data_8EA8 # _model_server_result.job_id FVoQULi1Khx-abB5hnpCZg _model_server_result.datetime_utc '2024-10-11 02:19:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ea8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 8EA8 # _exptl.entry_id 8EA8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 495.417 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl}-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.01 _cell.angle_gamma 90 _cell.entry_id 8EA8 _cell.length_a 100.09 _cell.length_b 43.675 _cell.length_c 72.591 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EA8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 B CYS 96 1_555 A SG CYS 18 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 12 B CYS 99 1_555 A SG CYS 23 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 40 B CYS 127 1_555 A SG CYS 124 B CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 102 B CYS 189 1_555 A SG CYS 116 B CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 B SG CYS 9 A CYS 96 1_555 B SG CYS 18 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 B SG CYS 12 A CYS 99 1_555 B SG CYS 23 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 B SG CYS 40 A CYS 127 1_555 B SG CYS 124 A CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf8 B SG CYS 102 A CYS 189 1_555 B SG CYS 116 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'C24 H19 F6 N3 O2' _chem_comp.formula_weight 495.417 _chem_comp.id VML _chem_comp.mon_nstd_flag . _chem_comp.name N-{(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl}-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F24 C22 VML sing 415 n n F25 C22 VML sing 416 n n C28 C29 VML doub 417 n y C28 C27 VML sing 418 n y C29 C30 VML sing 419 n y F33 C32 VML sing 420 n n C22 C19 VML sing 421 n n C22 F23 VML sing 422 n n C20 C19 VML doub 423 n y C20 C21 VML sing 424 n y C19 C18 VML sing 425 n y C21 C16 VML doub 426 n y C27 C26 VML doub 427 n y C30 C32 VML sing 428 n n C30 C31 VML doub 429 n y C32 F34 VML sing 430 n n C32 F35 VML sing 431 n n C18 C17 VML doub 432 n y C16 C17 VML sing 433 n y C16 C15 VML sing 434 n n C14 C15 VML doub 435 n y C14 C13 VML sing 436 n y C26 C31 VML sing 437 n y C26 C6 VML sing 438 n n C15 C10 VML sing 439 n y C13 N12 VML doub 440 n y C10 C8 VML sing 441 n n C10 C11 VML doub 442 n y N7 C8 VML sing 443 n n N7 C6 VML sing 444 n n N12 C11 VML sing 445 n y C8 O9 VML doub 446 n n C6 C4 VML sing 447 n n O5 C4 VML doub 448 n n C4 N2 VML sing 449 n n N2 C1 VML sing 450 n n N2 C3 VML sing 451 n n C1 H1 VML sing 452 n n C1 H2 VML sing 453 n n C1 H3 VML sing 454 n n C11 H4 VML sing 455 n n C13 H5 VML sing 456 n n C14 H6 VML sing 457 n n C17 H7 VML sing 458 n n C18 H8 VML sing 459 n n C20 H9 VML sing 460 n n C21 H10 VML sing 461 n n C27 H11 VML sing 462 n n C28 H12 VML sing 463 n n C29 H13 VML sing 464 n n C3 H14 VML sing 465 n n C3 H15 VML sing 466 n n C3 H16 VML sing 467 n n C31 H17 VML sing 468 n n C6 H18 VML sing 469 n n N7 H19 VML sing 470 n n # _atom_sites.entry_id 8EA8 _atom_sites.fract_transf_matrix[1][1] 0.009991 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006998 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016819 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PGE B 1 401 401 PGE PGE . D 2 PGE B 1 402 501 PGE PGE . E 3 PEG B 1 403 502 PEG PEG . F 4 VML B 1 404 503 VML UNL . G 2 PGE B 1 405 504 PGE PGE . H 2 PGE A 1 301 215 PGE PGE . I 2 PGE A 1 302 216 PGE PGE . J 3 PEG A 1 303 217 PEG PEG . K 2 PGE A 1 304 218 PGE PGE . L 5 HOH B 1 501 520 HOH HOH . L 5 HOH B 2 502 565 HOH HOH . L 5 HOH B 3 503 541 HOH HOH . L 5 HOH B 4 504 522 HOH HOH . L 5 HOH B 5 505 558 HOH HOH . L 5 HOH B 6 506 511 HOH HOH . L 5 HOH B 7 507 507 HOH HOH . L 5 HOH B 8 508 529 HOH HOH . L 5 HOH B 9 509 506 HOH HOH . L 5 HOH B 10 510 543 HOH HOH . L 5 HOH B 11 511 538 HOH HOH . L 5 HOH B 12 512 515 HOH HOH . L 5 HOH B 13 513 512 HOH HOH . L 5 HOH B 14 514 516 HOH HOH . L 5 HOH B 15 515 508 HOH HOH . L 5 HOH B 16 516 527 HOH HOH . L 5 HOH B 17 517 542 HOH HOH . L 5 HOH B 18 518 549 HOH HOH . L 5 HOH B 19 519 505 HOH HOH . L 5 HOH B 20 520 510 HOH HOH . L 5 HOH B 21 521 540 HOH HOH . L 5 HOH B 22 522 556 HOH HOH . L 5 HOH B 23 523 518 HOH HOH . L 5 HOH B 24 524 526 HOH HOH . L 5 HOH B 25 525 534 HOH HOH . L 5 HOH B 26 526 536 HOH HOH . L 5 HOH B 27 527 532 HOH HOH . L 5 HOH B 28 528 554 HOH HOH . L 5 HOH B 29 529 519 HOH HOH . L 5 HOH B 30 530 530 HOH HOH . L 5 HOH B 31 531 537 HOH HOH . L 5 HOH B 32 532 539 HOH HOH . L 5 HOH B 33 533 544 HOH HOH . L 5 HOH B 34 534 509 HOH HOH . L 5 HOH B 35 535 528 HOH HOH . L 5 HOH B 36 536 521 HOH HOH . L 5 HOH B 37 537 513 HOH HOH . L 5 HOH B 38 538 564 HOH HOH . L 5 HOH B 39 539 531 HOH HOH . L 5 HOH B 40 540 533 HOH HOH . L 5 HOH B 41 541 525 HOH HOH . L 5 HOH B 42 542 546 HOH HOH . L 5 HOH B 43 543 545 HOH HOH . L 5 HOH B 44 544 551 HOH HOH . L 5 HOH B 45 545 557 HOH HOH . L 5 HOH B 46 546 548 HOH HOH . L 5 HOH B 47 547 562 HOH HOH . L 5 HOH B 48 548 555 HOH HOH . L 5 HOH B 49 549 284 HOH HOH . L 5 HOH B 50 550 514 HOH HOH . L 5 HOH B 51 551 517 HOH HOH . L 5 HOH B 52 552 552 HOH HOH . L 5 HOH B 53 553 567 HOH HOH . L 5 HOH B 54 554 547 HOH HOH . L 5 HOH B 55 555 550 HOH HOH . L 5 HOH B 56 556 553 HOH HOH . L 5 HOH B 57 557 559 HOH HOH . L 5 HOH B 58 558 566 HOH HOH . L 5 HOH B 59 559 568 HOH HOH . L 5 HOH B 60 560 563 HOH HOH . L 5 HOH B 61 561 309 HOH HOH . L 5 HOH B 62 562 300 HOH HOH . M 5 HOH A 1 401 260 HOH HOH . M 5 HOH A 2 402 295 HOH HOH . M 5 HOH A 3 403 243 HOH HOH . M 5 HOH A 4 404 270 HOH HOH . M 5 HOH A 5 405 275 HOH HOH . M 5 HOH A 6 406 223 HOH HOH . M 5 HOH A 7 407 296 HOH HOH . M 5 HOH A 8 408 238 HOH HOH . M 5 HOH A 9 409 524 HOH HOH . M 5 HOH A 10 410 271 HOH HOH . M 5 HOH A 11 411 239 HOH HOH . M 5 HOH A 12 412 307 HOH HOH . M 5 HOH A 13 413 219 HOH HOH . M 5 HOH A 14 414 233 HOH HOH . M 5 HOH A 15 415 247 HOH HOH . M 5 HOH A 16 416 245 HOH HOH . M 5 HOH A 17 417 234 HOH HOH . M 5 HOH A 18 418 237 HOH HOH . M 5 HOH A 19 419 244 HOH HOH . M 5 HOH A 20 420 225 HOH HOH . M 5 HOH A 21 421 535 HOH HOH . M 5 HOH A 22 422 232 HOH HOH . M 5 HOH A 23 423 224 HOH HOH . M 5 HOH A 24 424 236 HOH HOH . M 5 HOH A 25 425 289 HOH HOH . M 5 HOH A 26 426 269 HOH HOH . M 5 HOH A 27 427 231 HOH HOH . M 5 HOH A 28 428 280 HOH HOH . M 5 HOH A 29 429 249 HOH HOH . M 5 HOH A 30 430 222 HOH HOH . M 5 HOH A 31 431 286 HOH HOH . M 5 HOH A 32 432 276 HOH HOH . M 5 HOH A 33 433 265 HOH HOH . M 5 HOH A 34 434 248 HOH HOH . M 5 HOH A 35 435 264 HOH HOH . M 5 HOH A 36 436 292 HOH HOH . M 5 HOH A 37 437 254 HOH HOH . M 5 HOH A 38 438 297 HOH HOH . M 5 HOH A 39 439 229 HOH HOH . M 5 HOH A 40 440 282 HOH HOH . M 5 HOH A 41 441 226 HOH HOH . M 5 HOH A 42 442 252 HOH HOH . M 5 HOH A 43 443 230 HOH HOH . M 5 HOH A 44 444 235 HOH HOH . M 5 HOH A 45 445 241 HOH HOH . M 5 HOH A 46 446 281 HOH HOH . M 5 HOH A 47 447 303 HOH HOH . M 5 HOH A 48 448 220 HOH HOH . M 5 HOH A 49 449 283 HOH HOH . M 5 HOH A 50 450 253 HOH HOH . M 5 HOH A 51 451 308 HOH HOH . M 5 HOH A 52 452 258 HOH HOH . M 5 HOH A 53 453 221 HOH HOH . M 5 HOH A 54 454 227 HOH HOH . M 5 HOH A 55 455 246 HOH HOH . M 5 HOH A 56 456 298 HOH HOH . M 5 HOH A 57 457 257 HOH HOH . M 5 HOH A 58 458 302 HOH HOH . M 5 HOH A 59 459 290 HOH HOH . M 5 HOH A 60 460 266 HOH HOH . M 5 HOH A 61 461 267 HOH HOH . M 5 HOH A 62 462 240 HOH HOH . M 5 HOH A 63 463 301 HOH HOH . M 5 HOH A 64 464 304 HOH HOH . M 5 HOH A 65 465 279 HOH HOH . M 5 HOH A 66 466 278 HOH HOH . M 5 HOH A 67 467 273 HOH HOH . M 5 HOH A 68 468 294 HOH HOH . M 5 HOH A 69 469 228 HOH HOH . M 5 HOH A 70 470 312 HOH HOH . M 5 HOH A 71 471 255 HOH HOH . M 5 HOH A 72 472 305 HOH HOH . M 5 HOH A 73 473 317 HOH HOH . M 5 HOH A 74 474 250 HOH HOH . M 5 HOH A 75 475 285 HOH HOH . M 5 HOH A 76 476 242 HOH HOH . M 5 HOH A 77 477 291 HOH HOH . M 5 HOH A 78 478 277 HOH HOH . M 5 HOH A 79 479 268 HOH HOH . M 5 HOH A 80 480 251 HOH HOH . M 5 HOH A 81 481 261 HOH HOH . M 5 HOH A 82 482 262 HOH HOH . M 5 HOH A 83 483 287 HOH HOH . M 5 HOH A 84 484 263 HOH HOH . M 5 HOH A 85 485 293 HOH HOH . M 5 HOH A 86 486 310 HOH HOH . M 5 HOH A 87 487 560 HOH HOH . M 5 HOH A 88 488 256 HOH HOH . M 5 HOH A 89 489 306 HOH HOH . M 5 HOH A 90 490 272 HOH HOH . M 5 HOH A 91 491 311 HOH HOH . M 5 HOH A 92 492 259 HOH HOH . M 5 HOH A 93 493 561 HOH HOH . M 5 HOH A 94 494 313 HOH HOH . M 5 HOH A 95 495 288 HOH HOH . M 5 HOH A 96 496 316 HOH HOH . M 5 HOH A 97 497 318 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VML . . . F 4 16.678 20.95 19.974 1 11.46 ? C1 VML 404 B 1 HETATM 2 C C10 VML . . . F 4 9.888 19.233 18.695 1 11.96 ? C10 VML 404 B 1 HETATM 3 C C11 VML . . . F 4 9.577 20.521 19.112 1 16.27 ? C11 VML 404 B 1 HETATM 4 C C13 VML . . . F 4 7.473 20.319 18.187 1 20.56 ? C13 VML 404 B 1 HETATM 5 C C14 VML . . . F 4 7.718 19.025 17.741 1 15.19 ? C14 VML 404 B 1 HETATM 6 C C15 VML . . . F 4 8.964 18.458 18.002 1 12.36 ? C15 VML 404 B 1 HETATM 7 C C16 VML . . . F 4 9.229 17.122 17.465 1 12.03 ? C16 VML 404 B 1 HETATM 8 C C17 VML . . . F 4 8.335 16.064 17.72 1 12.26 ? C17 VML 404 B 1 HETATM 9 C C18 VML . . . F 4 8.571 14.813 17.148 1 14.15 ? C18 VML 404 B 1 HETATM 10 C C19 VML . . . F 4 9.682 14.644 16.329 1 13.4 ? C19 VML 404 B 1 HETATM 11 C C20 VML . . . F 4 10.581 15.687 16.067 1 14.85 ? C20 VML 404 B 1 HETATM 12 C C21 VML . . . F 4 10.356 16.935 16.646 1 10.47 ? C21 VML 404 B 1 HETATM 13 C C22 VML . . . F 4 9.885 13.316 15.717 1 20.83 ? C22 VML 404 B 1 HETATM 14 C C26 VML . . . F 4 13.933 18.116 17.902 1 9.75 ? C26 VML 404 B 1 HETATM 15 C C27 VML . . . F 4 14.05 18.788 16.685 1 9.69 ? C27 VML 404 B 1 HETATM 16 C C28 VML . . . F 4 14.355 18.135 15.485 1 12.12 ? C28 VML 404 B 1 HETATM 17 C C29 VML . . . F 4 14.514 16.743 15.522 1 11.88 ? C29 VML 404 B 1 HETATM 18 C C3 VML . . . F 4 16.319 18.495 20.062 1 14.83 ? C3 VML 404 B 1 HETATM 19 C C30 VML . . . F 4 14.363 16.06 16.739 1 10.96 ? C30 VML 404 B 1 HETATM 20 C C31 VML . . . F 4 14.083 16.728 17.94 1 11.75 ? C31 VML 404 B 1 HETATM 21 C C32 VML . . . F 4 14.539 14.583 16.782 1 21.76 ? C32 VML 404 B 1 HETATM 22 C C4 VML . . . F 4 14.489 20.055 19.399 1 9.54 ? C4 VML 404 B 1 HETATM 23 C C6 VML . . . F 4 13.595 18.855 19.171 1 8.03 ? C6 VML 404 B 1 HETATM 24 C C8 VML . . . F 4 11.2 18.659 19.033 1 10.6 ? C8 VML 404 B 1 HETATM 25 F F23 VML . . . F 4 9.484 12.285 16.463 1 21.81 ? F23 VML 404 B 1 HETATM 26 F F24 VML . . . F 4 9.163 13.165 14.584 1 24 ? F24 VML 404 B 1 HETATM 27 F F25 VML . . . F 4 11.162 13.075 15.405 1 19.91 ? F25 VML 404 B 1 HETATM 28 F F33 VML . . . F 4 14.259 13.954 15.622 1 24.03 ? F33 VML 404 B 1 HETATM 29 F F34 VML . . . F 4 15.821 14.237 17.03 1 23.73 ? F34 VML 404 B 1 HETATM 30 F F35 VML . . . F 4 13.757 14.011 17.72 1 21.55 ? F35 VML 404 B 1 HETATM 31 N N12 VML . . . F 4 8.369 21.096 18.853 1 16.47 ? N12 VML 404 B 1 HETATM 32 N N2 VML . . . F 4 15.791 19.806 19.765 1 11.21 ? N2 VML 404 B 1 HETATM 33 N N7 VML . . . F 4 12.302 19.434 18.837 1 9.9 ? N7 VML 404 B 1 HETATM 34 O O5 VML . . . F 4 14.05 21.192 19.363 1 10.22 ? O5 VML 404 B 1 HETATM 35 O O9 VML . . . F 4 11.187 17.542 19.526 1 10.75 ? O9 VML 404 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #