data_8E9E # _model_server_result.job_id fLj2-tSc3bcmNOvjt5bPaQ _model_server_result.datetime_utc '2024-11-07 02:35:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":503}' # _entry.id 8E9E # _exptl.entry_id 8E9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 565.425 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S)-4-({1-[(4-bromophenyl)methyl]-1H-imidazol-5-yl}methyl)-5-butyl-1-[3-(trifluoromethoxy)phenyl]piperazin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8E9E _cell.length_a 169.898 _cell.length_b 169.898 _cell.length_c 69.339 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 297 B ASP 297 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc2 B OD2 ASP 297 B ASP 297 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc3 B SG CYS 299 B CYS 299 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc4 B NE2 HIS 362 B HIS 362 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc5 J ZN ZN . B ZN 502 1_555 K N15 XMY . B XMY 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C26 H28 Br F3 N4 O2' _chem_comp.formula_weight 565.425 _chem_comp.id XMY _chem_comp.mon_nstd_flag . _chem_comp.name (5S)-4-({1-[(4-bromophenyl)methyl]-1H-imidazol-5-yl}methyl)-5-butyl-1-[3-(trifluoromethoxy)phenyl]piperazin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N15 C14 XMY sing 455 n y N15 C16 XMY doub 456 n y C14 C13 XMY doub 457 n y C16 N17 XMY sing 458 n y C01 C02 XMY sing 459 n n C03 C02 XMY sing 460 n n C03 C04 XMY sing 461 n n C13 N17 XMY sing 462 n y C13 C12 XMY sing 463 n n N17 C18 XMY sing 464 n n C04 C05 XMY sing 465 n n C05 C06 XMY sing 466 n n C05 N11 XMY sing 467 n n F36 C33 XMY sing 468 n n C12 N11 XMY sing 469 n n C06 N07 XMY sing 470 n n C18 C19 XMY sing 471 n n N11 C10 XMY sing 472 n n C25 C19 XMY doub 473 n y C25 C24 XMY sing 474 n y F35 C33 XMY sing 475 n n C33 F34 XMY sing 476 n n C33 O32 XMY sing 477 n n C19 C20 XMY sing 478 n y C24 C22 XMY doub 479 n y N07 C26 XMY sing 480 n n N07 C08 XMY sing 481 n n C10 C08 XMY sing 482 n n C27 C26 XMY doub 483 n y C27 C28 XMY sing 484 n y O32 C28 XMY sing 485 n n C26 C31 XMY sing 486 n y C28 C29 XMY doub 487 n y C08 O09 XMY doub 488 n n C20 C21 XMY doub 489 n y C22 C21 XMY sing 490 n y C22 BR23 XMY sing 491 n n C31 C30 XMY doub 492 n y C29 C30 XMY sing 493 n y C10 H1 XMY sing 494 n n C10 H2 XMY sing 495 n n C20 H3 XMY sing 496 n n C21 H4 XMY sing 497 n n C24 H5 XMY sing 498 n n C01 H6 XMY sing 499 n n C01 H7 XMY sing 500 n n C01 H8 XMY sing 501 n n C02 H9 XMY sing 502 n n C02 H10 XMY sing 503 n n C03 H11 XMY sing 504 n n C03 H12 XMY sing 505 n n C04 H13 XMY sing 506 n n C04 H14 XMY sing 