data_8EA5
#
_model_server_result.job_id            UvC3La2GNTHSkW1gG3LeNw 
_model_server_result.datetime_utc      '2025-01-25 10:54:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ea5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    8EA5 
#
_exptl.entry_id    8EA5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              446.37 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3S,5aS,8aR)-3-benzyl-6-[(3,5-dichlorophenyl)methyl]-1,4-dimethyloctahydropyrrolo[3,2-e][1,4]diazepine-2,5-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.75 
_cell.angle_gamma         90 
_cell.entry_id            8EA5 
_cell.length_a            89.107 
_cell.length_b            43.671 
_cell.length_c            77.766 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EA5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 A CYS 96 1_555 A SG CYS 18 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf2 A SG CYS 12 A CYS 99 1_555 A SG CYS 23 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf3 A SG CYS 40 A CYS 127 1_555 A SG CYS 124 A CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 A SG CYS 102 A CYS 189 1_555 A SG CYS 116 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf5 B SG CYS 9 B CYS 96 1_555 B SG CYS 18 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf6 B SG CYS 12 B CYS 99 1_555 B SG CYS 23 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 B SG CYS 40 B CYS 127 1_555 B SG CYS 124 B CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf8 B SG CYS 102 B CYS 189 1_555 B SG CYS 116 B CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
#
_chem_comp.formula           'C23 H25 Cl2 N3 O2' 
_chem_comp.formula_weight    446.37 
_chem_comp.id                VN8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3S,5aS,8aR)-3-benzyl-6-[(3,5-dichlorophenyl)methyl]-1,4-dimethyloctahydropyrrolo[3,2-e][1,4]diazepine-2,5-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL19 C18 VN8 sing 399 n n 
C17 C18 VN8 doub 400 n y 
C17 C15 VN8 sing 401 n y 
C18 C20 VN8 sing 402 n y 
CL16 C15 VN8 sing 403 n n 
C15 C14 VN8 doub 404 n y 
C20 C13 VN8 doub 405 n y 
C14 C13 VN8 sing 406 n y 
C13 C12 VN8 sing 407 n n 
C12 N11 VN8 sing 408 n n 
C10 N11 VN8 sing 409 n n 
C10 C9 VN8 sing 410 n n 
N11 C5 VN8 sing 411 n n 
C31 C32 VN8 doub 412 n y 
C31 C30 VN8 sing 413 n y 
C32 C27 VN8 sing 414 n y 
C9 C7 VN8 sing 415 n n 
C30 C29 VN8 doub 416 n y 
C5 C7 VN8 sing 417 n n 
C5 C3 VN8 sing 418 n n 
C7 N21 VN8 sing 419 n n 
C3 O4 VN8 doub 420 n n 
C3 N2 VN8 sing 421 n n 
C27 C26 VN8 sing 422 n n 
C27 C28 VN8 doub 423 n y 
C25 N2 VN8 sing 424 n n 
C25 C26 VN8 sing 425 n n 
C25 C23 VN8 sing 426 n n 
C29 C28 VN8 sing 427 n y 
N2 C1 VN8 sing 428 n n 
N21 C23 VN8 sing 429 n n 
N21 C22 VN8 sing 430 n n 
C23 O24 VN8 doub 431 n n 
C1 H1 VN8 sing 432 n n 
C1 H2 VN8 sing 433 n n 
C1 H3 VN8 sing 434 n n 
C10 H4 VN8 sing 435 n n 
C10 H5 VN8 sing 436 n n 
C12 H6 VN8 sing 437 n n 
C12 H7 VN8 sing 438 n n 
C14 H8 VN8 sing 439 n n 
C17 H9 VN8 sing 440 n n 
C20 H10 VN8 sing 441 n n 
C22 H11 VN8 sing 442 n n 
C22 H12 VN8 sing 443 n n 
C22 H13 VN8 sing 444 n n 
C25 H14 VN8 sing 445 n n 
C26 H15 VN8 sing 446 n n 
C26 H16 VN8 sing 447 n n 
C28 H17 VN8 sing 448 n n 
C29 H18 VN8 sing 449 n n 
C30 H19 VN8 sing 450 n n 
C31 H20 VN8 sing 451 n n 
C32 H21 VN8 sing 452 n n 
C5 H22 VN8 sing 453 n n 
C7 H23 VN8 sing 454 n n 
C9 H24 VN8 sing 455 n n 
C9 H25 VN8 sing 456 n n 
#
_atom_sites.entry_id                     8EA5 
_atom_sites.fract_transf_matrix[1][1]    0.011222 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005413 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022898 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014277 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 VN8 A 1 301 218 VN8 UNL . 
D 3 PGE A 1 302 301 PGE PGE . 
E 3 PGE B 1 301 217 PGE PGE . 
F 4 HOH A 1 401 358 HOH HOH . 
F 4 HOH A 2 402 335 HOH HOH . 
F 4 HOH A 3 403 341 HOH HOH . 
F 4 HOH A 4 404 333 HOH HOH . 
F 4 HOH A 5 405 366 HOH HOH . 
F 4 HOH A 6 406 313 HOH HOH . 
F 4 HOH A 7 407 304 HOH HOH . 
F 4 HOH A 8 408 320 HOH HOH . 
F 4 HOH A 9 409 328 HOH HOH . 
F 4 HOH A 10 410 318 HOH HOH . 
F 4 HOH A 11 411 308 HOH HOH . 
F 4 HOH A 12 412 309 HOH HOH . 
F 4 HOH A 13 413 321 HOH HOH . 
F 4 HOH A 14 414 360 HOH HOH . 
F 4 HOH A 15 415 354 HOH HOH . 
F 4 HOH A 16 416 343 HOH HOH . 
F 4 HOH A 17 417 342 HOH HOH . 
F 4 HOH A 18 418 345 HOH HOH . 
F 4 HOH A 19 419 307 HOH HOH . 
F 4 HOH A 20 420 332 HOH HOH . 
F 4 HOH A 21 421 311 HOH HOH . 
F 4 HOH A 22 422 339 HOH HOH . 
F 4 HOH A 23 423 302 HOH HOH . 
F 4 HOH A 24 424 316 HOH HOH . 
F 4 HOH A 25 425 319 HOH HOH . 
F 4 HOH A 26 426 346 HOH HOH . 
F 4 HOH A 27 427 337 HOH HOH . 
F 4 HOH A 28 428 315 HOH HOH . 
F 4 HOH A 29 429 334 HOH HOH . 
F 4 HOH A 30 430 329 HOH HOH . 
F 4 HOH A 31 431 324 HOH HOH . 
F 4 HOH A 32 432 327 HOH HOH . 
F 4 HOH A 33 433 351 HOH HOH . 
F 4 HOH A 34 434 303 HOH HOH . 
F 4 HOH A 35 435 365 HOH HOH . 
F 4 HOH A 36 436 355 HOH HOH . 
F 4 HOH A 37 437 323 HOH HOH . 
F 4 HOH A 38 438 340 HOH HOH . 
F 4 HOH A 39 439 326 HOH HOH . 
F 4 HOH A 40 440 325 HOH HOH . 
F 4 HOH A 41 441 336 HOH HOH . 
F 4 HOH A 42 442 348 HOH HOH . 
F 4 HOH A 43 443 361 HOH HOH . 
F 4 HOH A 44 444 306 HOH HOH . 
F 4 HOH A 45 445 312 HOH HOH . 
F 4 HOH A 46 446 314 HOH HOH . 
F 4 HOH A 47 447 353 HOH HOH . 
F 4 HOH A 48 448 322 HOH HOH . 
F 4 HOH A 49 449 356 HOH HOH . 
F 4 HOH A 50 450 357 HOH HOH . 
F 4 HOH A 51 451 369 HOH HOH . 
F 4 HOH A 52 452 352 HOH HOH . 
F 4 HOH A 53 453 359 HOH HOH . 
F 4 HOH A 54 454 344 HOH HOH . 
F 4 HOH A 55 455 305 HOH HOH . 
F 4 HOH A 56 456 367 HOH HOH . 
F 4 HOH A 57 457 347 HOH HOH . 
F 4 HOH A 58 458 338 HOH HOH . 
F 4 HOH A 59 459 331 HOH HOH . 
F 4 HOH A 60 460 317 HOH HOH . 
F 4 HOH A 61 461 362 HOH HOH . 
F 4 HOH A 62 462 310 HOH HOH . 
F 4 HOH A 63 463 350 HOH HOH . 
F 4 HOH A 64 464 363 HOH HOH . 
F 4 HOH A 65 465 270 HOH HOH . 
F 4 HOH A 66 466 364 HOH HOH . 
F 4 HOH A 67 467 349 HOH HOH . 
F 4 HOH A 68 468 330 HOH HOH . 
F 4 HOH A 69 469 368 HOH HOH . 
G 4 HOH B 1 401 263 HOH HOH . 
G 4 HOH B 2 402 264 HOH HOH . 
G 4 HOH B 3 403 271 HOH HOH . 
G 4 HOH B 4 404 234 HOH HOH . 
G 4 HOH B 5 405 249 HOH HOH . 
G 4 HOH B 6 406 230 HOH HOH . 
G 4 HOH B 7 407 257 HOH HOH . 
G 4 HOH B 8 408 219 HOH HOH . 
G 4 HOH B 9 409 225 HOH HOH . 
G 4 HOH B 10 410 255 HOH HOH . 
G 4 HOH B 11 411 247 HOH HOH . 
G 4 HOH B 12 412 221 HOH HOH . 
G 4 HOH B 13 413 226 HOH HOH . 
G 4 HOH B 14 414 229 HOH HOH . 
G 4 HOH B 15 415 237 HOH HOH . 
G 4 HOH B 16 416 251 HOH HOH . 
G 4 HOH B 17 417 240 HOH HOH . 
G 4 HOH B 18 418 275 HOH HOH . 
G 4 HOH B 19 419 269 HOH HOH . 
G 4 HOH B 20 420 253 HOH HOH . 
G 4 HOH B 21 421 231 HOH HOH . 
G 4 HOH B 22 422 227 HOH HOH . 
G 4 HOH B 23 423 274 HOH HOH . 
G 4 HOH B 24 424 220 HOH HOH . 
G 4 HOH B 25 425 232 HOH HOH . 
G 4 HOH B 26 426 245 HOH HOH . 
G 4 HOH B 27 427 267 HOH HOH . 
G 4 HOH B 28 428 254 HOH HOH . 
G 4 HOH B 29 429 235 HOH HOH . 
G 4 HOH B 30 430 239 HOH HOH . 
G 4 HOH B 31 431 272 HOH HOH . 
G 4 HOH B 32 432 262 HOH HOH . 
G 4 HOH B 33 433 238 HOH HOH . 
G 4 HOH B 34 434 244 HOH HOH . 
G 4 HOH B 35 435 248 HOH HOH . 
G 4 HOH B 36 436 243 HOH HOH . 
G 4 HOH B 37 437 250 HOH HOH . 
G 4 HOH B 38 438 246 HOH HOH . 
G 4 HOH B 39 439 261 HOH HOH . 
G 4 HOH B 40 440 252 HOH HOH . 
G 4 HOH B 41 441 256 HOH HOH . 
G 4 HOH B 42 442 233 HOH HOH . 
G 4 HOH B 43 443 260 HOH HOH . 
G 4 HOH B 44 444 222 HOH HOH . 
G 4 HOH B 45 445 228 HOH HOH . 
G 4 HOH B 46 446 276 HOH HOH . 
G 4 HOH B 47 447 224 HOH HOH . 
G 4 HOH B 48 448 258 HOH HOH . 
G 4 HOH B 49 449 236 HOH HOH . 
G 4 HOH B 50 450 242 HOH HOH . 
G 4 HOH B 51 451 223 HOH HOH . 
G 4 HOH B 52 452 268 HOH HOH . 
G 4 HOH B 53 453 241 HOH HOH . 
G 4 HOH B 54 454 259 HOH HOH . 
G 4 HOH B 55 455 273 HOH HOH . 
G 4 HOH B 56 456 265 HOH HOH . 
