data_8E8O # _model_server_result.job_id B1_zan6_lMt3Ot-ahjYf3w _model_server_result.datetime_utc '2025-02-27 21:26:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 8E8O # _exptl.entry_id 8E8O _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8E8O _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 235 n n PA O2A NAP sing 236 n n PA O5B NAP sing 237 n n PA O3 NAP sing 238 n n O2A HOA2 NAP sing 239 n n O5B C5B NAP sing 240 n n C5B C4B NAP sing 241 n n C5B H51A NAP sing 242 n n C5B H52A NAP sing 243 n n C4B O4B NAP sing 244 n n C4B C3B NAP sing 245 n n C4B H4B NAP sing 246 n n O4B C1B NAP sing 247 n n C3B O3B NAP sing 248 n n C3B C2B NAP sing 249 n n C3B H3B NAP sing 250 n n O3B HO3A NAP sing 251 n n C2B O2B NAP sing 252 n n C2B C1B NAP sing 253 n n C2B H2B NAP sing 254 n n O2B P2B NAP sing 255 n n C1B N9A NAP sing 256 n n C1B H1B NAP sing 257 n n N9A C8A NAP sing 258 n y N9A C4A NAP sing 259 n y C8A N7A NAP doub 260 n y C8A H8A NAP sing 261 n n N7A C5A NAP sing 262 n y C5A C6A NAP sing 263 n y C5A C4A NAP doub 264 n y C6A N6A NAP sing 265 n n C6A N1A NAP doub 266 n y N6A H61A NAP sing 267 n n N6A H62A NAP sing 268 n n N1A C2A NAP sing 269 n y C2A N3A NAP doub 270 n y C2A H2A NAP sing 271 n n N3A C4A NAP sing 272 n y O3 PN NAP sing 273 n n PN O1N NAP doub 274 n n PN O2N NAP sing 275 n n PN O5D NAP sing 276 n n O5D C5D NAP sing 277 n n C5D C4D NAP sing 278 n n C5D H51N NAP sing 279 n n C5D H52N NAP sing 280 n n C4D O4D NAP sing 281 n n C4D C3D NAP sing 282 n n C4D H4D NAP sing 283 n n O4D C1D NAP sing 284 n n C3D O3D NAP sing 285 n n C3D C2D NAP sing 286 n n C3D H3D NAP sing 287 n n O3D HO3N NAP sing 288 n n C2D O2D NAP sing 289 n n C2D C1D NAP sing 290 n n C2D H2D NAP sing 291 n n O2D HO2N NAP sing 292 n n C1D N1N NAP sing 293 n n C1D H1D NAP sing 294 n n N1N C2N NAP sing 295 n y N1N C6N NAP doub 296 n y C2N C3N NAP doub 297 n y C2N H2N NAP sing 298 n n C3N C7N NAP sing 299 n n C3N C4N NAP sing 300 n y C7N O7N NAP doub 301 n n C7N N7N NAP sing 302 n n N7N H71N NAP sing 303 n n N7N H72N NAP sing 304 n n C4N C5N NAP doub 305 n y C4N H4N NAP sing 306 n n C5N C6N NAP sing 307 n y C5N H5N NAP sing 308 n n C6N H6N NAP sing 309 n n P2B O1X NAP doub 310 n n P2B O2X NAP sing 311 n n P2B O3X NAP sing 312 n n O2X HOP2 NAP sing 313 n n O3X HOP3 NAP sing 314 n n # _atom_sites.entry_id 8E8O _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 601 601 NAP NAP . F 2 NAP B 1 601 601 NAP NAP . G 2 NAP C 1 601 601 NAP NAP . H 2 NAP D 1 601 601 NAP NAP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . F 2 72.365 87.769 69.665 1 69.76 ? PA NAP 601 B 1 HETATM 2 O O1A NAP . . . F 2 72.647 86.85 70.823 1 69.76 ? O1A NAP 601 B 1 HETATM 3 O O2A NAP . . . F 2 73.445 88.109 68.672 1 69.76 ? O2A NAP 601 B 1 HETATM 4 O O5B NAP . . . F 2 71.09 87.225 68.866 1 69.76 ? O5B NAP 601 B 1 HETATM 5 C C5B NAP . . . F 2 70.9 87.61 67.508 1 69.76 ? C5B NAP 601 B 1 HETATM 6 C C4B NAP . . . F 2 69.518 87.145 67.09 1 69.76 ? C4B NAP 601 B 1 HETATM 7 O O4B NAP . . . F 2 69.291 87.418 65.71 1 69.76 ? O4B NAP 601 B 1 HETATM 8 C C3B NAP . . . F 2 69.412 85.644 67.273 1 69.76 ? C3B NAP 601 B 1 HETATM 9 O O3B NAP . . . F 2 68.414 85.342 68.25 1 69.76 ? O3B NAP 601 B 1 HETATM 10 C C2B NAP . . . F 2 68.995 85.084 65.934 1 69.76 ? C2B NAP 601 B 1 HETATM 11 O O2B NAP . . . F 2 67.88 84.231 66.151 1 69.76 ? O2B NAP 601 B 1 HETATM 12 C C1B NAP . . . F 2 68.634 86.306 65.107 1 69.76 ? C1B NAP 601 B 1 HETATM 13 N N9A NAP . . . F 2 69.099 86.127 63.713 1 69.76 ? N9A NAP 601 B 1 HETATM 14 C C8A NAP . . . F 2 70.278 85.607 63.335 1 69.76 ? C8A NAP 601 B 1 HETATM 15 N N7A NAP . . . F 2 70.382 85.57 61.984 1 69.76 ? N7A NAP 601 B 1 HETATM 16 C C5A NAP . . . F 2 69.245 86.077 61.481 1 69.76 ? C5A NAP 601 B 1 HETATM 17 C C6A NAP . . . F 2 68.697 86.332 60.132 1 69.76 ? C6A NAP 601 B 1 HETATM 18 N N6A NAP . . . F 2 69.409 86.027 59.023 1 69.76 ? N6A NAP 601 B 1 HETATM 19 N N1A NAP . . . F 2 67.467 86.877 60.044 1 69.76 ? N1A NAP 601 B 1 HETATM 20 C C2A NAP . . . F 2 66.752 87.183 61.139 1 69.76 ? C2A NAP 601 B 1 HETATM 21 N N3A NAP . . . F 2 67.186 86.978 62.392 1 69.76 ? N3A NAP 601 B 1 HETATM 22 C C4A NAP . . . F 2 68.401 86.436 62.624 1 69.76 ? C4A NAP 601 B 1 HETATM 23 O O3 NAP . . . F 2 71.764 89.127 70.254 1 69.76 ? O3 NAP 601 B 1 HETATM 24 P PN NAP . . . F 2 72.727 90.378 70.501 1 69.76 ? PN NAP 601 B 1 HETATM 25 O O1N NAP . . . F 2 74.131 89.88 70.718 1 69.76 ? O1N NAP 601 B 1 HETATM 26 O O2N NAP . . . F 2 72.09 91.298 71.504 1 69.76 ? O2N NAP 601 B 1 HETATM 27 O O5D NAP . . . F 2 72.626 91.069 69.062 1 69.76 ? O5D NAP 601 B 1 HETATM 28 C C5D NAP . . . F 2 71.927 92.294 68.93 1 69.76 ? C5D NAP 601 B 1 HETATM 29 C C4D NAP . . . F 2 72.534 93.083 67.788 1 69.76 ? C4D NAP 601 B 1 HETATM 30 O O4D NAP . . . F 2 72.238 94.459 67.998 1 69.76 ? O4D NAP 601 B 1 HETATM 31 C C3D NAP . . . F 2 74.039 92.928 67.792 1 69.76 ? C3D NAP 601 B 1 HETATM 32 O O3D NAP . . . F 2 74.457 92.327 66.569 1 69.76 ? O3D NAP 601 B 1 HETATM 33 C C2D NAP . . . F 2 74.609 94.322 67.888 1 69.76 ? C2D NAP 601 B 1 HETATM 34 O O2D NAP . . . F 2 75.336 94.589 66.691 1 69.76 ? O2D NAP 601 B 1 HETATM 35 C C1D NAP . . . F 2 73.418 95.256 67.979 1 69.76 ? C1D NAP 601 B 1 HETATM 36 N N1N NAP . . . F 2 73.493 96.039 69.211 1 69.76 ? N1N NAP 601 B 1 HETATM 37 C C2N NAP . . . F 2 73.391 97.367 69.146 1 69.76 ? C2N NAP 601 B 1 HETATM 38 C C3N NAP . . . F 2 73.452 98.146 70.287 1 69.76 ? C3N NAP 601 B 1 HETATM 39 C C7N NAP . . . F 2 73.34 99.635 70.174 1 69.76 ? C7N NAP 601 B 1 HETATM 40 O O7N NAP . . . F 2 73.404 100.146 69.074 1 69.76 ? O7N NAP 601 B 1 HETATM 41 N N7N NAP . . . F 2 73.176 100.363 71.273 1 69.76 ? N7N NAP 601 B 1 HETATM 42 C C4N NAP . . . F 2 73.622 97.534 71.516 1 69.76 ? C4N NAP 601 B 1 HETATM 43 C C5N NAP . . . F 2 73.716 96.153 71.563 1 69.76 ? C5N NAP 601 B 1 HETATM 44 C C6N NAP . . . F 2 73.646 95.422 70.386 1 69.76 ? C6N NAP 601 B 1 HETATM 45 P P2B NAP . . . F 2 68.122 82.684 66.517 1 69.76 ? P2B NAP 601 B 1 HETATM 46 O O1X NAP . . . F 2 69.611 82.51 66.364 1 69.76 ? O1X NAP 601 B 1 HETATM 47 O O2X NAP . . . F 2 67.627 82.575 67.937 1 69.76 ? O2X NAP 601 B 1 HETATM 48 O O3X NAP . . . F 2 67.31 81.922 65.505 1 69.76 ? O3X NAP 601 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #