data_8E9L
#
_model_server_result.job_id            kyWvBWizOZySz1sfPwR7fg 
_model_server_result.datetime_utc      '2024-11-28 17:02:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8e9l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    8E9L 
#
_exptl.entry_id    8E9L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8E9L 
_cell.length_a            143.83 
_cell.length_b            143.83 
_cell.length_c            81.57 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8E9L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    'P 6c' 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 260 n y 
N1 C6 PLP sing 261 n y 
C2 C2A PLP sing 262 n n 
C2 C3 PLP sing 263 n y 
C2A H2A1 PLP sing 264 n n 
C2A H2A2 PLP sing 265 n n 
C2A H2A3 PLP sing 266 n n 
C3 O3 PLP sing 267 n n 
C3 C4 PLP doub 268 n y 
O3 HO3 PLP sing 269 n n 
C4 C4A PLP sing 270 n n 
C4 C5 PLP sing 271 n y 
C4A O4A PLP doub 272 n n 
C4A H4A PLP sing 273 n n 
C5 C6 PLP doub 274 n y 
C5 C5A PLP sing 275 n n 
C6 H6 PLP sing 276 n n 
C5A O4P PLP sing 277 n n 
C5A H5A1 PLP sing 278 n n 
C5A H5A2 PLP sing 279 n n 
O4P P PLP sing 280 n n 
P O1P PLP doub 281 n n 
P O2P PLP sing 282 n n 
P O3P PLP sing 283 n n 
O2P HOP2 PLP sing 284 n n 
O3P HOP3 PLP sing 285 n n 
#
_atom_sites.entry_id                     8E9L 
_atom_sites.fract_transf_matrix[1][1]    0.006953 
_atom_sites.fract_transf_matrix[1][2]    0.004014 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008028 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012259 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 401 500 PLP PLP . 
D 3 SO4 A 1 402 600 SO4 SO4 . 
E 2 PLP B 1 401 500 PLP PLP . 
F 3 SO4 B 1 402 600 SO4 SO4 . 
G 4 HOH A 1 501 176 HOH HOH . 
G 4 HOH A 2 502 156 HOH HOH . 
G 4 HOH A 3 503 160 HOH HOH . 
G 4 HOH A 4 504 17 HOH HOH . 
G 4 HOH A 5 505 159 HOH HOH . 
G 4 HOH A 6 506 35 HOH HOH . 
G 4 HOH A 7 507 79 HOH HOH . 
G 4 HOH A 8 508 46 HOH HOH . 
G 4 HOH A 9 509 85 HOH HOH . 
G 4 HOH A 10 510 12 HOH HOH . 
G 4 HOH A 11 511 11 HOH HOH . 
G 4 HOH A 12 512 39 HOH HOH . 
G 4 HOH A 13 513 67 HOH HOH . 
G 4 HOH A 14 514 153 HOH HOH . 
G 4 HOH A 15 515 115 HOH HOH . 
G 4 HOH A 16 516 15 HOH HOH . 
G 4 HOH A 17 517 8 HOH HOH . 
G 4 HOH A 18 518 34 HOH HOH . 
G 4 HOH A 19 519 72 HOH HOH . 
G 4 HOH A 20 520 13 HOH HOH . 
G 4 HOH A 21 521 116 HOH HOH . 
G 4 HOH A 22 522 161 HOH HOH . 
G 4 HOH A 23 523 45 HOH HOH . 
G 4 HOH A 24 524 6 HOH HOH . 
G 4 HOH A 25 525 16 HOH HOH . 
G 4 HOH A 26 526 73 HOH HOH . 
G 4 HOH A 27 527 38 HOH HOH . 
G 4 HOH A 28 528 49 HOH HOH . 
G 4 HOH A 29 529 80 HOH HOH . 
G 4 HOH A 30 530 32 HOH HOH . 
G 4 HOH A 31 531 19 HOH HOH . 
G 4 HOH A 32 532 170 HOH HOH . 
G 4 HOH A 33 533 3 HOH HOH . 
G 4 HOH A 34 534 40 HOH HOH . 
G 4 HOH A 35 535 61 HOH HOH . 
G 4 HOH A 36 536 31 HOH HOH . 
G 4 HOH A 37 537 148 HOH HOH . 
G 4 HOH A 38 538 108 HOH HOH . 
G 4 HOH A 39 539 75 HOH HOH . 
G 4 HOH A 40 540 89 HOH HOH . 
G 4 HOH A 41 541 59 HOH HOH . 
G 4 HOH A 42 542 50 HOH HOH . 
G 4 HOH A 43 543 60 HOH HOH . 
G 4 HOH A 44 544 103 HOH HOH . 
G 4 HOH A 45 545 119 HOH HOH . 
G 4 HOH A 46 546 102 HOH HOH . 
G 4 HOH A 47 547 41 HOH HOH . 
G 4 HOH A 48 548 117 HOH HOH . 
G 4 HOH A 49 549 121 HOH HOH . 
G 4 HOH A 50 550 143 HOH HOH . 
G 4 HOH A 51 551 84 HOH HOH . 
G 4 HOH A 52 552 71 HOH HOH . 
G 4 HOH A 53 553 24 HOH HOH . 
G 4 HOH A 54 554 29 HOH HOH . 
G 4 HOH A 55 555 36 HOH HOH . 
G 4 HOH A 56 556 86 HOH HOH . 
G 4 HOH A 57 557 154 HOH HOH . 
G 4 HOH A 58 558 52 HOH HOH . 
G 4 HOH A 59 559 64 HOH HOH . 
G 4 HOH A 60 560 137 HOH HOH . 
G 4 HOH A 61 561 37 HOH HOH . 
G 4 HOH A 62 562 26 HOH HOH . 
G 4 HOH A 63 563 5 HOH HOH . 
G 4 HOH A 64 564 112 HOH HOH . 
G 4 HOH A 65 565 82 HOH HOH . 
G 4 HOH A 66 566 141 HOH HOH . 
G 4 HOH A 67 567 171 HOH HOH . 
G 4 HOH A 68 568 97 HOH HOH . 
G 4 HOH A 69 569 98 HOH HOH . 
G 4 HOH A 70 570 7 HOH HOH . 
G 4 HOH A 71 571 111 HOH HOH . 
G 4 HOH A 72 572 93 HOH HOH . 
G 4 HOH A 73 573 56 HOH HOH . 
G 4 HOH A 74 574 66 HOH HOH . 
G 4 HOH A 75 575 125 HOH HOH . 
G 4 HOH A 76 576 51 HOH HOH . 
G 4 HOH A 77 577 127 HOH HOH . 
G 4 HOH A 78 578 179 HOH HOH . 
G 4 HOH A 79 579 174 HOH HOH . 
G 4 HOH A 80 580 113 HOH HOH . 
G 4 HOH A 81 581 122 HOH HOH . 
G 4 HOH A 82 582 69 HOH HOH . 
G 4 HOH A 83 583 4 HOH HOH . 
G 4 HOH A 84 584 70 HOH HOH . 
G 4 HOH A 85 585 138 HOH HOH . 
G 4 HOH A 86 586 95 HOH HOH . 
H 4 HOH B 1 501 140 HOH HOH . 
H 4 HOH B 2 502 62 HOH HOH . 
H 4 HOH B 3 503 131 HOH HOH . 
H 4 HOH B 4 504 157 HOH HOH . 
H 4 HOH B 5 505 44 HOH HOH . 
H 4 HOH B 6 506 178 HOH HOH . 
H 4 HOH B 7 507 20 HOH HOH . 
H 4 HOH B 8 508 166 HOH HOH . 
H 4 HOH B 9 509 74 HOH HOH . 
H 4 HOH B 10 510 53 HOH HOH . 
H 4 HOH B 11 511 28 HOH HOH . 
H 4 HOH B 12 512 180 HOH HOH . 
H 4 HOH B 13 513 42 HOH HOH . 
H 4 HOH B 14 514 63 HOH HOH . 
H 4 HOH B 15 515 76 HOH HOH . 
H 4 HOH B 16 516 25 HOH HOH . 
H 4 HOH B 17 517 21 HOH HOH . 
H 4 HOH B 18 518 164 HOH HOH . 
H 4 HOH B 19 519 87 HOH HOH . 
H 4 HOH B 20 520 68 HOH HOH . 
H 4 HOH B 21 521 104 HOH HOH . 
H 4 HOH B 22 522 172 HOH HOH . 
H 4 HOH B 23 523 177 HOH HOH . 
H 4 HOH B 24 524 23 HOH HOH . 
H 4 HOH B 25 525 136 HOH HOH . 
H 4 HOH B 26 526 162 HOH HOH . 
H 4 HOH B 27 527 109 HOH HOH . 
H 4 HOH B 28 528 173 HOH HOH . 
H 4 HOH B 29 529 27 HOH HOH . 
H 4 HOH B 30 530 163 HOH HOH . 
H 4 HOH B 31 531 167 HOH HOH . 
H 4 HOH B 32 532 14 HOH HOH . 
H 4 HOH B 33 533 55 HOH HOH . 
H 4 HOH B 34 534 134 HOH HOH . 
H 4 HOH B 35 535 43 HOH HOH . 
H 4 HOH B 36 536 165 HOH HOH . 
H 4 HOH B 37 537 158 HOH HOH . 
H 4 HOH B 38 538 57 HOH HOH . 
H 4 HOH B 39 539 9 HOH HOH . 
H 4 HOH B 40 540 22 HOH HOH . 
H 4 HOH B 41 541 1 HOH HOH . 
H 4 HOH B 42 542 33 HOH HOH . 
H 4 HOH B 43 543 100 HOH HOH . 
H 4 HOH B 44 544 91 HOH HOH . 