G 4 HOH B 57 457 266 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 VN8 . . . C 2 -0.968 -16.597 21.519 1 30.12 ? C1 VN8 301 A 1 
HETATM 2 C C10 VN8 . . . C 2 3.191 -15.967 17.81 1 26.55 ? C10 VN8 301 A 1 
HETATM 3 C C12 VN8 . . . C 2 1.23 -17.352 17.15 1 28.89 ? C12 VN8 301 A 1 
HETATM 4 C C13 VN8 . . . C 2 0.938 -16.687 15.828 1 24.31 ? C13 VN8 301 A 1 
HETATM 5 C C14 VN8 . . . C 2 0.575 -15.339 15.776 1 22.61 ? C14 VN8 301 A 1 
HETATM 6 C C15 VN8 . . . C 2 0.305 -14.72 14.551 1 34.35 ? C15 VN8 301 A 1 
HETATM 7 C C17 VN8 . . . C 2 0.405 -15.415 13.347 1 45.78 ? C17 VN8 301 A 1 
HETATM 8 C C18 VN8 . . . C 2 0.776 -16.764 13.361 1 48.66 ? C18 VN8 301 A 1 
HETATM 9 C C20 VN8 . . . C 2 1.03 -17.389 14.6 1 38.06 ? C20 VN8 301 A 1 
HETATM 10 C C22 VN8 . . . C 2 3.863 -15.822 22.439 1 27.18 ? C22 VN8 301 A 1 
HETATM 11 C C23 VN8 . . . C 2 1.696 -14.957 21.791 1 28.88 ? C23 VN8 301 A 1 
HETATM 12 C C25 VN8 . . . C 2 0.626 -14.886 20.69 1 35.32 ? C25 VN8 301 A 1 
HETATM 13 C C26 VN8 . . . C 2 -0.563 -13.862 20.818 1 32.92 ? C26 VN8 301 A 1 
HETATM 14 C C27 VN8 . . . C 2 0.076 -12.622 20.31 1 25.73 ? C27 VN8 301 A 1 
HETATM 15 C C28 VN8 . . . C 2 0.351 -11.54 21.128 1 27.27 ? C28 VN8 301 A 1 
HETATM 16 C C29 VN8 . . . C 2 0.995 -10.405 20.633 1 27.47 ? C29 VN8 301 A 1 
HETATM 17 C C3 VN8 . . . C 2 0.809 -17.445 20.247 1 19.42 ? C3 VN8 301 A 1 
HETATM 18 C C30 VN8 . . . C 2 1.45 -10.344 19.318 1 28.46 ? C30 VN8 301 A 1 
HETATM 19 C C31 VN8 . . . C 2 1.2 -11.423 18.483 1 28.6 ? C31 VN8 301 A 1 
HETATM 20 C C32 VN8 . . . C 2 0.495 -12.523 18.973 1 29.8 ? C32 VN8 301 A 1 
HETATM 21 C C5 VN8 . . . C 2 2.091 -17.189 19.513 1 20.22 ? C5 VN8 301 A 1 
HETATM 22 C C7 VN8 . . . C 2 3.209 -16.42 20.211 1 19.81 ? C7 VN8 301 A 1 
HETATM 23 C C9 VN8 . . . C 2 3.715 -15.454 19.15 1 23.12 ? C9 VN8 301 A 1 
HETATM 24 N N11 VN8 . . . C 2 1.812 -16.434 18.189 1 25.98 ? N11 VN8 301 A 1 
HETATM 25 N N2 VN8 . . . C 2 0.138 -16.286 20.673 1 24.01 ? N2 VN8 301 A 1 
HETATM 26 N N21 VN8 . . . C 2 2.817 -15.745 21.482 1 23.57 ? N21 VN8 301 A 1 
HETATM 27 O O24 VN8 . . . C 2 1.589 -14.419 22.884 1 25.02 ? O24 VN8 301 A 1 
HETATM 28 O O4 VN8 . . . C 2 0.437 -18.6 20.447 1 27.41 ? O4 VN8 301 A 1 
HETATM 29 CL CL16 VN8 . . . C 2 -0.169 -13.055 14.512 1 39.99 ? CL16 VN8 301 A 1 
HETATM 30 CL CL19 VN8 . . . C 2 0.883 -17.568 11.797 1 51.7 ? CL19 VN8 301 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           30 
#