data_8E9E # _model_server_result.job_id ml5YAzfuHfMAhoBbmngnnw _model_server_result.datetime_utc '2024-11-07 02:35:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8E9E # _exptl.entry_id 8E9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8E9E _cell.length_a 169.898 _cell.length_b 169.898 _cell.length_c 69.339 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 297 B ASP 297 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc2 B OD2 ASP 297 B ASP 297 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc3 B SG CYS 299 B CYS 299 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc4 B NE2 HIS 362 B HIS 362 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc5 J ZN ZN . B ZN 502 1_555 K N15 XMY . B XMY 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 394 n n C C2 TRS sing 395 n n C C3 TRS sing 396 n n C N TRS sing 397 n n C1 O1 TRS sing 398 n n C1 H11 TRS sing 399 n n C1 H12 TRS sing 400 n n C2 O2 TRS sing 401 n n C2 H21 TRS sing 402 n n C2 H22 TRS sing 403 n n C3 O3 TRS sing 404 n n C3 H31 TRS sing 405 n n C3 H32 TRS sing 406 n n N HN1 TRS sing 407 n n N HN2 TRS sing 408 n n N HN3 TRS sing 409 n n O1 HO1 TRS sing 410 n n O2 HO2 TRS sing 411 n n O3 HO3 TRS sing 412 n n # _atom_sites.entry_id 8E9E _atom_sites.fract_transf_matrix[1][1] 0.005886 _atom_sites.fract_transf_matrix[1][2] 0.003398 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006796 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TRS A 1 401 2 TRS TRS . D 3 TRS A 1 402 3 TRS TRS . E 3 TRS A 1 403 4 TRS TRS . F 4 EDO A 1 404 4 EDO EDO . G 4 EDO A 1 405 5 EDO EDO . H 4 EDO A 1 406 6 EDO EDO . I 5 FPP B 1 501 501 FPP FPP . J 6 ZN B 1 502 601 ZN ZN . K 7 XMY B 1 503 701 XMY LIG . L 4 EDO B 1 504 801 EDO EDO . M 3 TRS B 1 505 1 TRS TRS . N 4 EDO B 1 506 1 EDO EDO . O 4 EDO B 1 507 2 EDO EDO . P 4 EDO B 1 508 3 EDO EDO . Q 4 EDO B 1 509 7 EDO EDO . R 4 EDO B 1 510 8 EDO EDO . S 8 HOH A 1 501 9 HOH HOH . S 8 HOH A 2 502 68 HOH HOH . S 8 HOH A 3 503 126 HOH HOH . S 8 HOH A 4 504 93 HOH HOH . S 8 HOH A 5 505 94 HOH HOH . S 8 HOH A 6 506 89 HOH HOH . S 8 HOH A 7 507 62 HOH HOH . S 8 HOH A 8 508 118 HOH HOH . S 8 HOH A 9 509 45 HOH HOH . S 8 HOH A 10 510 1 HOH HOH . S 8 HOH A 11 511 67 HOH HOH . S 8 HOH A 12 512 110 HOH HOH . S 8 HOH A 13 513 60 HOH HOH . S 8 HOH A 14 514 109 HOH HOH . S 8 HOH A 15 515 38 HOH HOH . S 8 HOH A 16 516 91 HOH HOH . S 8 HOH A 17 517 2 HOH HOH . S 8 HOH A 18 518 119 HOH HOH . S 8 HOH A 19 519 36 HOH HOH . S 8 HOH A 20 520 26 HOH HOH . S 8 HOH A 21 521 75 HOH HOH . S 8 HOH A 22 522 56 HOH HOH . S 8 HOH A 23 523 31 HOH HOH . S 8 HOH A 24 524 128 HOH HOH . S 8 HOH A 25 525 69 HOH HOH . S 8 HOH A 26 526 129 HOH HOH . S 8 HOH A 27 527 5 HOH HOH . S 8 HOH A 28 528 100 HOH HOH . S 8 HOH A 29 529 86 HOH HOH . S 8 HOH A 30 530 78 HOH HOH . S 8 HOH A 31 531 13 HOH HOH . S 8 HOH A 32 532 92 HOH HOH . S 8 HOH A 33 533 87 HOH HOH . S 8 HOH A 34 534 6 HOH HOH . S 8 HOH A 35 535 95 HOH HOH . S 8 HOH A 36 536 116 HOH HOH . S 8 HOH A 37 537 113 HOH HOH . S 8 HOH A 38 538 127 HOH HOH . S 8 HOH A 39 539 114 HOH HOH . S 8 HOH A 40 540 105 HOH HOH . S 8 HOH A 41 541 35 HOH HOH . S 8 HOH A 42 542 10 HOH HOH . S 8 HOH A 43 543 117 HOH HOH . S 8 HOH A 44 544 111 HOH HOH . S 8 HOH A 