data_8E9B # _model_server_result.job_id dHeTBE2E87McGWw8IEN_Gw _model_server_result.datetime_utc '2024-11-09 01:53:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":802}' # _entry.id 8E9B # _exptl.entry_id 8E9B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8E9B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 Q N N ? 10 U N N ? 10 W N N ? 10 Y N N ? 10 AA N N ? 10 CA N N ? 10 EA N N ? 10 GA N N ? 10 IA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 I SG CYS 217 N CYS 217 1_555 I SG CYS 257 N CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? covale ? covale1 H C GLU 72 M GLU 72 1_555 H N HIC 73 M HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 H C HIC 73 M HIC 73 1_555 H N GLY 74 M GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 I C GLU 72 N GLU 72 1_555 I N HIC 73 N HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 I C HIC 73 N HIC 73 1_555 I N GLY 74 N GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 J C GLU 72 O GLU 72 1_555 J N HIC 73 O HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 J C HIC 73 O HIC 73 1_555 J N GLY 74 O GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 K C GLU 72 P GLU 72 1_555 K N HIC 73 P HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 K C HIC 73 P HIC 73 1_555 K N GLY 74 P GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 L C GLU 72 Q GLU 72 1_555 L N HIC 73 Q HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 L C HIC 73 Q HIC 73 1_555 L N GLY 74 Q GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 M C GLU 72 R GLU 72 1_555 M N HIC 73 R HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 M C HIC 73 R HIC 73 1_555 M N GLY 74 R GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 N C GLU 72 H GLU 72 1_555 N N HIC 73 H HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 N C HIC 73 H HIC 73 1_555 N N GLY 74 H GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 O C GLU 72 I GLU 72 1_555 O N HIC 73 I HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 O C HIC 73 I HIC 73 1_555 O N GLY 74 I GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 P MG MG . A MG 901 1_555 Q O1B ADP . A ADP 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc2 P MG MG . A MG 901 1_555 Q O3B ADP . A ADP 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc3 R MG MG . B MG 901 1_555 S O1G ATP . B ATP 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc4 R MG MG . B MG 901 1_555 S O2B ATP . B ATP 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc5 H OE1 GLN 137 M GLN 137 1_555 T MG MG . M MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc6 T MG MG . M MG 801 1_555 U O2B ADP . M ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc7 T MG MG . M MG 801 1_555 U O3B ADP . M ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc8 V MG MG . N MG 801 1_555 W O3B ADP . N ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc9 X MG MG . O MG 801 1_555 Y O3B ADP . O ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc10 Z MG MG . P MG 801 1_555 AA O3B ADP . P ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc11 BA MG MG . Q MG 801 1_555 CA O1B ADP . Q ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc12 BA MG MG . Q MG 801 1_555 CA O3B ADP . Q ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc13 DA MG MG . R MG 801 1_555 EA O1B ADP . R ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc14 DA MG MG . R MG 801 1_555 EA O3B ADP . R ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc15 FA MG MG . H MG 801 1_555 GA O3B ADP . H ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc16 O OE1 GLN 137 I GLN 137 1_555 HA MG MG . I MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc17 HA MG MG . I MG 801 1_555 IA O1B ADP . I ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8E9B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 9 MG A 1 901 901 MG MG . Q 10 ADP A 1 902 902 ADP ADP . R 9 MG B 1 901 901 MG MG . S 11 ATP B 1 902 902 ATP ATP . T 9 MG M 1 801 801 MG MG . U 10 ADP M 1 802 802 ADP ADP . V 9 MG N 1 801 801 MG MG . W 10 ADP N 1 802 802 ADP ADP . X 9 MG O 1 801 801 MG MG . Y 10 ADP O 1 802 802 ADP ADP . Z 9 MG P 1 801 801 MG MG . AA 10 ADP P 1 802 802 ADP ADP . BA 9 MG Q 1 801 801 MG MG . CA 10 ADP Q 1 802 802 ADP ADP . DA 9 MG R 1 801 801 MG MG . EA 10 ADP R 1 802 802 ADP ADP . FA 9 MG H 1 801 801 MG MG . GA 10 ADP H 1 802 802 ADP ADP . HA 9 MG I 1 801 801 MG MG . IA 10 ADP I 1 802 802 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . IA 10 243.457 307.787 211.224 1 109.48 ? PB ADP 802 I 1 HETATM 2 O O1B ADP . . . IA 10 243.657 309.08 210.474 1 109.48 ? O1B ADP 802 I 1 HETATM 3 O O2B ADP . . . IA 10 242.508 306.82 210.561 1 109.48 ? O2B ADP 802 I 1 HETATM 4 O O3B ADP . . . IA 10 243.256 307.946 212.71 1 109.48 ? O3B ADP 802 I 1 HETATM 5 P PA ADP . . . IA 10 245.206 305.831 212.093 1 109.48 ? PA ADP 802 I 1 HETATM 6 O O1A ADP . . . IA 10 243.947 305.013 212.217 1 109.48 ? O1A ADP 802 I 1 HETATM 7 O O2A ADP . . . IA 10 245.9 306.366 213.321 1 109.48 ? O2A ADP 802 I 1 HETATM 8 O O3A ADP . . . IA 10 244.882 307.06 211.116 1 109.48 ? O3A ADP 802 I 1 HETATM 9 O O5' ADP . . . IA 10 246.264 304.988 211.226 1 109.48 ? O5' ADP 802 I 1 HETATM 10 C C5' ADP . . . IA 10 246.375 303.577 211.399 1 109.48 ? C5' ADP 802 I 1 HETATM 11 C C4' ADP . . . IA 10 247.471 303.05 210.484 1 109.48 ? C4' ADP 802 I 1 HETATM 12 O O4' ADP . . . IA 10 248.732 303.147 211.145 1 109.48 ? O4' ADP 802 I 1 HETATM 13 C C3' ADP . . . IA 10 247.264 301.587 210.133 1 109.48 ? C3' ADP 802 I 1 HETATM 14 O O3' ADP . . . IA 10 246.877 301.464 208.762 1 109.48 ? O3' ADP 802 I 1 HETATM 15 C C2' ADP . . . IA 10 248.602 300.914 210.355 1 109.48 ? C2' ADP 802 I 1 HETATM 16 O O2' ADP . . . IA 10 249.109 300.412 209.116 1 109.48 ? O2' ADP 802 I 1 HETATM 17 C C1' ADP . . . IA 10 249.527 301.991 210.89 1 109.48 ? C1' ADP 802 I 1 HETATM 18 N N9 ADP . . . IA 10 250.134 301.521 212.155 1 109.48 ? N9 ADP 802 I 1 HETATM 19 C C8 ADP . . . IA 10 249.533 301.518 213.356 1 109.48 ? C8 ADP 802 I 1 HETATM 20 N N7 ADP . . . IA 10 250.356 301.02 214.313 1 109.48 ? N7 ADP 802 I 1 HETATM 21 C C5 ADP . . . IA 10 251.514 300.694 213.714 1 109.48 ? C5 ADP 802 I 1 HETATM 22 C C6 ADP . . . IA 10 252.808 300.117 214.142 1 109.48 ? C6 ADP 802 I 1 HETATM 23 N N6 ADP . . . IA 10 253.031 299.785 215.436 1 109.48 ? N6 ADP 802 I 1 HETATM 24 N N1 ADP . . . IA 10 253.757 299.938 213.198 1 109.48 ? N1 ADP 802 I 1 HETATM 25 C C2 ADP . . . IA 10 253.545 300.265 211.91 1 109.48 ? C2 ADP 802 I 1 HETATM 26 N N3 ADP . . . IA 10 252.396 300.791 211.452 1 109.48 ? N3 ADP 802 I 1 HETATM 27 C C4 ADP . . . IA 10 251.362 301.024 212.291 1 109.48 ? C4 ADP 802 I 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #