data_8E9E
#
_model_server_result.job_id            3CpZV0Vq_MUsnqMI8alrBg 
_model_server_result.datetime_utc      '2024-11-07 02:52:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8e9e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":505}' 
#
_entry.id    8E9E 
#
_exptl.entry_id    8E9E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8E9E 
_cell.length_a            169.898 
_cell.length_b            169.898 
_cell.length_c            69.339 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8E9E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD1 ASP 297 B ASP 297 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc2 B OD2 ASP 297 B ASP 297 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc3 B SG CYS 299 B CYS 299 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc4 B NE2 HIS 362 B HIS 362 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc5 J ZN ZN . B ZN 502 1_555 K N15 XMY . B XMY 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 394 n n 
C C2 TRS sing 395 n n 
C C3 TRS sing 396 n n 
C N TRS sing 397 n n 
C1 O1 TRS sing 398 n n 
C1 H11 TRS sing 399 n n 
C1 H12 TRS sing 400 n n 
C2 O2 TRS sing 401 n n 
C2 H21 TRS sing 402 n n 
C2 H22 TRS sing 403 n n 
C3 O3 TRS sing 404 n n 
C3 H31 TRS sing 405 n n 
C3 H32 TRS sing 406 n n 
N HN1 TRS sing 407 n n 
N HN2 TRS sing 408 n n 
N HN3 TRS sing 409 n n 
O1 HO1 TRS sing 410 n n 
O2 HO2 TRS sing 411 n n 
O3 HO3 TRS sing 412 n n 
#
_atom_sites.entry_id                     8E9E 
_atom_sites.fract_transf_matrix[1][1]    0.005886 
_atom_sites.fract_transf_matrix[1][2]    0.003398 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006796 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014422 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 TRS A 1 401 2 TRS TRS . 
D 3 TRS A 1 402 3 TRS TRS . 
E 3 TRS A 1 403 4 TRS TRS . 
F 4 EDO A 1 404 4 EDO EDO . 
G 4 EDO A 1 405 5 EDO EDO . 
H 4 EDO A 1 406 6 EDO EDO . 
I 5 FPP B 1 501 501 FPP FPP . 
J 6 ZN B 1 502 601 ZN ZN . 
K 7 XMY B 1 503 701 XMY LIG . 
L 4 EDO B 1 504 801 EDO EDO . 
M 3 TRS B 1 505 1 TRS TRS . 
N 4 EDO B 1 506 1 EDO EDO . 
O 4 EDO B 1 507 2 EDO EDO . 
P 4 EDO B 1 508 3 EDO EDO . 
Q 4 EDO B 1 509 7 EDO EDO . 
R 4 EDO B 1 510 8 EDO EDO . 
S 8 HOH A 1 501 9 HOH HOH . 
S 8 HOH A 2 502 68 HOH HOH . 
S 8 HOH A 3 503 126 HOH HOH . 
S 8 HOH A 4 504 93 HOH HOH . 
S 8 HOH A 5 505 94 HOH HOH . 
S 8 HOH A 6 506 89 HOH HOH . 
S 8 HOH A 7 507 62 HOH HOH . 
S 8 HOH A 8 508 118 HOH HOH . 
S 8 HOH A 9 509 45 HOH HOH . 
S 8 HOH A 10 510 1 HOH HOH . 
S 8 HOH A 11 511 67 HOH HOH . 
S 8 HOH A 12 512 110 HOH HOH . 
S 8 HOH A 13 513 60 HOH HOH . 
S 8 HOH A 14 514 109 HOH HOH . 
S 8 HOH A 15 515 38 HOH HOH . 
S 8 HOH A 16 516 91 HOH HOH . 
S 8 HOH A 17 517 2 HOH HOH . 
S 8 HOH A 18 518 119 HOH HOH . 
S 8 HOH A 19 519 36 HOH HOH . 
S 8 HOH A 20 520 26 HOH HOH . 
S 8 HOH A 21 521 75 HOH HOH . 
S 8 HOH A 22 522 56 HOH HOH . 
S 8 HOH A 23 523 31 HOH HOH . 
S 8 HOH A 24 524 128 HOH HOH . 
S 8 HOH A 25 525 69 HOH HOH . 
S 8 HOH A 26 526 129 HOH HOH . 
S 8 HOH A 27 527 5 HOH HOH . 
S 8 HOH A 28 528 100 HOH HOH . 
S 8 HOH A 29 529 86 HOH HOH . 
S 8 HOH A 30 530 78 HOH HOH . 
S 8 HOH A 31 531 13 HOH HOH . 
S 8 HOH A 32 532 92 HOH HOH . 
S 8 HOH A 33 533 87 HOH HOH . 
S 8 HOH A 34 534 6 HOH HOH . 
S 8 HOH A 35 535 95 HOH HOH . 
S 8 HOH A 36 536 116 HOH HOH . 
S 8 HOH A 37 537 113 HOH HOH . 
S 8 HOH A 38 538 127 HOH HOH . 
S 8 HOH A 39 539 114 HOH HOH . 
S 8 HOH A 40 540 105 HOH HOH . 
S 8 HOH A 41 541 35 HOH HOH . 
S 8 HOH A 42 542 10 HOH HOH . 
S 8 HOH A 43 543 117 HOH HOH . 
S 8 HOH A 44 544 111 HOH HOH . 
S 8 HOH A 45 545 107 HOH HOH . 
S 8 HOH A 46 546 15 HOH HOH . 
S 8 HOH A 47 547 11 HOH HOH . 
S 8 HOH A 48 548 63 HOH HOH . 
S 8 HOH A 49 549 76 HOH HOH . 
S 8 HOH A 50 550 40 HOH HOH . 
S 8 HOH A 51 551 39 HOH HOH . 
S 8 HOH A 52 552 37 HOH HOH . 
S 8 HOH A 53 553 125 HOH HOH . 
S 8 HOH A 54 554 104 HOH HOH . 
S 8 HOH A 55 555 33 HOH HOH . 
S 8 HOH A 56 556 55 HOH HOH . 
S 8 HOH A 57 557 18 HOH HOH . 
S 8 HOH A 58 558 98 HOH HOH . 
S 8 HOH A 59 559 57 HOH HOH . 
S 8 HOH A 60 560 47 HOH HOH . 
S 8 HOH A 61 561 123 HOH HOH . 
S 8 HOH A 62 562 44 HOH HOH . 
S 8 HOH A 63 563 81 HOH HOH . 
S 8 HOH A 64 564 73 HOH HOH . 
S 8 HOH A 65 565 65 HOH HOH . 
S 8 HOH A 66 566 115 HOH HOH . 
T 8 HOH B 1 601 28 HOH HOH . 
T 8 HOH B 2 602 97 HOH HOH . 
T 8 HOH B 3 603 99 HOH HOH . 
T 8 HOH B 4 604 14 HOH HOH . 
T 8 HOH B 5 605 23 HOH HOH . 
T 8 HOH B 6 606 27 HOH HOH . 
T 8 HOH B 7 607 64 HOH HOH . 
T 8 HOH B 8 608 74 HOH HOH . 
T 8 HOH B 9 609 17 HOH HOH . 
T 8 HOH B 10 610 52 HOH HOH . 
T 8 HOH B 11 611 3 HOH HOH . 
T 8 HOH B 12 612 24 HOH HOH . 
T 8 HOH B 13 613 59 HOH HOH . 
T 8 HOH B 14 614 106 HOH HOH . 
T 8 HOH B 15 615 121 HOH HOH . 
T 8 HOH B 16 616 70 HOH HOH . 
T 8 HOH B 17 617 8 HOH HOH . 
T 8 HOH B 18 618 12 HOH HOH . 
T 8 HOH B 19 619 7 HOH HOH . 
T 8 HOH B 20 620 41 HOH HOH . 
T 8 HOH B 21 621 46 HOH HOH . 
T 8 HOH B 22 622 53 HOH HOH . 
T 8 HOH B 23 623 112 HOH HOH . 
T 8 HOH B 24 624 16 HOH HOH . 
T 8 HOH B 25 625 71 HOH HOH . 
T 8 HOH B 26 626 58 HOH HOH . 
T 8 HOH B 27 627 4 HOH HOH . 
T 8 HOH B 28 628 120 HOH HOH . 
T 8 HOH B 29 629 48 HOH HOH . 
T 8 HOH B 30 630 79 HOH HOH . 
T 8 HOH B 31 631 124 HOH HOH . 
T 8 HOH B 32 632 19 HOH HOH . 
T 8 HOH B 33 633 96 HOH HOH . 
T 8 HOH B 34 634 80 HOH HOH . 
T 8 HOH B 35 635 83 HOH HOH . 
T 8 HOH B 36 636 42 HOH HOH . 
T 8 HOH B 37 637 85 HOH HOH . 
T 8 HOH B 38 638 61 HOH HOH . 
T 8 HOH B 39 639 32 HOH HOH . 
T 8 HOH B 40 640 66 HOH HOH . 
T 8 HOH B 41 641 29 HOH HOH . 
T 8 HOH B 42 642 103 HOH HOH . 
T 8 HOH B 43 643 88 HOH HOH . 
T 8 HOH B 44 644 51 HOH HOH . 
T 8 HOH B 45 645 20 HOH HOH . 
T 8 HOH B 46 646 21 HOH HOH . 
T 8 HOH B 47 647 34 HOH HOH . 
T 8 HOH B 48 648 130 HOH HOH . 
T 8 HOH B 49 649 43 HOH HOH . 
T 8 HOH B 50 650 102 HOH HOH . 
T 8 HOH B 51 651 22 HOH HOH . 
T 8 HOH B 52 652 30 HOH HOH . 
T 8 HOH B 53 653 77 HOH HOH . 
T 8 HOH B 54 654 49 HOH HOH . 
T 8 HOH B 55 655 108 HOH HOH . 
T 8 HOH B 56 656 72 HOH HOH . 
T 8 HOH B 57 657 54 HOH HOH . 
T 8 HOH B 58 658 122 HOH HOH . 
T 8 HOH B 59 659 84 HOH HOH . 
T 8 HOH B 60 660 25 HOH HOH . 
T 8 HOH B 61 661 90 HOH HOH . 
T 8 HOH B 62 662 101 HOH HOH . 
T 8 HOH B 63 663 50 HOH HOH . 
T 8 HOH B 64 664 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . M 3 9.383 74.548 3.468 1 62.21 ? C TRS 505 B 1 
HETATM 2 C C1 TRS . . . M 3 9.236 74.68 1.929 1 61.4 ? C1 TRS 505 B 1 
HETATM 3 C C2 TRS . . . M 3 10.805 74.951 3.895 1 65.37 ? C2 TRS 505 B 1 
HETATM 4 C C3 TRS . . . M 3 9.029 73.13 3.989 1 55.41 ? C3 TRS 505 B 1 
HETATM 5 N N TRS . . . M 3 8.442 75.549 4.003 1 44.24 ? N TRS 505 B 1 
HETATM 6 O O1 TRS . . . M 3 9.338 73.505 1.123 1 56.46 ? O1 TRS 505 B 1 
HETATM 7 O O2 TRS . . . M 3 11.221 76.152 3.268 1 58.35 ? O2 TRS 505 B 1 
HETATM 8 O O3 TRS . . . M 3 8.858 72.981 5.387 1 47.85 ? O3 TRS 505 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           8 
#