data_8E9V
#
_model_server_result.job_id            LqfPVQZ4VzBD5tpHlXoZmA 
_model_server_result.datetime_utc      '2024-11-07 10:30:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8e9v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    8E9V 
#
_exptl.entry_id    8E9V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8E9V 
_cell.length_a            143.83 
_cell.length_b            143.83 
_cell.length_c            81.57 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8E9V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    'P 6c' 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 260 n y 
N1 C6 PLP sing 261 n y 
C2 C2A PLP sing 262 n n 
C2 C3 PLP sing 263 n y 
C2A H2A1 PLP sing 264 n n 
C2A H2A2 PLP sing 265 n n 
C2A H2A3 PLP sing 266 n n 
C3 O3 PLP sing 267 n n 
C3 C4 PLP doub 268 n y 
O3 HO3 PLP sing 269 n n 
C4 C4A PLP sing 270 n n 
C4 C5 PLP sing 271 n y 
C4A O4A PLP doub 272 n n 
C4A H4A PLP sing 273 n n 
C5 C6 PLP doub 274 n y 
C5 C5A PLP sing 275 n n 
C6 H6 PLP sing 276 n n 
C5A O4P PLP sing 277 n n 
C5A H5A1 PLP sing 278 n n 
C5A H5A2 PLP sing 279 n n 
O4P P PLP sing 280 n n 
P O1P PLP doub 281 n n 
P O2P PLP sing 282 n n 
P O3P PLP sing 283 n n 
O2P HOP2 PLP sing 284 n n 
O3P HOP3 PLP sing 285 n n 
#
_atom_sites.entry_id                     8E9V 
_atom_sites.fract_transf_matrix[1][1]    0.006953 
_atom_sites.fract_transf_matrix[1][2]    0.004014 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008028 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012259 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 401 500 PLP PLP . 
D 3 SO4 A 1 402 600 SO4 SO4 . 
E 2 PLP B 1 401 500 PLP PLP . 
F 3 SO4 B 1 402 600 SO4 SO4 . 
G 4 HOH A 1 501 283 HOH HOH . 
G 4 HOH A 2 502 108 HOH HOH . 
G 4 HOH A 3 503 19 HOH HOH . 
G 4 HOH A 4 504 262 HOH HOH . 
G 4 HOH A 5 505 89 HOH HOH . 
G 4 HOH A 6 506 187 HOH HOH . 
G 4 HOH A 7 507 43 HOH HOH . 
G 4 HOH A 8 508 270 HOH HOH . 
G 4 HOH A 9 509 24 HOH HOH . 
G 4 HOH A 10 510 188 HOH HOH . 
G 4 HOH A 11 511 189 HOH HOH . 
G 4 HOH A 12 512 197 HOH HOH . 
G 4 HOH A 13 513 3 HOH HOH . 
G 4 HOH A 14 514 17 HOH HOH . 
G 4 HOH A 15 515 176 HOH HOH . 
G 4 HOH A 16 516 93 HOH HOH . 
G 4 HOH A 17 517 12 HOH HOH . 
G 4 HOH A 18 518 259 HOH HOH . 
G 4 HOH A 19 519 263 HOH HOH . 
G 4 HOH A 20 520 75 HOH HOH . 
G 4 HOH A 21 521 226 HOH HOH . 
G 4 HOH A 22 522 2 HOH HOH . 
G 4 HOH A 23 523 78 HOH HOH . 
G 4 HOH A 24 524 50 HOH HOH . 
G 4 HOH A 25 525 97 HOH HOH . 
G 4 HOH A 26 526 175 HOH HOH . 
G 4 HOH A 27 527 96 HOH HOH . 
G 4 HOH A 28 528 13 HOH HOH . 
G 4 HOH A 29 529 59 HOH HOH . 
G 4 HOH A 30 530 23 HOH HOH . 
G 4 HOH A 31 531 42 HOH HOH . 
G 4 HOH A 32 532 66 HOH HOH . 
G 4 HOH A 33 533 92 HOH HOH . 
G 4 HOH A 34 534 11 HOH HOH . 
G 4 HOH A 35 535 198 HOH HOH . 
G 4 HOH A 36 536 83 HOH HOH . 
G 4 HOH A 37 537 10 HOH HOH . 
G 4 HOH A 38 538 1 HOH HOH . 
G 4 HOH A 39 539 47 HOH HOH . 
G 4 HOH A 40 540 74 HOH HOH . 
G 4 HOH A 41 541 28 HOH HOH . 
G 4 HOH A 42 542 102 HOH HOH . 
G 4 HOH A 43 543 104 HOH HOH . 
G 4 HOH A 44 544 123 HOH HOH . 
G 4 HOH A 45 545 118 HOH HOH . 
G 4 HOH A 46 546 81 HOH HOH . 
G 4 HOH A 47 547 31 HOH HOH . 
G 4 HOH A 48 548 29 HOH HOH . 
G 4 HOH A 49 549 128 HOH HOH . 
G 4 HOH A 50 550 257 HOH HOH . 
G 4 HOH A 51 551 20 HOH HOH . 
G 4 HOH A 52 552 98 HOH HOH . 
G 4 HOH A 53 553 76 HOH HOH . 
G 4 HOH A 54 554 255 HOH HOH . 
G 4 HOH A 55 555 36 HOH HOH . 
G 4 HOH A 56 556 160 HOH HOH . 
G 4 HOH A 57 557 146 HOH HOH . 
G 4 HOH A 58 558 159 HOH HOH . 
G 4 HOH A 59 559 178 HOH HOH . 
G 4 HOH A 60 560 177 HOH HOH . 
G 4 HOH A 61 561 38 HOH HOH . 
G 4 HOH A 62 562 254 HOH HOH . 
G 4 HOH A 63 563 216 HOH HOH . 
G 4 HOH A 64 564 238 HOH HOH . 
G 4 HOH A 65 565 258 HOH HOH . 
G 4 HOH A 66 566 21 HOH HOH . 
G 4 HOH A 67 567 40 HOH HOH . 
G 4 HOH A 68 568 279 HOH HOH . 
G 4 HOH A 69 569 113 HOH HOH . 
G 4 HOH A 70 570 149 HOH HOH . 
G 4 HOH A 71 571 6 HOH HOH . 
G 4 HOH A 72 572 91 HOH HOH . 
G 4 HOH A 73 573 143 HOH HOH . 
G 4 HOH A 74 574 41 HOH HOH . 
G 4 HOH A 75 575 26 HOH HOH . 
G 4 HOH A 76 576 154 HOH HOH . 
G 4 HOH A 77 577 246 HOH HOH . 
G 4 HOH A 78 578 231 HOH HOH . 
G 4 HOH A 79 579 25 HOH HOH . 
G 4 HOH A 80 580 205 HOH HOH . 
G 4 HOH A 81 581 122 HOH HOH . 
G 4 HOH A 82 582 57 HOH HOH . 
G 4 HOH A 83 583 131 HOH HOH . 
G 4 HOH A 84 584 5 HOH HOH . 
G 4 HOH A 85 585 232 HOH HOH . 
G 4 HOH A 86 586 164 HOH HOH . 
G 4 HOH A 87 587 90 HOH HOH . 
G 4 HOH A 88 588 173 HOH HOH . 
G 4 HOH A 89 589 170 HOH HOH . 
G 4 HOH A 90 590 145 HOH HOH . 
G 4 HOH A 91 591 167 HOH HOH . 
G 4 HOH A 92 592 169 HOH HOH . 
G 4 HOH A 93 593 204 HOH HOH . 
G 4 HOH A 94 594 280 HOH HOH . 
G 4 HOH A 95 595 106 HOH HOH . 
G 4 HOH A 96 596 127 HOH HOH . 
G 4 HOH A 97 597 142 HOH HOH . 
G 4 HOH A 98 598 278 HOH HOH . 
G 4 HOH A 99 599 64 HOH HOH . 
G 4 HOH A 100 600 133 HOH HOH . 
G 4 HOH A 101 601 150 HOH HOH . 
G 4 HOH A 102 602 210 HOH HOH . 
G 4 HOH A 103 603 249 HOH HOH . 
G 4 HOH A 104 604 157 HOH HOH . 
G 4 HOH A 105 605 163 HOH HOH . 
G 4 HOH A 106 606 179 HOH HOH . 
G 4 HOH A 107 607 16 HOH HOH . 
G 4 HOH A 108 608 110 HOH HOH . 
G 4 HOH A 109 609 151 HOH HOH . 
G 4 HOH A 110 610 228 HOH HOH . 
G 4 HOH A 111 611 260 HOH HOH . 
G 4 HOH A 112 612 87 HOH HOH . 
G 4 HOH A 113 613 265 HOH HOH . 
G 4 HOH A 114 614 117 HOH HOH . 
G 4 HOH A 115 615 266 HOH HOH . 
G 4 HOH A 116 616 221 HOH HOH . 
G 4 HOH A 117 617 126 HOH HOH . 
G 4 HOH A 118 618 184 HOH HOH . 
G 4 HOH A 119 619 171 HOH HOH . 
G 4 HOH A 120 620 206 HOH HOH . 
G 4 HOH A 121 621 195 HOH HOH . 
G 4 HOH A 122 622 71 HOH HOH . 
G 4 HOH A 123 623 207 HOH HOH . 
H 4 HOH B 1 501 286 HOH HOH . 
H 4 HOH B 2 502 61 HOH HOH . 
H 4 HOH B 3 503 114 HOH HOH . 
H 4 HOH B 4 504 44 HOH HOH . 
H 4 HOH B 5 505 273 HOH HOH . 
H 4 HOH B 6 506 99 HOH HOH . 
H 4 HOH B 7 507 269 HOH HOH . 
H 4 HOH B 8 508 60 HOH HOH . 
H 4 HOH B 9 509 268 HOH HOH . 
H 4 HOH B 10 510 125 HOH HOH . 
H 4 HOH B 11 511 182 HOH HOH . 
H 4 HOH B 12 512 185 HOH HOH . 
H 4 HOH B 13 513 84 HOH HOH . 
H 4 HOH B 14 514 124 HOH HOH . 
H 4 HOH B 15 515 199 HOH HOH . 
H 4 HOH B 16 516 67 HOH HOH . 
H 4 HOH B 17 517 69 HOH HOH . 
H 4 HOH B 18 518 85 HOH HOH . 
H 4 HOH B 19 519 48 HOH HOH . 
H 4 HOH B 20 520 158 HOH HOH . 
H 4 HOH B 21 521 253 HOH HOH . 
H 4 HOH B 22 522 112 HOH HOH . 
H 4 HOH B 23 523 162 HOH HOH . 
H 4 HOH B 24 524 32 HOH HOH . 
H 4 HOH B 25 525 190 HOH HOH . 
H 4 HOH B 26 526 161 HOH HOH . 
H 4 HOH B 27 527 275 HOH HOH . 
H 4 HOH B 28 528 86 HOH HOH . 
H 4 HOH B 29 529 27 HOH HOH . 
H 4 HOH B 30 530 15 HOH HOH . 
H 4 HOH B 31 531 155 HOH HOH . 
H 4 HOH B 32 532 18 HOH HOH . 
H 4 HOH B 33 533 168 HOH HOH . 
H 4 HOH B 34 534 215 HOH HOH . 
H 4 HOH B 35 535 58 HOH HOH . 
H 4 HOH B 36 536 56 HOH HOH . 
H 4 HOH B 37 537 165 HOH HOH . 
H 4 HOH B 38 538 63 HOH HOH . 
H 4 HOH B 39 539 107 HOH HOH . 
H 4 HOH B 40 540 8 HOH HOH . 
H 4 HOH B 41 541 276 HOH HOH . 
H 4 HOH B 42 542 256 HOH HOH . 
H 4 HOH B 43 543 129 HOH HOH . 
H 4 HOH B 44 544 103 HOH HOH . 
H 4 HOH B 45 545 166 HOH HOH . 
H 4 HOH B 46 546 261 HOH HOH . 
H 4 HOH B 47 547 121 HOH HOH . 
H 4 HOH B 48 548 156 HOH HOH . 
H 4 HOH B 49 549 4 HOH HOH . 
H 4 HOH B 50 550 208 HOH HOH . 
H 4 HOH B 51 551 272 HOH HOH . 
H 4 HOH B 52 552 277 HOH HOH . 
H 4 HOH B 53 553 239 HOH HOH . 
H 4 HOH B 54 554 14 HOH HOH . 
H 4 HOH B 55 555 271 HOH HOH . 
H 4 HOH B 56 556 73 HOH HOH . 
H 4 HOH B 57 557 62 HOH HOH . 
H 4 HOH B 58 558 281 HOH HOH . 
H 4 HOH B 59 559 282 HOH HOH . 
H 4 HOH B 60 560 79 HOH HOH . 
H 4 HOH B 61 561 77 HOH HOH . 
H 4 HOH B 62 562 88 HOH HOH . 
H 4 HOH B 63 563 45 HOH HOH . 
H 4 HOH B 64 564 211 HOH HOH . 
H 4 HOH B 65 565 35 HOH HOH . 
H 4 HOH B 66 566 65 HOH HOH . 
H 4 HOH B 67 567 144 HOH HOH . 
H 4 HOH B 68 568 34 HOH HOH . 
H 4 HOH B 69 569 111 HOH HOH . 
H 4 HOH B 70 570 153 HOH HOH . 
H 4 HOH B 71 571 53 HOH HOH . 
H 4 HOH B 72 572 80 HOH HOH . 
H 4 HOH B 73 573 183 HOH HOH . 
H 4 HOH B 74 574 240 HOH HOH . 
H 4 HOH B 75 575 51 HOH HOH . 
H 4 HOH B 76 576 30 HOH HOH . 
H 4 HOH B 77 577 139 HOH HOH . 
H 4 HOH B 78 578 227 HOH HOH . 
H 4 HOH B 79 579 39 HOH HOH . 
H 4 HOH B 80 580 55 HOH HOH . 
H 4 HOH B 81 581 120 HOH HOH . 
H 4 HOH B 82 582 82 HOH HOH . 
H 4 HOH B 83 583 251 HOH HOH . 
H 4 HOH B 84 584 49 HOH HOH . 
H 4 HOH B 85 585 212 HOH HOH . 
H 4 HOH B 86 586 193 HOH HOH . 
H 4 HOH B 87 587 141 HOH HOH . 
H 4 HOH B 88 588 274 HOH HOH . 
H 4 HOH B 89 589 136 HOH HOH . 
H 4 HOH B 90 590 196 HOH HOH . 
H 4 HOH B 91 591 264 HOH HOH . 
H 4 HOH B 92 592 285 HOH HOH . 
H 4 HOH B 93 593 115 HOH HOH . 
H 4 HOH B 94 594 233 HOH HOH . 
H 4 HOH B 95 595 201 HOH HOH . 
H 4 HOH B 96 596 101 HOH HOH . 
H 4 HOH B 97 597 223 HOH HOH . 
H 4 HOH B 98 598 135 HOH HOH . 
H 4 HOH B 99 599 284 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . E 2 30.932 -20.514 12.817 1 40.27 ? N1 PLP 401 B 1 
HETATM 2 C C2 PLP . . . E 2 31.429 -19.408 13.466 1 43.74 ? C2 PLP 401 B 1 
HETATM 3 C C2A PLP . . . E 2 30.578 -18.178 13.588 1 44.05 ? C2A PLP 401 B 1 
HETATM 4 C C3 PLP . . . E 2 32.709 -19.434 14.01 1 43.87 ? C3 PLP 401 B 1 
HETATM 5 O O3 PLP . . . E 2 33.172 -18.31 14.643 1 43.04 ? O3 PLP 401 B 1 
HETATM 6 C C4 PLP . . . E 2 33.511 -20.574 13.901 1 38.03 ? C4 PLP 401 B 1 
HETATM 7 C C4A PLP . . . E 2 34.907 -20.538 14.476 1 42.21 ? C4A PLP 401 B 1 
HETATM 8 O O4A PLP . . . E 2 35.716 -21.424 14.214 1 48.68 ? O4A PLP 401 B 1 
HETATM 9 C C5 PLP . . . E 2 32.989 -21.691 13.236 1 35.61 ? C5 PLP 401 B 1 
HETATM 10 C C6 PLP . . . E 2 31.706 -21.648 12.703 1 37.52 ? C6 PLP 401 B 1 
HETATM 11 C C5A PLP . . . E 2 33.751 -22.982 13.051 1 33.52 ? C5A PLP 401 B 1 
HETATM 12 O O4P PLP . . . E 2 34.189 -23.513 14.277 1 30.14 ? O4P PLP 401 B 1 
HETATM 13 P P PLP . . . E 2 34.93 -24.94 14.296 1 23.98 ? P PLP 401 B 1 
HETATM 14 O O1P PLP . . . E 2 34.952 -25.516 12.898 1 23.99 ? O1P PLP 401 B 1 
HETATM 15 O O2P PLP . . . E 2 34.235 -25.89 15.239 1 24 ? O2P PLP 401 B 1 
HETATM 16 O O3P PLP . . . E 2 36.352 -24.707 14.748 1 25.69 ? O3P PLP 401 B 1 
HETATM 17 H H2A1 PLP . . . E 2 31.115 -17.42 14.159 1 52.86 ? H2A1 PLP 401 B 1 
HETATM 18 H H2A2 PLP . . . E 2 29.649 -18.428 14.101 1 52.86 ? H2A2 PLP 401 B 1 
HETATM 19 H H2A3 PLP . . . E 2 30.352 -17.792 12.594 1 52.86 ? H2A3 PLP 401 B 1 
HETATM 20 H HO3 PLP . . . E 2 34.121 -18.184 14.432 1 51.65 ? HO3 PLP 401 B 1 
HETATM 21 H H4A PLP . . . E 2 35.189 -19.7 15.113 1 50.65 ? H4A PLP 401 B 1 
HETATM 22 H H6 PLP . . . E 2 31.307 -22.523 12.189 1 45.02 ? H6 PLP 401 B 1 
HETATM 23 H H5A1 PLP . . . E 2 34.613 -22.801 12.409 1 40.23 ? H5A1 PLP 401 B 1 
HETATM 24 H H5A2 PLP . . . E 2 33.109 -23.709 12.553 1 40.23 ? H5A2 PLP 401 B 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           222 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           24 
#