data_8E7Z # _model_server_result.job_id TwPPsru5ahUEiKZ-f5cETw _model_server_result.datetime_utc '2024-11-28 23:01:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e7z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":201}' # _entry.id 8E7Z # _exptl.entry_id 8E7Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.12 _cell.angle_gamma 90 _cell.entry_id 8E7Z _cell.length_a 58.553 _cell.length_b 99.535 _cell.length_c 95.484 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E7Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,K,L,M,S,T 1 1,2 C,N,O,P,Q,R,U 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -58.553 0 0 3 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -16.777529 0 93.998451 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 216 n n C10 C9 OLC doub 217 n n C10 C11 OLC sing 218 n n C9 C8 OLC sing 219 n n C17 C16 OLC sing 220 z n C11 C12 OLC sing 221 n n C8 C7 OLC sing 222 n n C24 C22 OLC sing 223 n n C24 O25 OLC sing 224 n n C16 C15 OLC sing 225 n n C12 C13 OLC sing 226 n n C7 C6 OLC sing 227 n n C15 C14 OLC sing 228 n n C13 C14 OLC sing 229 n n C6 C5 OLC sing 230 n n C5 C4 OLC sing 231 n n C4 C3 OLC sing 232 n n C3 C2 OLC sing 233 n n C2 C1 OLC sing 234 n n C21 C22 OLC sing 235 n n C21 O20 OLC sing 236 n n C1 O19 OLC doub 237 n n C1 O20 OLC sing 238 n n C22 O23 OLC sing 239 n n C18 H18 OLC sing 240 n n C18 H18A OLC sing 241 n n C18 H18B OLC sing 242 n n C10 H10 OLC sing 243 n n C9 H9 OLC sing 244 n n C17 H17 OLC sing 245 n n C17 H17A OLC sing 246 n n C11 H11 OLC sing 247 n n C11 H11A OLC sing 248 n n C8 H8 OLC sing 249 n n C8 H8A OLC sing 250 n n C24 H24 OLC sing 251 n n C24 H24A OLC sing 252 n n C16 H16 OLC sing 253 n n C16 H16A OLC sing 254 n n C12 H12 OLC sing 255 n n C12 H12A OLC sing 256 n n C7 H7 OLC sing 257 n n C7 H7A OLC sing 258 n n C15 H15 OLC sing 259 n n C15 H15A OLC sing 260 n n C13 H13 OLC sing 261 n n C13 H13A OLC sing 262 n n C6 H6 OLC sing 263 n n C6 H6A OLC sing 264 n n C14 H14 OLC sing 265 n n C14 H14A OLC sing 266 n n C5 H5 OLC sing 267 n n C5 H5A OLC sing 268 n n C4 H4 OLC sing 269 n n C4 H4A OLC sing 270 n n C3 H3 OLC sing 271 n n C3 H3A OLC sing 272 n n C2 H2 OLC sing 273 n n C2 H2A OLC sing 274 n n C21 H21 OLC sing 275 n n C21 H21A OLC sing 276 n n C22 H22 OLC sing 277 n n O25 HO25 OLC sing 278 n n O23 HO23 OLC sing 279 n n # _atom_sites.entry_id 8E7Z _atom_sites.fract_transf_matrix[1][1] 0.017078 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003048 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 OLC A 1 201 1 OLC OLC . E 2 OLC A 1 202 3 OLC OLC . F 2 OLC A 1 203 4 OLC OLC . G 2 OLC A 1 204 5 OLC OLC . H 2 OLC A 1 205 6 OLC OLC . I 2 OLC A 1 206 14 OLC OLC . J 2 OLC B 1 201 7 OLC OLC . K 2 OLC B 1 202 8 OLC OLC . L 2 OLC B 1 203 10 OLC OLC . M 2 OLC B 1 204 15 OLC OLC . N 3 PEG C 1 201 201 PEG PEG . O 2 OLC C 1 202 2 OLC OLC . P 2 OLC C 1 203 11 OLC OLC . Q 2 OLC C 1 204 12 OLC OLC . R 2 OLC C 1 205 13 OLC OLC . S 4 HOH A 1 301 54 HOH HOH . S 4 HOH A 2 302 21 HOH HOH . S 4 HOH A 3 303 53 HOH HOH . S 4 HOH A 4 304 10 HOH HOH . S 4 HOH A 5 305 47 HOH HOH . S 4 HOH A 6 306 51 HOH HOH . S 4 HOH A 7 307 7 HOH HOH . S 4 HOH A 8 308 4 HOH HOH . S 4 HOH A 9 309 17 HOH HOH . S 4 HOH A 10 310 1 HOH HOH . S 4 HOH A 11 311 48 HOH HOH . S 4 HOH A 12 312 9 HOH HOH . S 4 HOH A 13 313 27 HOH HOH . S 4 HOH A 14 314 37 HOH HOH . S 4 HOH A 15 315 43 HOH HOH . S 4 HOH A 16 316 49 HOH HOH . T 4 HOH B 1 301 23 HOH HOH . T 4 HOH B 2 302 24 HOH HOH . T 4 HOH B 3 303 5 HOH HOH . T 4 HOH B 4 304 55 HOH HOH . T 4 HOH B 5 305 15 HOH HOH . T 4 HOH B 6 306 32 HOH HOH . T 4 HOH B 7 307 31 HOH HOH . T 4 HOH B 8 308 52 HOH HOH . T 4 HOH B 9 309 28 HOH HOH . T 4 HOH B 10 310 30 HOH HOH . T 4 HOH B 11 311 29 HOH HOH . T 4 HOH B 12 312 50 HOH HOH . U 4 HOH C 1 301 45 HOH HOH . U 4 HOH C 2 302 2 HOH HOH . U 4 HOH C 3 303 39 HOH HOH . U 4 HOH C 4 304 26 HOH HOH . U 4 HOH C 5 305 12 HOH HOH . U 4 HOH C 6 306 18 HOH HOH . U 4 HOH C 7 307 56 HOH HOH . U 4 HOH C 8 308 33 HOH HOH . U 4 HOH C 9 309 25 HOH HOH . U 4 HOH C 10 310 3 HOH HOH . U 4 HOH C 11 311 22 HOH HOH . U 4 HOH C 12 312 41 HOH HOH . U 4 HOH C 13 313 35 HOH HOH . U 4 HOH C 14 314 16 HOH HOH . U 4 HOH C 15 315 40 HOH HOH . U 4 HOH C 16 316 8 HOH HOH . U 4 HOH C 17 317 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . J 2 -47.863 -9.83 35.37 1 30.74 ? C18 OLC 201 B 1 HETATM 2 C C10 OLC . . . J 2 -49.422 -1.749 36.778 1 38.84 ? C10 OLC 201 B 1 HETATM 3 C C9 OLC . . . J 2 -49.153 -0.898 35.766 1 41.03 ? C9 OLC 201 B 1 HETATM 4 C C17 OLC . . . J 2 -47.821 -8.81 36.487 1 39.31 ? C17 OLC 201 B 1 HETATM 5 C C11 OLC . . . J 2 -50.319 -2.941 36.513 1 47.87 ? C11 OLC 201 B 1 HETATM 6 C C8 OLC . . . J 2 -48.266 0.312 35.972 1 48.05 ? C8 OLC 201 B 1 HETATM 7 C C24 OLC . . . J 2 -49.921 12.063 32.186 1 48.26 ? C24 OLC 201 B 1 HETATM 8 C C16 OLC . . . J 2 -49.191 -8.186 36.663 1 48.53 ? C16 OLC 201 B 1 HETATM 9 C C12 OLC . . . J 2 -49.956 -4.108 37.407 1 51.68 ? C12 OLC 201 B 1 HETATM 10 C C7 OLC . . . J 2 -49.084 1.565 35.737 1 50.2 ? C7 OLC 201 B 1 HETATM 11 C C15 OLC . . . J 2 -49.117 -7.07 37.685 1 49.13 ? C15 OLC 201 B 1 HETATM 12 C C13 OLC . . . J 2 -50.726 -5.331 36.952 1 52.51 ? C13 OLC 201 B 1 HETATM 13 C C6 OLC . . . J 2 -48.202 2.673 35.202 1 45.95 ? C6 OLC 201 B 1 HETATM 14 C C14 OLC . . . J 2 -50.494 -6.481 37.909 1 46.25 ? C14 OLC 201 B 1 HETATM 15 C C5 OLC . . . J 2 -49.068 3.723 34.536 1 41.48 ? C5 OLC 201 B 1 HETATM 16 C C4 OLC . . . J 2 -48.942 5.037 35.274 1 37.32 ? C4 OLC 201 B 1 HETATM 17 C C3 OLC . . . J 2 -48.618 6.143 34.294 1 34.44 ? C3 OLC 201 B 1 HETATM 18 C C2 OLC . . . J 2 -49.502 7.329 34.601 1 47.92 ? C2 OLC 201 B 1 HETATM 19 C C21 OLC . . . J 2 -49.041 10.789 34.135 1 44.6 ? C21 OLC 201 B 1 HETATM 20 C C1 OLC . . . J 2 -48.697 8.575 34.904 1 54.06 ? C1 OLC 201 B 1 HETATM 21 C C22 OLC . . . J 2 -50.21 10.974 33.195 1 50.85 ? C22 OLC 201 B 1 HETATM 22 O O19 OLC . . . J 2 -48.248 8.761 36.02 1 54.77 ? O19 OLC 201 B 1 HETATM 23 O O25 OLC . . . J 2 -50.801 11.921 31.091 1 51.02 ? O25 OLC 201 B 1 HETATM 24 O O23 OLC . . . J 2 -50.437 9.76 32.517 1 48.46 ? O23 OLC 201 B 1 HETATM 25 O O20 OLC . . . J 2 -48.487 9.519 33.884 1 52.67 ? O20 OLC 201 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 25 #