n C9 H9 OLC sing 326 n n C17 H17 OLC sing 327 n n C17 H17A OLC sing 328 n n C11 H11 OLC sing 329 n n C11 H11A OLC sing 330 n n C8 H8 OLC sing 331 n n C8 H8A OLC sing 332 n n C24 H24 OLC sing 333 n n C24 H24A OLC sing 334 n n C16 H16 OLC sing 335 n n C16 H16A OLC sing 336 n n C12 H12 OLC sing 337 n n C12 H12A OLC sing 338 n n C7 H7 OLC sing 339 n n C7 H7A OLC sing 340 n n C15 H15 OLC sing 341 n n C15 H15A OLC sing 342 n n C13 H13 OLC sing 343 n n C13 H13A OLC sing 344 n n C6 H6 OLC sing 345 n n C6 H6A OLC sing 346 n n C14 H14 OLC sing 347 n n C14 H14A OLC sing 348 n n C5 H5 OLC sing 349 n n C5 H5A OLC sing 350 n n C4 H4 OLC sing 351 n n C4 H4A OLC sing 352 n n C3 H3 OLC sing 353 n n C3 H3A OLC sing 354 n n C2 H2 OLC sing 355 n n C2 H2A OLC sing 356 n n C21 H21 OLC sing 357 n n C21 H21A OLC sing 358 n n C22 H22 OLC sing 359 n n O25 HO25 OLC sing 360 n n O23 HO23 OLC sing 361 n n # _atom_sites.entry_id 8E7X _atom_sites.fract_transf_matrix[1][1] 0.017256 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003114 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00999 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 OLC A 1 201 201 OLC OLC . E 2 OLC A 1 202 202 OLC OLC . F 2 OLC A 1 203 203 OLC OLC . G 2 OLC A 1 204 204 OLC OLC . H 2 OLC A 1 205 202 OLC OLC . I 2 OLC A 1 206 203 OLC OLC . J 2 OLC B 1 201 201 OLC OLC . K 3 HEM B 1 202 1 HEM HEM . L 2 OLC C 1 201 201 OLC OLC . M 2 OLC C 1 202 202 OLC OLC . N 4 HOH A 1 301 24 HOH HOH . N 4 HOH A 2 302 45 HOH HOH . N 4 HOH A 3 303 13 HOH HOH . N 4 HOH A 4 304 5 HOH HOH . N 4 HOH A 5 305 55 HOH HOH . N 4 HOH A 6 306 27 HOH HOH . N 4 HOH A 7 307 47 HOH HOH . N 4 HOH A 8 308 8 HOH HOH . N 4 HOH A 9 309 56 HOH HOH . N 4 HOH A 10 310 49 HOH HOH . N 4 HOH A 11 311 52 HOH HOH . N 4 HOH A 12 312 44 HOH HOH . N 4 HOH A 13 313 25 HOH HOH . N 4 HOH A 14 314 48 HOH HOH . N 4 HOH A 15 315 11 HOH HOH . N 4 HOH A 16 316 30 HOH HOH . N 4 HOH A 17 317 28 HOH HOH . N 4 HOH A 18 318 53 HOH HOH . N 4 HOH A 19 319 43 HOH HOH . N 4 HOH A 20 320 50 HOH HOH . O 4 HOH B 1 301 4 HOH HOH . O 4 HOH B 2 302 54 HOH HOH . O 4 HOH B 3 303 6 HOH HOH . O 4 HOH B 4 304 10 HOH HOH . O 4 HOH B 5 305 7 HOH HOH . O 4 HOH B 6 306 26 HOH HOH . O 4 HOH B 7 307 1 HOH HOH . O 4 HOH B 8 308 2 HOH HOH . O 4 HOH B 9 309 21 HOH HOH . O 4 HOH B 10 310 18 HOH HOH . O 4 HOH B 11 311 23 HOH HOH . O 4 HOH B 12 312 17 HOH HOH . O 4 HOH B 13 313 14 HOH HOH . O 4 HOH B 14 314 12 HOH HOH . O 4 HOH B 15 315 9 HOH HOH . O 4 HOH B 16 316 16 HOH HOH . O 4 HOH B 17 317 3 HOH HOH . O 4 HOH B 18 318 22 HOH HOH . O 4 HOH B 19 319 20 HOH HOH . O 4 HOH B 20 320 19 HOH HOH . P 4 HOH C 1 301 51 HOH HOH . P 4 HOH C 2 302 42 HOH HOH . P 4 HOH C 3 303 46 HOH HOH . P 4 HOH C 4 304 39 HOH HOH . P 4 HOH C 5 305 31 HOH HOH . P 4 HOH C 6 306 38 HOH HOH . P 4 HOH C 7 307 41 HOH HOH . P 4 HOH C 8 308 40 HOH HOH . P 4 HOH C 9 309 32 HOH HOH . P 4 HOH C 10 310 36 HOH HOH . P 4 HOH C 11 311 34 HOH HOH . P 4 HOH C 12 312 29 HOH HOH . P 4 HOH C 13 313 37 HOH HOH . P 4 HOH C 14 314 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . F 2 -6.967 -19.709 15.268 1 55.47 ? C24 OLC 203 A 1 HETATM 2 C C3 OLC . . . F 2 -8.843 -13.957 18.959 1 49.86 ? C3 OLC 203 A 1 HETATM 3 C C2 OLC . . . F 2 -7.796 -14.713 18.171 1 48.96 ? C2 OLC 203 A 1 HETATM 4 C C21 OLC . . . F 2 -8.152 -17.644 15.985 1 47.97 ? C21 OLC 203 A 1 HETATM 5 C C1 OLC . . . F 2 -8.466 -15.577 17.125 1 52.83 ? C1 OLC 203 A 1 HETATM 6 C C22 OLC . . . F 2 -7.93 -19.115 16.27 1 50.29 ? C22 OLC 203 A 1 HETATM 7 O O19 OLC . . . F 2 -9.094 -15.058 16.223 1 58.16 ? O19 OLC 203 A 1 HETATM 8 O O25 OLC . . . F 2 -6.557 -20.981 15.719 1 59.18 ? O25 OLC 203 A 1 HETATM 9 O O23 OLC . . . F 2 -7.416 -19.277 17.572 1 53.13 ? O23 OLC 203 A 1 HETATM 10 O O20 OLC . . . F 2 -8.381 -16.979 17.207 1 50.12 ? O20 OLC 203 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #