data_8E8O # _model_server_result.job_id Pi_fz6fm7Lf3CovrTKhpRw _model_server_result.datetime_utc '2024-10-19 16:33:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 8E8O # _exptl.entry_id 8E8O _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8E8O _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 235 n n PA O2A NAP sing 236 n n PA O5B NAP sing 237 n n PA O3 NAP sing 238 n n O2A HOA2 NAP sing 239 n n O5B C5B NAP sing 240 n n C5B C4B NAP sing 241 n n C5B H51A NAP sing 242 n n C5B H52A NAP sing 243 n n C4B O4B NAP sing 244 n n C4B C3B NAP sing 245 n n C4B H4B NAP sing 246 n n O4B C1B NAP sing 247 n n C3B O3B NAP sing 248 n n C3B C2B NAP sing 249 n n C3B H3B NAP sing 250 n n O3B HO3A NAP sing 251 n n C2B O2B NAP sing 252 n n C2B C1B NAP sing 253 n n C2B H2B NAP sing 254 n n O2B P2B NAP sing 255 n n C1B N9A NAP sing 256 n n C1B H1B NAP sing 257 n n N9A C8A NAP sing 258 n y N9A C4A NAP sing 259 n y C8A N7A NAP doub 260 n y C8A H8A NAP sing 261 n n N7A C5A NAP sing 262 n y C5A C6A NAP sing 263 n y C5A C4A NAP doub 264 n y C6A N6A NAP sing 265 n n C6A N1A NAP doub 266 n y N6A H61A NAP sing 267 n n N6A H62A NAP sing 268 n n N1A C2A NAP sing 269 n y C2A N3A NAP doub 270 n y C2A H2A NAP sing 271 n n N3A C4A NAP sing 272 n y O3 PN NAP sing 273 n n PN O1N NAP doub 274 n n PN O2N NAP sing 275 n n PN O5D NAP sing 276 n n O5D C5D NAP sing 277 n n C5D C4D NAP sing 278 n n C5D H51N NAP sing 279 n n C5D H52N NAP sing 280 n n C4D O4D NAP sing 281 n n C4D C3D NAP sing 282 n n C4D H4D NAP sing 283 n n O4D C1D NAP sing 284 n n C3D O3D NAP sing 285 n n C3D C2D NAP sing 286 n n C3D H3D NAP sing 287 n n O3D HO3N NAP sing 288 n n C2D O2D NAP sing 289 n n C2D C1D NAP sing 290 n n C2D H2D NAP sing 291 n n O2D HO2N NAP sing 292 n n C1D N1N NAP sing 293 n n C1D H1D NAP sing 294 n n N1N C2N NAP sing 295 n y N1N C6N NAP doub 296 n y C2N C3N NAP doub 297 n y C2N H2N NAP sing 298 n n C3N C7N NAP sing 299 n n C3N C4N NAP sing 300 n y C7N O7N NAP doub 301 n n C7N N7N NAP sing 302 n n N7N H71N NAP sing 303 n n N7N H72N NAP sing 304 n n C4N C5N NAP doub 305 n y C4N H4N NAP sing 306 n n C5N C6N NAP sing 307 n y C5N H5N NAP sing 308 n n C6N H6N NAP sing 309 n n P2B O1X NAP doub 310 n n P2B O2X NAP sing 311 n n P2B O3X NAP sing 312 n n O2X HOP2 NAP sing 313 n n O3X HOP3 NAP sing 314 n n # _atom_sites.entry_id 8E8O _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 601 601 NAP NAP . F 2 NAP B 1 601 601 NAP NAP . G 2 NAP C 1 601 601 NAP NAP . H 2 NAP D 1 601 601 NAP NAP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . G 2 135.635 87.769 138.335 1 69.39 ? PA NAP 601 C 1 HETATM 2 O O1A NAP . . . G 2 135.353 86.85 137.177 1 69.39 ? O1A NAP 601 C 1 HETATM 3 O O2A NAP . . . G 2 134.555 88.109 139.328 1 69.39 ? O2A NAP 601 C 1 HETATM 4 O O5B NAP . . . G 2 136.91 87.225 139.134 1 69.39 ? O5B NAP 601 C 1 HETATM 5 C C5B NAP . . . G 2 137.1 87.61 140.492 1 69.39 ? C5B NAP 601 C 1 HETATM 6 C C4B NAP . . . G 2 138.482 87.145 140.91 1 69.39 ? C4B NAP 601 C 1 HETATM 7 O O4B NAP . . . G 2 138.709 87.418 142.29 1 69.39 ? O4B NAP 601 C 1 HETATM 8 C C3B NAP . . . G 2 138.588 85.644 140.727 1 69.39 ? C3B NAP 601 C 1 HETATM 9 O O3B NAP . . . G 2 139.586 85.342 139.75 1 69.39 ? O3B NAP 601 C 1 HETATM 10 C C2B NAP . . . G 2 139.005 85.084 142.066 1 69.39 ? C2B NAP 601 C 1 HETATM 11 O O2B NAP . . . G 2 140.12 84.231 141.849 1 69.39 ? O2B NAP 601 C 1 HETATM 12 C C1B NAP . . . G 2 139.366 86.306 142.893 1 69.39 ? C1B NAP 601 C 1 HETATM 13 N N9A NAP . . . G 2 138.901 86.127 144.287 1 69.39 ? N9A NAP 601 C 1 HETATM 14 C C8A NAP . . . G 2 137.722 85.607 144.665 1 69.39 ? C8A NAP 601 C 1 HETATM 15 N N7A NAP . . . G 2 137.618 85.57 146.016 1 69.39 ? N7A NAP 601 C 1 HETATM 16 C C5A NAP . . . G 2 138.755 86.077 146.519 1 69.39 ? C5A NAP 601 C 1 HETATM 17 C C6A NAP . . . G 2 139.303 86.332 147.868 1 69.39 ? C6A NAP 601 C 1 HETATM 18 N N6A NAP . . . G 2 138.591 86.027 148.977 1 69.39 ? N6A NAP 601 C 1 HETATM 19 N N1A NAP . . . G 2 140.533 86.877 147.956 1 69.39 ? N1A NAP 601 C 1 HETATM 20 C C2A NAP . . . G 2 141.248 87.183 146.861 1 69.39 ? C2A NAP 601 C 1 HETATM 21 N N3A NAP . . . G 2 140.814 86.978 145.608 1 69.39 ? N3A NAP 601 C 1 HETATM 22 C C4A NAP . . . G 2 139.599 86.436 145.376 1 69.39 ? C4A NAP 601 C 1 HETATM 23 O O3 NAP . . . G 2 136.236 89.127 137.746 1 69.39 ? O3 NAP 601 C 1 HETATM 24 P PN NAP . . . G 2 135.273 90.378 137.499 1 69.39 ? PN NAP 601 C 1 HETATM 25 O O1N NAP . . . G 2 133.869 89.88 137.282 1 69.39 ? O1N NAP 601 C 1 HETATM 26 O O2N NAP . . . G 2 135.91 91.298 136.496 1 69.39 ? O2N NAP 601 C 1 HETATM 27 O O5D NAP . . . G 2 135.374 91.069 138.938 1 69.39 ? O5D NAP 601 C 1 HETATM 28 C C5D NAP . . . G 2 136.073 92.294 139.07 1 69.39 ? C5D NAP 601 C 1 HETATM 29 C C4D NAP . . . G 2 135.466 93.083 140.212 1 69.39 ? C4D NAP 601 C 1 HETATM 30 O O4D NAP . . . G 2 135.762 94.459 140.002 1 69.39 ? O4D NAP 601 C 1 HETATM 31 C C3D NAP . . . G 2 133.961 92.928 140.208 1 69.39 ? C3D NAP 601 C 1 HETATM 32 O O3D NAP . . . G 2 133.543 92.327 141.431 1 69.39 ? O3D NAP 601 C 1 HETATM 33 C C2D NAP . . . G 2 133.391 94.322 140.112 1 69.39 ? C2D NAP 601 C 1 HETATM 34 O O2D NAP . . . G 2 132.664 94.589 141.309 1 69.39 ? O2D NAP 601 C 1 HETATM 35 C C1D NAP . . . G 2 134.582 95.256 140.021 1 69.39 ? C1D NAP 601 C 1 HETATM 36 N N1N NAP . . . G 2 134.507 96.039 138.789 1 69.39 ? N1N NAP 601 C 1 HETATM 37 C C2N NAP . . . G 2 134.609 97.367 138.854 1 69.39 ? C2N NAP 601 C 1 HETATM 38 C C3N NAP . . . G 2 134.548 98.146 137.713 1 69.39 ? C3N NAP 601 C 1 HETATM 39 C C7N NAP . . . G 2 134.66 99.635 137.826 1 69.39 ? C7N NAP 601 C 1 HETATM 40 O O7N NAP . . . G 2 134.596 100.146 138.926 1 69.39 ? O7N NAP 601 C 1 HETATM 41 N N7N NAP . . . G 2 134.824 100.363 136.727 1 69.39 ? N7N NAP 601 C 1 HETATM 42 C C4N NAP . . . G 2 134.378 97.534 136.484 1 69.39 ? C4N NAP 601 C 1 HETATM 43 C C5N NAP . . . G 2 134.284 96.153 136.437 1 69.39 ? C5N NAP 601 C 1 HETATM 44 C C6N NAP . . . G 2 134.354 95.422 137.614 1 69.39 ? C6N NAP 601 C 1 HETATM 45 P P2B NAP . . . G 2 139.878 82.684 141.483 1 69.39 ? P2B NAP 601 C 1 HETATM 46 O O1X NAP . . . G 2 138.389 82.51 141.636 1 69.39 ? O1X NAP 601 C 1 HETATM 47 O O2X NAP . . . G 2 140.373 82.575 140.063 1 69.39 ? O2X NAP 601 C 1 HETATM 48 O O3X NAP . . . G 2 140.69 81.922 142.495 1 69.39 ? O3X NAP 601 C 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #