data_8E7Y # _model_server_result.job_id mQFrzkMjUpwfJMNNX4lD2g _model_server_result.datetime_utc '2024-11-25 07:27:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e7y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":204}' # _entry.id 8E7Y # _exptl.entry_id 8E7Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8E7Y _cell.length_a 40.11 _cell.length_b 95.35 _cell.length_c 105.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E7Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 298 n n C10 C9 OLC doub 299 n n C10 C11 OLC sing 300 n n C9 C8 OLC sing 301 n n C17 C16 OLC sing 302 z n C11 C12 OLC sing 303 n n C8 C7 OLC sing 304 n n C24 C22 OLC sing 305 n n C24 O25 OLC sing 306 n n C16 C15 OLC sing 307 n n C12 C13 OLC sing 308 n n C7 C6 OLC sing 309 n n C15 C14 OLC sing 310 n n C13 C14 OLC sing 311 n n C6 C5 OLC sing 312 n n C5 C4 OLC sing 313 n n C4 C3 OLC sing 314 n n C3 C2 OLC sing 315 n n C2 C1 OLC sing 316 n n C21 C22 OLC sing 317 n n C21 O20 OLC sing 318 n n C1 O19 OLC doub 319 n n C1 O20 OLC sing 320 n n C22 O23 OLC sing 321 n n C18 H18 OLC sing 322 n n C18 H18A OLC sing 323 n n C18 H18B OLC sing 324 n n C10 H10 OLC sing 325 n n C9 H9 OLC sing 326 n n C17 H17 OLC sing 327 n n C17 H17A OLC sing 328 n n C11 H11 OLC sing 329 n n C11 H11A OLC sing 330 n n C8 H8 OLC sing 331 n n C8 H8A OLC sing 332 n n C24 H24 OLC sing 333 n n C24 H24A OLC sing 334 n n C16 H16 OLC sing 335 n n C16 H16A OLC sing 336 n n C12 H12 OLC sing 337 n n C12 H12A OLC sing 338 n n C7 H7 OLC sing 339 n n C7 H7A OLC sing 340 n n C15 H15 OLC sing 341 n n C15 H15A OLC sing 342 n n C13 H13 OLC sing 343 n n C13 H13A OLC sing 344 n n C6 H6 OLC sing 345 n n C6 H6A OLC sing 346 n n C14 H14 OLC sing 347 n n C14 H14A OLC sing 348 n n C5 H5 OLC sing 349 n n C5 H5A OLC sing 350 n n C4 H4 OLC sing 351 n n C4 H4A OLC sing 352 n n C3 H3 OLC sing 353 n n C3 H3A OLC sing 354 n n C2 H2 OLC sing 355 n n C2 H2A OLC sing 356 n n C21 H21 OLC sing 357 n n C21 H21A OLC sing 358 n n C22 H22 OLC sing 359 n n O25 HO25 OLC sing 360 n n O23 HO23 OLC sing 361 n n # _atom_sites.entry_id 8E7Y _atom_sites.fract_transf_matrix[1][1] 0.024931 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OLC B 1 201 201 OLC OLC . D 2 OLC B 1 202 204 OLC OLC . E 3 HEM B 1 203 1 HEM HEM . F 2 OLC A 1 201 202 OLC OLC . G 2 OLC A 1 202 203 OLC OLC . H 2 OLC A 1 203 201 OLC OLC . I 2 OLC A 1 204 202 OLC OLC . J 3 HEM A 1 205 1 HEM HEM . K 4 HOH B 1 301 7 HOH HOH . K 4 HOH B 2 302 13 HOH HOH . K 4 HOH B 3 303 8 HOH HOH . K 4 HOH B 4 304 14 HOH HOH . K 4 HOH B 5 305 6 HOH HOH . K 4 HOH B 6 306 3 HOH HOH . L 4 HOH A 1 301 15 HOH HOH . L 4 HOH A 2 302 4 HOH HOH . L 4 HOH A 3 303 5 HOH HOH . L 4 HOH A 4 304 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . I 2 2.556 -4.715 -17.314 1 61.67 ? C18 OLC 204 A 1 HETATM 2 C C10 OLC . . . I 2 -0.078 2.177 -13.742 1 77.01 ? C10 OLC 204 A 1 HETATM 3 C C9 OLC . . . I 2 -0.895 3.059 -13.129 1 70.03 ? C9 OLC 204 A 1 HETATM 4 C C17 OLC . . . I 2 2.655 -3.419 -16.539 1 73.98 ? C17 OLC 204 A 1 HETATM 5 C C11 OLC . . . I 2 1.412 2.422 -13.83 1 70.57 ? C11 OLC 204 A 1 HETATM 6 C C8 OLC . . . I 2 -0.343 4.328 -12.52 1 76.96 ? C8 OLC 204 A 1 HETATM 7 C C16 OLC . . . I 2 1.603 -2.44 -17.018 1 68.67 ? C16 OLC 204 A 1 HETATM 8 C C12 OLC . . . I 2 2.047 1.429 -14.784 1 75.31 ? C12 OLC 204 A 1 HETATM 9 C C7 OLC . . . I 2 -0.296 4.144 -11.022 1 77.65 ? C7 OLC 204 A 1 HETATM 10 C C15 OLC . . . I 2 1.887 -1.065 -16.441 1 80.51 ? C15 OLC 204 A 1 HETATM 11 C C13 OLC . . . I 2 2.039 0.027 -14.208 1 77.99 ? C13 OLC 204 A 1 HETATM 12 C C6 OLC . . . I 2 -1.462 4.835 -10.347 1 65.97 ? C6 OLC 204 A 1 HETATM 13 C C14 OLC . . . I 2 1.227 -0.908 -15.084 1 75.8 ? C14 OLC 204 A 1 HETATM 14 C C5 OLC . . . I 2 -1.741 6.204 -10.934 1 64.88 ? C5 OLC 204 A 1 HETATM 15 C C4 OLC . . . I 2 -1.967 7.144 -9.766 1 68.35 ? C4 OLC 204 A 1 HETATM 16 C C3 OLC . . . I 2 -3.095 6.589 -8.919 1 74.65 ? C3 OLC 204 A 1 HETATM 17 C C2 OLC . . . I 2 -3.018 7.041 -7.471 1 72.96 ? C2 OLC 204 A 1 HETATM 18 C C21 OLC . . . I 2 -4.241 10.189 -5.81 1 73.17 ? C21 OLC 204 A 1 HETATM 19 C C1 OLC . . . I 2 -3.518 8.456 -7.259 1 82.11 ? C1 OLC 204 A 1 HETATM 20 C C22 OLC . . . I 2 -4.428 10.462 -4.334 1 77.35 ? C22 OLC 204 A 1 HETATM 21 O O19 OLC . . . I 2 -3.406 9.293 -8.132 1 87.84 ? O19 OLC 204 A 1 HETATM 22 O O23 OLC . . . I 2 -3.706 11.617 -3.967 1 80.03 ? O23 OLC 204 A 1 HETATM 23 O O20 OLC . . . I 2 -4.121 8.802 -6.031 1 79.18 ? O20 OLC 204 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #