data_8E8Q
#
_model_server_result.job_id            VtJPhxIERSCyUPNh9Z6R0Q 
_model_server_result.datetime_utc      '2024-10-19 10:23:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8e8q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":501}' 
#
_entry.id    8E8Q 
#
_exptl.entry_id    8E8Q 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8E8Q 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8E8Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 U N N 
? 3 V N N 
? 3 X N N 
? 3 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OG1 THR 90 B THR 126 1_555 W MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc2 V O2G ATP . B ATP 501 1_555 W MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc3 V O2B ATP . B ATP 501 1_555 W MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc4 C OG1 THR 90 C THR 126 1_555 Y MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc5 C OD2 ASP 148 C ASP 184 1_555 Y MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? 
metalc ? metalc6 X O2B ATP . C ATP 501 1_555 Y MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc7 D OG1 THR 90 D THR 126 1_555 AA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc8 Z O2G ATP . D ATP 501 1_555 AA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? 
metalc ? metalc9 Z O2B ATP . D ATP 501 1_555 AA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     8E8Q 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 3 ATP A 1 501 501 ATP ATP . 
V 3 ATP B 1 501 501 ATP ATP . 
W 4 MG B 1 502 502 MG MG . 
X 3 ATP C 1 501 501 ATP ATP . 
Y 4 MG C 1 502 502 MG MG . 
Z 3 ATP D 1 501 501 ATP ATP . 
AA 4 MG D 1 502 502 MG MG . 
BA 5 ADP E 1 601 601 ADP ADP . 
CA 5 ADP F 1 600 600 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . U 3 171.362 143.961 191.07 1 125.95 ? PG ATP 501 A 1 
HETATM 2 O O1G ATP . . . U 3 170.848 144.566 192.353 1 125.95 ? O1G ATP 501 A 1 
HETATM 3 O O2G ATP . . . U 3 171.042 142.496 190.935 1 125.95 ? O2G ATP 501 A 1 
HETATM 4 O O3G ATP . . . U 3 170.968 144.758 189.853 1 125.95 ? O3G ATP 501 A 1 
HETATM 5 P PB ATP . . . U 3 173.955 145.28 190.892 1 125.95 ? PB ATP 501 A 1 
HETATM 6 O O1B ATP . . . U 3 173.961 145.562 189.428 1 125.95 ? O1B ATP 501 A 1 
HETATM 7 O O2B ATP . . . U 3 173.596 146.357 191.86 1 125.95 ? O2B ATP 501 A 1 
HETATM 8 O O3B ATP . . . U 3 172.967 144.049 191.148 1 125.95 ? O3B ATP 501 A 1 
HETATM 9 P PA ATP . . . U 3 176.088 144.751 192.751 1 125.95 ? PA ATP 501 A 1 
HETATM 10 O O1A ATP . . . U 3 175.21 144.111 193.773 1 125.95 ? O1A ATP 501 A 1 
HETATM 11 O O2A ATP . . . U 3 176.502 146.167 192.98 1 125.95 ? O2A ATP 501 A 1 
HETATM 12 O O3A ATP . . . U 3 175.37 144.673 191.323 1 125.95 ? O3A ATP 501 A 1 
HETATM 13 O O5' ATP . . . U 3 177.397 143.851 192.534 1 125.95 ? O5' ATP 501 A 1 
HETATM 14 C C5' ATP . . . U 3 177.323 142.425 192.783 1 125.95 ? C5' ATP 501 A 1 
HETATM 15 C C4' ATP . . . U 3 178.717 141.851 192.85 1 125.95 ? C4' ATP 501 A 1 
HETATM 16 O O4' ATP . . . U 3 179.267 141.714 191.514 1 125.95 ? O4' ATP 501 A 1 
HETATM 17 C C3' ATP . . . U 3 179.763 142.675 193.611 1 125.95 ? C3' ATP 501 A 1 
HETATM 18 O O3' ATP . . . U 3 179.698 142.468 195.017 1 125.95 ? O3' ATP 501 A 1 
HETATM 19 C C2' ATP . . . U 3 181.044 142.14 192.973 1 125.95 ? C2' ATP 501 A 1 
HETATM 20 O O2' ATP . . . U 3 181.347 140.83 193.395 1 125.95 ? O2' ATP 501 A 1 
HETATM 21 C C1' ATP . . . U 3 180.613 142.137 191.51 1 125.95 ? C1' ATP 501 A 1 
HETATM 22 N N9 ATP . . . U 3 180.671 143.426 190.833 1 125.95 ? N9 ATP 501 A 1 
HETATM 23 C C8 ATP . . . U 3 179.639 144.067 190.194 1 125.95 ? C8 ATP 501 A 1 
HETATM 24 N N7 ATP . . . U 3 180.006 145.215 189.672 1 125.95 ? N7 ATP 501 A 1 
HETATM 25 C C5 ATP . . . U 3 181.355 145.326 189.982 1 125.95 ? C5 ATP 501 A 1 
HETATM 26 C C6 ATP . . . U 3 182.316 146.317 189.706 1 125.95 ? C6 ATP 501 A 1 
HETATM 27 N N6 ATP . . . U 3 182.051 147.429 189.028 1 125.95 ? N6 ATP 501 A 1 
HETATM 28 N N1 ATP . . . U 3 183.573 146.11 190.164 1 125.95 ? N1 ATP 501 A 1 
HETATM 29 C C2 ATP . . . U 3 183.831 144.987 190.846 1 125.95 ? C2 ATP 501 A 1 
HETATM 30 N N3 ATP . . . U 3 183.01 143.988 191.163 1 125.95 ? N3 ATP 501 A 1 
HETATM 31 C C4 ATP . . . U 3 181.774 144.225 190.696 1 125.95 ? C4 ATP 501 A 1 
HETATM 32 H "H5'1" ATP . . . U 3 176.818 141.984 192.057 1 125.95 ? "H5'1" ATP 501 A 1 
HETATM 33 H "H5'2" ATP . . . U 3 176.856 142.256 193.636 1 125.95 ? "H5'2" ATP 501 A 1 
HETATM 34 H H4' ATP . . . U 3 178.66 140.962 193.259 1 125.95 ? H4' ATP 501 A 1 
HETATM 35 H H3' ATP . . . U 3 179.664 143.639 193.407 1 125.95 ? H3' ATP 501 A 1 
HETATM 36 H HO3' ATP . . . U 3 180.296 142.94 195.393 1 125.95 ? HO3' ATP 501 A 1 
HETATM 37 H H2' ATP . . . U 3 181.803 142.758 193.129 1 125.95 ? H2' ATP 501 A 1 
HETATM 38 H HO2' ATP . . . U 3 181.437 140.821 194.237 1 125.95 ? HO2' ATP 501 A 1 
HETATM 39 H H1' ATP . . . U 3 181.164 141.49 191.02 1 125.95 ? H1' ATP 501 A 1 
HETATM 40 H H8 ATP . . . U 3 178.761 143.735 190.136 1 125.95 ? H8 ATP 501 A 1 
HETATM 41 H HN61 ATP . . . U 3 181.236 147.579 188.742 1 125.95 ? HN61 ATP 501 A 1 
HETATM 42 H HN62 ATP . . . U 3 182.693 148.003 188.868 1 125.95 ? HN62 ATP 501 A 1 
HETATM 43 H H2 ATP . . . U 3 184.722 144.889 191.144 1 125.95 ? H2 ATP 501 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    154 
_model_server_stats.query_time_ms           501 
_model_server_stats.encode_time_ms          39 
_model_server_stats.element_count           43 
#