45 545 107 HOH HOH . S 8 HOH A 46 546 15 HOH HOH . S 8 HOH A 47 547 11 HOH HOH . S 8 HOH A 48 548 63 HOH HOH . S 8 HOH A 49 549 76 HOH HOH . S 8 HOH A 50 550 40 HOH HOH . S 8 HOH A 51 551 39 HOH HOH . S 8 HOH A 52 552 37 HOH HOH . S 8 HOH A 53 553 125 HOH HOH . S 8 HOH A 54 554 104 HOH HOH . S 8 HOH A 55 555 33 HOH HOH . S 8 HOH A 56 556 55 HOH HOH . S 8 HOH A 57 557 18 HOH HOH . S 8 HOH A 58 558 98 HOH HOH . S 8 HOH A 59 559 57 HOH HOH . S 8 HOH A 60 560 47 HOH HOH . S 8 HOH A 61 561 123 HOH HOH . S 8 HOH A 62 562 44 HOH HOH . S 8 HOH A 63 563 81 HOH HOH . S 8 HOH A 64 564 73 HOH HOH . S 8 HOH A 65 565 65 HOH HOH . S 8 HOH A 66 566 115 HOH HOH . T 8 HOH B 1 601 28 HOH HOH . T 8 HOH B 2 602 97 HOH HOH . T 8 HOH B 3 603 99 HOH HOH . T 8 HOH B 4 604 14 HOH HOH . T 8 HOH B 5 605 23 HOH HOH . T 8 HOH B 6 606 27 HOH HOH . T 8 HOH B 7 607 64 HOH HOH . T 8 HOH B 8 608 74 HOH HOH . T 8 HOH B 9 609 17 HOH HOH . T 8 HOH B 10 610 52 HOH HOH . T 8 HOH B 11 611 3 HOH HOH . T 8 HOH B 12 612 24 HOH HOH . T 8 HOH B 13 613 59 HOH HOH . T 8 HOH B 14 614 106 HOH HOH . T 8 HOH B 15 615 121 HOH HOH . T 8 HOH B 16 616 70 HOH HOH . T 8 HOH B 17 617 8 HOH HOH . T 8 HOH B 18 618 12 HOH HOH . T 8 HOH B 19 619 7 HOH HOH . T 8 HOH B 20 620 41 HOH HOH . T 8 HOH B 21 621 46 HOH HOH . T 8 HOH B 22 622 53 HOH HOH . T 8 HOH B 23 623 112 HOH HOH . T 8 HOH B 24 624 16 HOH HOH . T 8 HOH B 25 625 71 HOH HOH . T 8 HOH B 26 626 58 HOH HOH . T 8 HOH B 27 627 4 HOH HOH . T 8 HOH B 28 628 120 HOH HOH . T 8 HOH B 29 629 48 HOH HOH . T 8 HOH B 30 630 79 HOH HOH . T 8 HOH B 31 631 124 HOH HOH . T 8 HOH B 32 632 19 HOH HOH . T 8 HOH B 33 633 96 HOH HOH . T 8 HOH B 34 634 80 HOH HOH . T 8 HOH B 35 635 83 HOH HOH . T 8 HOH B 36 636 42 HOH HOH . T 8 HOH B 37 637 85 HOH HOH . T 8 HOH B 38 638 61 HOH HOH . T 8 HOH B 39 639 32 HOH HOH . T 8 HOH B 40 640 66 HOH HOH . T 8 HOH B 41 641 29 HOH HOH . T 8 HOH B 42 642 103 HOH HOH . T 8 HOH B 43 643 88 HOH HOH . T 8 HOH B 44 644 51 HOH HOH . T 8 HOH B 45 645 20 HOH HOH . T 8 HOH B 46 646 21 HOH HOH . T 8 HOH B 47 647 34 HOH HOH . T 8 HOH B 48 648 130 HOH HOH . T 8 HOH B 49 649 43 HOH HOH . T 8 HOH B 50 650 102 HOH HOH . T 8 HOH B 51 651 22 HOH HOH . T 8 HOH B 52 652 30 HOH HOH . T 8 HOH B 53 653 77 HOH HOH . T 8 HOH B 54 654 49 HOH HOH . T 8 HOH B 55 655 108 HOH HOH . T 8 HOH B 56 656 72 HOH HOH . T 8 HOH B 57 657 54 HOH HOH . T 8 HOH B 58 658 122 HOH HOH . T 8 HOH B 59 659 84 HOH HOH . T 8 HOH B 60 660 25 HOH HOH . T 8 HOH B 61 661 90 HOH HOH . T 8 HOH B 62 662 101 HOH HOH . T 8 HOH B 63 663 50 HOH HOH . T 8 HOH B 64 664 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 -12.295 54.77 -2.345 1 82.59 ? C TRS 401 A 1 HETATM 2 C C1 TRS . . . C 3 -13.353 54.572 -3.446 1 77.81 ? C1 TRS 401 A 1 HETATM 3 C C2 TRS . . . C 3 -10.888 54.51 -2.924 1 79.3 ? C2 TRS 401 A 1 HETATM 4 C C3 TRS . . . C 3 -12.52 53.81 -1.157 1 64.58 ? C3 TRS 401 A 1 HETATM 5 N N TRS . . . C 3 -12.393 56.182 -1.88 1 64.38 ? N TRS 401 A 1 HETATM 6 O O1 TRS . . . C 3 -13.673 53.202 -3.649 1 79.51 ? O1 TRS 401 A 1 HETATM 7 O O2 TRS . . . C 3 -10.704 53.174 -3.373 1 64.94 ? O2 TRS 401 A 1 HETATM 8 O O3 TRS . . . C 3 -13.691 54.112 -0.422 1 62.07 ? O3 TRS 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #