data_8E7Y
#
_model_server_result.job_id            Pziq8HCeXY2vsSyAyyggQA 
_model_server_result.datetime_utc      '2024-11-07 08:59:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8e7y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":203}' 
#
_entry.id    8E7Y 
#
_exptl.entry_id    8E7Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8E7Y 
_cell.length_a            40.11 
_cell.length_b            95.35 
_cell.length_c            105.55 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8E7Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 J N N 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     8E7Y 
_atom_sites.fract_transf_matrix[1][1]    0.024931 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010488 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009474 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OLC B 1 201 201 OLC OLC . 
D 2 OLC B 1 202 204 OLC OLC . 
E 3 HEM B 1 203 1 HEM HEM . 
F 2 OLC A 1 201 202 OLC OLC . 
G 2 OLC A 1 202 203 OLC OLC . 
H 2 OLC A 1 203 201 OLC OLC . 
I 2 OLC A 1 204 202 OLC OLC . 
J 3 HEM A 1 205 1 HEM HEM . 
K 4 HOH B 1 301 7 HOH HOH . 
K 4 HOH B 2 302 13 HOH HOH . 
K 4 HOH B 3 303 8 HOH HOH . 
K 4 HOH B 4 304 14 HOH HOH . 
K 4 HOH B 5 305 6 HOH HOH . 
K 4 HOH B 6 306 3 HOH HOH . 
L 4 HOH A 1 301 15 HOH HOH . 
L 4 HOH A 2 302 4 HOH HOH . 
L 4 HOH A 3 303 5 HOH HOH . 
L 4 HOH A 4 304 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . E 3 -10.932 14.932 -30.608 1 63.79 ? CHA HEM 203 B 1 
HETATM 2 C CHB HEM . . . E 3 -9.669 11.692 -27.224 1 56.8 ? CHB HEM 203 B 1 
HETATM 3 C CHC HEM . . . E 3 -5.071 13.168 -27.675 1 50.84 ? CHC HEM 203 B 1 
HETATM 4 C CHD HEM . . . E 3 -6.69 17.168 -29.906 1 63.58 ? CHD HEM 203 B 1 
HETATM 5 C C1A HEM . . . E 3 -11.003 13.908 -29.69 1 61.6 ? C1A HEM 203 B 1 
HETATM 6 C C2A HEM . . . E 3 -12.183 13.147 -29.336 1 60.96 ? C2A HEM 203 B 1 
HETATM 7 C C3A HEM . . . E 3 -11.833 12.251 -28.408 1 56.96 ? C3A HEM 203 B 1 
HETATM 8 C C4A HEM . . . E 3 -10.42 12.412 -28.128 1 55.76 ? C4A HEM 203 B 1 
HETATM 9 C CMA HEM . . . E 3 -12.777 11.227 -27.747 1 59.28 ? CMA HEM 203 B 1 
HETATM 10 C CAA HEM . . . E 3 -13.594 13.325 -29.94 1 60.55 ? CAA HEM 203 B 1 
HETATM 11 C CBA HEM . . . E 3 -13.577 12.86 -31.392 1 66.85 ? CBA HEM 203 B 1 
HETATM 12 C CGA HEM . . . E 3 -14.965 12.924 -31.974 1 72.63 ? CGA HEM 203 B 1 
HETATM 13 O O1A HEM . . . E 3 -15.398 11.91 -32.582 1 76.09 ? O1A HEM 203 B 1 
HETATM 14 O O2A HEM . . . E 3 -15.64 13.977 -31.822 1 69.44 ? O2A HEM 203 B 1 
HETATM 15 C C1B HEM . . . E 3 -8.299 11.767 -27.076 1 54.53 ? C1B HEM 203 B 1 
HETATM 16 C C2B HEM . . . E 3 -7.469 10.878 -26.282 1 62.16 ? C2B HEM 203 B 1 
HETATM 17 C C3B HEM . . . E 3 -6.191 11.291 -26.403 1 57.67 ? C3B HEM 203 B 1 
HETATM 18 C C4B HEM . . . E 3 -6.181 12.444 -27.284 1 60.82 ? C4B HEM 203 B 1 
HETATM 19 C CMB HEM . . . E 3 -8.032 9.693 -25.46 1 51.62 ? CMB HEM 203 B 1 
HETATM 20 C CAB HEM . . . E 3 -4.896 10.714 -25.783 1 54.68 ? CAB HEM 203 B 1 
HETATM 21 C CBB HEM . . . E 3 -4.805 9.514 -25.201 1 65.38 ? CBB HEM 203 B 1 
HETATM 22 C C1C HEM . . . E 3 -5.103 14.426 -28.25 1 64.42 ? C1C HEM 203 B 1 
HETATM 23 C C2C HEM . . . E 3 -3.993 15.356 -28.367 1 61.44 ? C2C HEM 203 B 1 
HETATM 24 C C3C HEM . . . E 3 -4.442 16.468 -28.985 1 58.53 ? C3C HEM 203 B 1 
HETATM 25 C C4C HEM . . . E 3 -5.848 16.27 -29.276 1 64.25 ? C4C HEM 203 B 1 
HETATM 26 C CMC HEM . . . E 3 -2.569 15.048 -27.844 1 57.05 ? CMC HEM 203 B 1 
HETATM 27 C CAC HEM . . . E 3 -3.688 17.77 -29.368 1 61.84 ? CAC HEM 203 B 1 
HETATM 28 C CBC HEM . . . E 3 -2.405 18.023 -29.085 1 54.78 ? CBC HEM 203 B 1 
HETATM 29 C C1D HEM . . . E 3 -7.952 16.878 -30.39 1 62.69 ? C1D HEM 203 B 1 
HETATM 30 C C2D HEM . . . E 3 -8.706 17.642 -31.373 1 71.48 ? C2D HEM 203 B 1 
HETATM 31 C C3D HEM . . . E 3 -9.887 17.01 -31.575 1 71.69 ? C3D HEM 203 B 1 
HETATM 32 C C4D HEM . . . E 3 -9.905 15.845 -30.711 1 64.69 ? C4D HEM 203 B 1 
HETATM 33 C CMD HEM . . . E 3 -8.154 18.929 -32.036 1 60.32 ? CMD HEM 203 B 1 
HETATM 34 C CAD HEM . . . E 3 -11.094 17.356 -32.496 1 59.14 ? CAD HEM 203 B 1 
HETATM 35 C CBD HEM . . . E 3 -11.444 18.837 -32.564 1 66.06 ? CBD HEM 203 B 1 
HETATM 36 C CGD HEM . . . E 3 -12.54 19.084 -33.566 1 63.59 ? CGD HEM 203 B 1 
HETATM 37 O O1D HEM . . . E 3 -13.197 18.107 -34.008 1 60.6 ? O1D HEM 203 B 1 
HETATM 38 O O2D HEM . . . E 3 -12.768 20.273 -33.908 1 62.76 ? O2D HEM 203 B 1 
HETATM 39 N NA HEM . . . E 3 -9.95 13.435 -28.93 1 62.78 ? NA HEM 203 B 1 
HETATM 40 N NB HEM . . . E 3 -7.481 12.704 -27.671 0.69 55.1 ? NB HEM 203 B 1 
HETATM 41 N NC HEM . . . E 3 -6.212 15.021 -28.814 1 60.95 ? NC HEM 203 B 1 
HETATM 42 N ND HEM . . . E 3 -8.717 15.795 -30.011 1 64.04 ? ND HEM 203 B 1 
HETATM 43 FE FE HEM . . . E 3 -8.041 14.157 -29.018 0.63 52.96 ? FE HEM 203 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           43 
#