H 4 HOH B 45 545 30 HOH HOH . 
H 4 HOH B 46 546 106 HOH HOH . 
H 4 HOH B 47 547 10 HOH HOH . 
H 4 HOH B 48 548 146 HOH HOH . 
H 4 HOH B 49 549 47 HOH HOH . 
H 4 HOH B 50 550 54 HOH HOH . 
H 4 HOH B 51 551 2 HOH HOH . 
H 4 HOH B 52 552 88 HOH HOH . 
H 4 HOH B 53 553 92 HOH HOH . 
H 4 HOH B 54 554 150 HOH HOH . 
H 4 HOH B 55 555 107 HOH HOH . 
H 4 HOH B 56 556 168 HOH HOH . 
H 4 HOH B 57 557 130 HOH HOH . 
H 4 HOH B 58 558 101 HOH HOH . 
H 4 HOH B 59 559 58 HOH HOH . 
H 4 HOH B 60 560 169 HOH HOH . 
H 4 HOH B 61 561 110 HOH HOH . 
H 4 HOH B 62 562 83 HOH HOH . 
H 4 HOH B 63 563 181 HOH HOH . 
H 4 HOH B 64 564 48 HOH HOH . 
H 4 HOH B 65 565 81 HOH HOH . 
H 4 HOH B 66 566 120 HOH HOH . 
H 4 HOH B 67 567 175 HOH HOH . 
H 4 HOH B 68 568 155 HOH HOH . 
H 4 HOH B 69 569 114 HOH HOH . 
H 4 HOH B 70 570 123 HOH HOH . 
H 4 HOH B 71 571 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . E 2 33.365 16.527 10.743 1 47.8 ? N1 PLP 401 B 1 
HETATM 2 C C2 PLP . . . E 2 32.572 17.498 11.317 1 48.32 ? C2 PLP 401 B 1 
HETATM 3 C C2A PLP . . . E 2 31.092 17.28 11.421 1 48.67 ? C2A PLP 401 B 1 
HETATM 4 C C3 PLP . . . E 2 33.146 18.667 11.804 1 47.57 ? C3 PLP 401 B 1 
HETATM 5 O O3 PLP . . . E 2 32.343 19.625 12.369 1 47.16 ? O3 PLP 401 B 1 
HETATM 6 C C4 PLP . . . E 2 34.523 18.866 11.708 1 47.05 ? C4 PLP 401 B 1 
HETATM 7 C C4A PLP . . . E 2 35.131 20.018 12.47 1 48.4 ? C4A PLP 401 B 1 
HETATM 8 O O4A PLP . . . E 2 36.184 20.531 12.098 1 49.69 ? O4A PLP 401 B 1 
HETATM 9 C C5 PLP . . . E 2 35.313 17.875 11.119 1 45.22 ? C5 PLP 401 B 1 
HETATM 10 C C6 PLP . . . E 2 34.726 16.715 10.644 1 46.51 ? C6 PLP 401 B 1 
HETATM 11 C C5A PLP . . . E 2 36.812 18.021 10.969 1 42.74 ? C5A PLP 401 B 1 
HETATM 12 O O4P PLP . . . E 2 37.502 17.724 12.159 1 39.02 ? O4P PLP 401 B 1 
HETATM 13 P P PLP . . . E 2 39.11 17.84 12.187 1 35.2 ? P PLP 401 B 1 
HETATM 14 O O1P PLP . . . E 2 39.677 17.524 10.833 1 36.04 ? O1P PLP 401 B 1 
HETATM 15 O O2P PLP . . . E 2 39.616 16.829 13.188 1 35.77 ? O2P PLP 401 B 1 
HETATM 16 O O3P PLP . . . E 2 39.519 19.223 12.6 1 34.39 ? O3P PLP 401 B 1 
HETATM 17 H H2A1 PLP . . . E 2 30.63 18.147 11.894 1 58.13 ? H2A1 PLP 401 B 1 
HETATM 18 H H2A2 PLP . . . E 2 30.897 16.391 12.021 1 58.13 ? H2A2 PLP 401 B 1 
HETATM 19 H H2A3 PLP . . . E 2 30.674 17.145 10.424 1 58.13 ? H2A3 PLP 401 B 1 
HETATM 20 H HO3 PLP . . . E 2 32.796 20.493 12.334 1 56.32 ? HO3 PLP 401 B 1 
HETATM 21 H H4A PLP . . . E 2 34.628 20.363 13.371 1 57.8 ? H4A PLP 401 B 1 
HETATM 22 H H6 PLP . . . E 2 35.346 15.943 10.188 1 55.54 ? H6 PLP 401 B 1 
HETATM 23 H H5A1 PLP . . . E 2 37.043 19.043 10.668 1 51.02 ? H5A1 PLP 401 B 1 
HETATM 24 H H5A2 PLP . . . E 2 37.158 17.353 10.18 1 51.02 ? H5A2 PLP 401 B 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           241 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           24 
#