507 n n C05 H15 XMY sing 508 n n C06 H16 XMY sing 509 n n C06 H17 XMY sing 510 n n C12 H18 XMY sing 511 n n C12 H19 XMY sing 512 n n C14 H20 XMY sing 513 n n C16 H21 XMY sing 514 n n C18 H22 XMY sing 515 n n C18 H23 XMY sing 516 n n C25 H24 XMY sing 517 n n C27 H25 XMY sing 518 n n C29 H26 XMY sing 519 n n C30 H27 XMY sing 520 n n C31 H28 XMY sing 521 n n # _atom_sites.entry_id 8E9E _atom_sites.fract_transf_matrix[1][1] 0.005886 _atom_sites.fract_transf_matrix[1][2] 0.003398 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006796 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TRS A 1 401 2 TRS TRS . D 3 TRS A 1 402 3 TRS TRS . E 3 TRS A 1 403 4 TRS TRS . F 4 EDO A 1 404 4 EDO EDO . G 4 EDO A 1 405 5 EDO EDO . H 4 EDO A 1 406 6 EDO EDO . I 5 FPP B 1 501 501 FPP FPP . J 6 ZN B 1 502 601 ZN ZN . K 7 XMY B 1 503 701 XMY LIG . L 4 EDO B 1 504 801 EDO EDO . M 3 TRS B 1 505 1 TRS TRS . N 4 EDO B 1 506 1 EDO EDO . O 4 EDO B 1 507 2 EDO EDO . P 4 EDO B 1 508 3 EDO EDO . Q 4 EDO B 1 509 7 EDO EDO . R 4 EDO B 1 510 8 EDO EDO . S 8 HOH A 1 501 9 HOH HOH . S 8 HOH A 2 502 68 HOH HOH . S 8 HOH A 3 503 126 HOH HOH . S 8 HOH A 4 504 93 HOH HOH . S 8 HOH A 5 505 94 HOH HOH . S 8 HOH A 6 506 89 HOH HOH . S 8 HOH A 7 507 62 HOH HOH . S 8 HOH A 8 508 118 HOH HOH . S 8 HOH A 9 509 45 HOH HOH . S 8 HOH A 10 510 1 HOH HOH . S 8 HOH A 11 511 67 HOH HOH . S 8 HOH A 12 512 110 HOH HOH . S 8 HOH A 13 513 60 HOH HOH . S 8 HOH A 14 514 109 HOH HOH . S 8 HOH A 15 515 38 HOH HOH . S 8 HOH A 16 516 91 HOH HOH . S 8 HOH A 17 517 2 HOH HOH . S 8 HOH A 18 518 119 HOH HOH . S 8 HOH A 19 519 36 HOH HOH . S 8 HOH A 20 520 26 HOH HOH . S 8 HOH A 21 521 75 HOH HOH . S 8 HOH A 22 522 56 HOH HOH . S 8 HOH A 23 523 31 HOH HOH . S 8 HOH A 24 524 128 HOH HOH . S 8 HOH A 25 525 69 HOH HOH . S 8 HOH A 26 526 129 HOH HOH . S 8 HOH A 27 527 5 HOH HOH . S 8 HOH A 28 528 100 HOH HOH . S 8 HOH A 29 529 86 HOH HOH . S 8 HOH A 30 530 78 HOH HOH . S 8 HOH A 31 531 13 HOH HOH . S 8 HOH A 32 532 92 HOH HOH . S 8 HOH A 33 533 87 HOH HOH . S 8 HOH A 34 534 6 HOH HOH . S 8 HOH A 35 535 95 HOH HOH . S 8 HOH A 36 536 116 HOH HOH . S 8 HOH A 37 537 113 HOH HOH . S 8 HOH A 38 538 127 HOH HOH . S 8 HOH A 39 539 114 HOH HOH . S 8 HOH A 40 540 105 HOH HOH . S 8 HOH A 41 541 35 HOH HOH . S 8 HOH A 42 542 10 HOH HOH . S 8 HOH A 43 543 117 HOH HOH . S 8 HOH A 44 544 111 HOH HOH . S 8 HOH A 45 545 107 HOH HOH . S 8 HOH A 46 546 15 HOH HOH . S 8 HOH A 47 547 11 HOH HOH . S 8 HOH A 48 548 63 HOH HOH . S 8 HOH A 49 549 76 HOH HOH . S 8 HOH A 50 550 40 HOH HOH . S 8 HOH A 51 551 39 HOH HOH . S 8 HOH A 52 552 37 HOH HOH . S 8 HOH A 53 553 125 HOH HOH . S 8 HOH A 54 554 104 HOH HOH . S 8 HOH A 55 555 33 HOH HOH . S 8 HOH A 56 556 55 HOH HOH . S 8 HOH A 57 557 18 HOH HOH . S 8 HOH A 58 558 98 HOH HOH . S 8 HOH A 59 559 57 HOH HOH . S 8 HOH A 60 560 47 HOH HOH . S 8 HOH A 61 561 123 HOH HOH . S 8 HOH A 62 562 44 HOH HOH . S 8 HOH A 63 563 81 HOH HOH . S 8 HOH A 64 564 73 HOH HOH . S 8 HOH A 65 565 65 HOH HOH . S 8 HOH A 66 566 115 HOH HOH . T 8 HOH B 1 601 28 HOH HOH . T 8 HOH B 2 602 97 HOH HOH . T 8 HOH B 3 603 99 HOH HOH . T 8 HOH B 4 604 14 HOH HOH . T 8 HOH B 5 605 23 HOH HOH . T 8 HOH B 6 606 27 HOH HOH . T 8 HOH B 7 607 64 HOH HOH . T 8 HOH B 8 608 74 HOH HOH . T 8 HOH B 9 609 17 HOH HOH . T 8 HOH B 10 610 52 HOH HOH . T 8 HOH B 11 611 3 HOH HOH . T 8 HOH B 12 612 24 HOH HOH . T 8 HOH B 13 613 59 HOH HOH . T 8 HOH B 14 614 106 HOH HOH . T 8 HOH B 15 615 121 HOH HOH . T 8 HOH B 16 616 70 HOH HOH . T 8 HOH B 17 617 8 HOH HOH . T 8 HOH B 18 618 12 HOH HOH . T 8 HOH B 19 619 7 HOH HOH . T 8 HOH B 20 620 41 HOH HOH . T 8 HOH B 21 621 46 HOH HOH . T 8 HOH B 22 622 53 HOH HOH . T 8 HOH B 23 623 112 HOH HOH . T 8 HOH B 24 624 16 HOH HOH . T 8 HOH B 25 625 71 HOH HOH . T 8 HOH B 26 626 58 HOH HOH . T 8 HOH B 27 627 4 HOH HOH . T 8 HOH B 28 628 120 HOH HOH . T 8 HOH B 29 629 48 HOH HOH . T 8 HOH B 30 630 79 HOH HOH . T 8 HOH B 31 631 124 HOH HOH . T 8 HOH B 32 632 19 HOH HOH . T 8 HOH B 33 633 96 HOH HOH . T 8 HOH B 34 634 80 HOH HOH . T 8 HOH B 35 635 83 HOH HOH . T 8 HOH B 36 636 42 HOH HOH . T 8 HOH B 37 637 85 HOH HOH . T 8 HOH B 38 638 61 HOH HOH . T 8 HOH B 39 639 32 HOH HOH . T 8 HOH B 40 640 66 HOH HOH . T 8 HOH B 41 641 29 HOH HOH . T 8 HOH B 42 642 103 HOH HOH . T 8 HOH B 43 643 88 HOH HOH . T 8 HOH B 44 644 51 HOH HOH . T 8 HOH B 45 645 20 HOH HOH . T 8 HOH B 46 646 21 HOH HOH . T 8 HOH B 47 647 34 HOH HOH . T 8 HOH B 48 648 130 HOH HOH . T 8 HOH B 49 649 43 HOH HOH . T 8 HOH B 50 650 102 HOH HOH . T 8 HOH B 51 651 22 HOH HOH . T 8 HOH B 52 652 30 HOH HOH . T 8 HOH B 53 653 77 HOH HOH . T 8 HOH B 54 654 49 HOH HOH . T 8 HOH B 55 655 108 HOH HOH . T 8 HOH B 56 656 72 HOH HOH . T 8 HOH B 57 657 54 HOH HOH . T 8 HOH B 58 658 122 HOH HOH . T 8 HOH B 59 659 84 HOH HOH . T 8 HOH B 60 660 25 HOH HOH . T 8 HOH B 61 661 90 HOH HOH . T 8 HOH B 62 662 101 HOH HOH . T 8 HOH B 63 663 50 HOH HOH . T 8 HOH B 64 664 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 XMY . . . K 7 -17.375 67.66 -0.267 1 38.9 ? C10 XMY 503 B 1 HETATM 2 C C13 XMY . . . K 7 -15.564 66.916 -3.23 1 39.16 ? C13 XMY 503 B 1 HETATM 3 C C20 XMY . . . K 7 -13.622 68.073 0.481 1 40.71 ? C20 XMY 503 B 1 HETATM 4 C C21 XMY . . . K 7 -13.808 69.18 1.273 1 41.19 ? C21 XMY 503 B 1 HETATM 5 C C22 XMY . . . K 7 -14.117 70.366 0.704 1 43.22 ? C22 XMY 503 B 1 HETATM 6 C C24 XMY . . . K 7 -14.246 70.477 -0.684 1 41.18 ? C24 XMY 503 B 1 HETATM 7 C C26 XMY . . . K 7 -18.177 71.541 0.131 1 33.54 ? C26 XMY 503 B 1 HETATM 8 C C28 XMY . . . K 7 -17.556 73.86 0.324 1 37.44 ? C28 XMY 503 B 1 HETATM 9 C C01 XMY . . . K 7 -22.686 68.927 -3.998 1 32.42 ? C01 XMY 503 B 1 HETATM 10 C C02 XMY . . . K 7 -21.68 68.554 -2.881 1 35.92 ? C02 XMY 503 B 1 HETATM 11 C C03 XMY . . . K 7 -20.237 68.792 -3.271 1 34.06 ? C03 XMY 503 B 1 HETATM 12 C C04 XMY . . . K 7 -19.26 67.978 -2.359 1 41.35 ? C04 XMY 503 B 1 HETATM 13 C C05 XMY . . . K 7 -17.772 68.599 -2.33 1 39.63 ? C05 XMY 503 B 1 HETATM 14 C C06 XMY . . . K 7 -17.895 70.001 -1.86 1 34.95 ? C06 XMY 503 B 1 HETATM 15 C C08 XMY . . . K 7 -17.667 69.046 0.462 1 38.66 ? C08 XMY 503 B 1 HETATM 16 C C12 XMY . . . K 7 -16.643 66.696 -2.097 1 38.34 ? C12 XMY 503 B 1 HETATM 17 C C14 XMY . . . K 7 -15.804 67.083 -4.566 1 41.99 ? C14 XMY 503 B 1 HETATM 18 C C16 XMY . . . K 7 -13.653 67.206 -4.244 1 39.87 ? C16 XMY 503 B 1 HETATM 19 C C18 XMY . . . K 7 -13.527 66.871 -1.739 1 41.35 ? C18 XMY 503 B 1 HETATM 20 C C19 XMY . . . K 7 -13.743 68.158 -0.888 1 35.97 ? C19 XMY 503 B 1 HETATM 21 C C25 XMY . . . K 7 -14.054 69.366 -1.471 1 36.71 ? C25 XMY 503 B 1 HETATM 22 C C27 XMY . . . K 7 -17.284 72.611 -0.154 1 33.84 ? C27 XMY 503 B 1 HETATM 23 C C29 XMY . . . K 7 -18.685 74.089 1.086 1 36.57 ? C29 XMY 503 B 1 HETATM 24 C C30 XMY . . . K 7 -19.555 73.031 1.349 1 40.73 ? C30 XMY 503 B 1 HETATM 25 C C31 XMY . . . K 7 -19.283 71.762 0.857 1 38.71 ? C31 XMY 503 B 1 HETATM 26 C C33 XMY . . . K 7 -15.953 75.018 -1.114 1 39.27 ? C33 XMY 503 B 1 HETATM 27 F F34 XMY . . . K 7 -15.176 76.135 -1.106 1 37.67 ? F34 XMY 503 B 1 HETATM 28 F F35 XMY . . . K 7 -15.145 73.909 -1.211 1 43.35 ? F35 XMY 503 B 1 HETATM 29 F F36 XMY . . . K 7 -16.854 75.081 -2.13 1 42.99 ? F36 XMY 503 B 1 HETATM 30 N N07 XMY . . . K 7 -17.911 70.198 -0.405 1 36.68 ? N07 XMY 503 B 1 HETATM 31 N N11 XMY . . . K 7 -16.921 67.827 -1.54 1 38.42 ? N11 XMY 503 B 1 HETATM 32 N N15 XMY . . . K 7 -14.623 67.255 -5.178 1 40.87 ? N15 XMY 503 B 1 HETATM 33 N N17 XMY . . . K 7 -14.236 66.995 -3.049 1 40.09 ? N17 XMY 503 B 1 HETATM 34 O O09 XMY . . . K 7 -17.652 69.15 1.599 1 41.41 ? O09 XMY 503 B 1 HETATM 35 O O32 XMY . . . K 7 -16.677 74.987 0.104 1 39.1 ? O32 XMY 503 B 1 HETATM 36 BR BR23 XMY . . . K 7 -14.367 71.884 1.888 1 62.06 ? BR23 XMY 503 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 36 #