data_8E8Q
#
_model_server_result.job_id            sKJ_fl--Deli7e-pL3ZkpQ 
_model_server_result.datetime_utc      '2024-10-19 10:17:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8e8q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":600}' 
#
_entry.id    8E8Q 
#
_exptl.entry_id    8E8Q 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8E8Q 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8E8Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 BA N N 
? 5 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OG1 THR 90 B THR 126 1_555 W MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc2 V O2G ATP . B ATP 501 1_555 W MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc3 V O2B ATP . B ATP 501 1_555 W MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc4 C OG1 THR 90 C THR 126 1_555 Y MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc5 C OD2 ASP 148 C ASP 184 1_555 Y MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? 
metalc ? metalc6 X O2B ATP . C ATP 501 1_555 Y MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc7 D OG1 THR 90 D THR 126 1_555 AA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc8 Z O2G ATP . D ATP 501 1_555 AA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? 
metalc ? metalc9 Z O2B ATP . D ATP 501 1_555 AA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8E8Q 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 3 ATP A 1 501 501 ATP ATP . 
V 3 ATP B 1 501 501 ATP ATP . 
W 4 MG B 1 502 502 MG MG . 
X 3 ATP C 1 501 501 ATP ATP . 
Y 4 MG C 1 502 502 MG MG . 
Z 3 ATP D 1 501 501 ATP ATP . 
AA 4 MG D 1 502 502 MG MG . 
BA 5 ADP E 1 601 601 ADP ADP . 
CA 5 ADP F 1 600 600 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . CA 5 156.314 170.605 179.912 1 149.42 ? PB ADP 600 F 1 
HETATM 2 O O1B ADP . . . CA 5 155.327 170.908 178.813 1 149.42 ? O1B ADP 600 F 1 
HETATM 3 O O2B ADP . . . CA 5 157.681 170.245 179.387 1 149.42 ? O2B ADP 600 F 1 
HETATM 4 O O3B ADP . . . CA 5 155.787 169.598 180.905 1 149.42 ? O3B ADP 600 F 1 
HETATM 5 P PA ADP . . . CA 5 157.502 172.421 181.905 1 149.42 ? PA ADP 600 F 1 
HETATM 6 O O1A ADP . . . CA 5 157.189 173.833 182.275 1 149.42 ? O1A ADP 600 F 1 
HETATM 7 O O2A ADP . . . CA 5 157.462 171.381 182.974 1 149.42 ? O2A ADP 600 F 1 
HETATM 8 O O3A ADP . . . CA 5 156.501 171.981 180.732 1 149.42 ? O3A ADP 600 F 1 
HETATM 9 O O5' ADP . . . CA 5 158.917 172.355 181.151 1 149.42 ? O5' ADP 600 F 1 
HETATM 10 C C5' ADP . . . CA 5 159.726 173.55 180.996 1 149.42 ? C5' ADP 600 F 1 
HETATM 11 C C4' ADP . . . CA 5 160.518 173.807 182.255 1 149.42 ? C4' ADP 600 F 1 
HETATM 12 O O4' ADP . . . CA 5 161.687 174.607 181.933 1 149.42 ? O4' ADP 600 F 1 
HETATM 13 C C3' ADP . . . CA 5 159.81 174.588 183.369 1 149.42 ? C3' ADP 600 F 1 
HETATM 14 O O3' ADP . . . CA 5 159.022 173.749 184.204 1 149.42 ? O3' ADP 600 F 1 
HETATM 15 C C2' ADP . . . CA 5 161.007 175.209 184.09 1 149.42 ? C2' ADP 600 F 1 
HETATM 16 O O2' ADP . . . CA 5 161.708 174.27 184.875 1 149.42 ? O2' ADP 600 F 1 
HETATM 17 C C1' ADP . . . CA 5 161.837 175.637 182.885 1 149.42 ? C1' ADP 600 F 1 
HETATM 18 N N9 ADP . . . CA 5 161.417 176.896 182.282 1 149.42 ? N9 ADP 600 F 1 
HETATM 19 C C8 ADP . . . CA 5 160.588 177.057 181.2 1 149.42 ? C8 ADP 600 F 1 
HETATM 20 N N7 ADP . . . CA 5 160.386 178.309 180.879 1 149.42 ? N7 ADP 600 F 1 
HETATM 21 C C5 ADP . . . CA 5 161.127 179.023 181.808 1 149.42 ? C5 ADP 600 F 1 
HETATM 22 C C6 ADP . . . CA 5 161.323 180.403 182.001 1 149.42 ? C6 ADP 600 F 1 
HETATM 23 N N6 ADP . . . CA 5 160.767 181.339 181.238 1 149.42 ? N6 ADP 600 F 1 
HETATM 24 N N1 ADP . . . CA 5 162.126 180.783 183.023 1 149.42 ? N1 ADP 600 F 1 
HETATM 25 C C2 ADP . . . CA 5 162.68 179.834 183.788 1 149.42 ? C2 ADP 600 F 1 
HETATM 26 N N3 ADP . . . CA 5 162.567 178.512 183.701 1 149.42 ? N3 ADP 600 F 1 
HETATM 27 C C4 ADP . . . CA 5 161.768 178.164 182.679 1 149.42 ? C4 ADP 600 F 1 
HETATM 28 H "H5'1" ADP . . . CA 5 159.141 174.323 180.811 1 149.42 ? "H5'1" ADP 600 F 1 
HETATM 29 H "H5'2" ADP . . . CA 5 160.344 173.44 180.234 1 149.42 ? "H5'2" ADP 600 F 1 
HETATM 30 H H4' ADP . . . CA 5 160.815 172.942 182.609 1 149.42 ? H4' ADP 600 F 1 
HETATM 31 H H3' ADP . . . CA 5 159.244 175.298 182.974 1 149.42 ? H3' ADP 600 F 1 
HETATM 32 H HO3' ADP . . . CA 5 158.636 174.229 184.788 1 149.42 ? HO3' ADP 600 F 1 
HETATM 33 H H2' ADP . . . CA 5 160.73 175.995 184.631 1 149.42 ? H2' ADP 600 F 1 
HETATM 34 H HO2' ADP . . . CA 5 161.187 173.955 185.465 1 149.42 ? HO2' ADP 600 F 1 
HETATM 35 H H1' ADP . . . CA 5 162.78 175.702 183.156 1 149.42 ? H1' ADP 600 F 1 
HETATM 36 H H8 ADP . . . CA 5 160.206 176.337 180.732 1 149.42 ? H8 ADP 600 F 1 
HETATM 37 H HN61 ADP . . . CA 5 160.226 181.106 180.589 1 149.42 ? HN61 ADP 600 F 1 
HETATM 38 H HN62 ADP . . . CA 5 160.945 182.184 181.388 1 149.42 ? HN62 ADP 600 F 1 
HETATM 39 H H2 ADP . . . CA 5 163.231 180.148 184.489 1 149.42 ? H2 ADP 600 F 1 
#
_model_server_stats.io_time_ms              105 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    89 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           39 
#