data_8EAR # _model_server_result.job_id -eCoHb6d58xAdKCmBiGzFw _model_server_result.datetime_utc '2024-10-15 12:24:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ear # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":2802}' # _entry.id 8EAR # _exptl.entry_id 8EAR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 767.132 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _entity.pdbx_number_of_molecules 28 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 T N N ? 6 AA N N ? 6 BA N N ? 6 CA N N ? 6 DA N N ? 6 EA N N ? 6 FA N N ? 6 HA N N ? 6 IA N N ? 6 JA N N ? 6 KA N N ? 6 LA N N ? 6 SA N N ? 6 TA N N ? 6 VA N N ? 6 CB N N ? 6 DB N N ? 6 EB N N ? 6 FB N N ? 6 GB N N ? 6 HB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2528 A CYS 2528 1_555 A SG CYS 2534 A CYS 2534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 2528 B CYS 2528 1_555 B SG CYS 2534 B CYS 2534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 C SG CYS 2528 C CYS 2528 1_555 C SG CYS 2534 C CYS 2534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 D SG CYS 2528 D CYS 2528 1_555 D SG CYS 2534 D CYS 2534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc1 A OD1 ASN 2583 A ASN 2583 1_555 H CA CA . A CA 2804 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc2 A SG CYS 2611 A CYS 2611 1_555 E ZN ZN . A ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 A SG CYS 2614 A CYS 2614 1_555 E ZN ZN . A ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc4 A NE2 HIS 2631 A HIS 2631 1_555 E ZN ZN . A ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc5 B OD1 ASN 2583 B ASN 2583 1_555 W CA CA . B CA 2805 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc6 B SG CYS 2611 B CYS 2611 1_555 S ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc7 B SG CYS 2614 B CYS 2614 1_555 S ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc8 B NE2 HIS 2631 B HIS 2631 1_555 S ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc9 C OD1 ASN 2583 C ASN 2583 1_555 OA CA CA . C CA 2809 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.802 ? metalc ? metalc10 C SG CYS 2611 C CYS 2611 1_555 GA ZN ZN . C ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc11 C SG CYS 2614 C CYS 2614 1_555 GA ZN ZN . C ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc12 C NE2 HIS 2631 C HIS 2631 1_555 GA ZN ZN . C ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc13 D OD1 ASN 2583 D ASN 2583 1_555 YA CA CA . D CA 2805 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc14 D SG CYS 2611 D CYS 2611 1_555 UA ZN ZN . D ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc15 D SG CYS 2614 D CYS 2614 1_555 UA ZN ZN . D ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc16 D NE2 HIS 2631 D HIS 2631 1_555 UA ZN ZN . D ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? # _chem_comp.formula 'C42 H89 N O8 P 1' _chem_comp.formula_weight 767.132 _chem_comp.id PLX _chem_comp.mon_nstd_flag . _chem_comp.name (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8EAR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 2801 5102 ZN ZN . F 3 ATP A 1 2802 5101 ATP ATP . G 4 I3P A 1 2803 603 I3P I3P . H 5 CA A 1 2804 5 CA CA . I 5 CA A 1 2805 33 CA CA . J 5 CA A 1 2806 37 CA CA . K 5 CA A 1 2807 41 CA CA . L 6 PLX A 1 2808 2807 PLX PLX . M 6 PLX A 1 2809 2805 PLX PLX . N 6 PLX A 1 2810 5102 PLX PLX . O 6 PLX A 1 2811 5103 PLX PLX . P 6 PLX A 1 2812 5104 PLX PLX . Q 6 PLX A 1 2813 5105 PLX PLX . R 6 PLX A 1 2814 2806 PLX PLX . S 2 ZN B 1 2801 5102 ZN ZN . T 6 PLX B 1 2802 2806 PLX PLX . U 3 ATP B 1 2803 5101 ATP ATP . V 4 I3P B 1 2804 603 I3P I3P . W 5 CA B 1 2805 6 CA CA . X 5 CA B 1 2806 34 CA CA . Y 5 CA B 1 2807 38 CA CA . Z 5 CA B 1 2808 42 CA CA . AA 6 PLX B 1 2809 2807 PLX PLX . BA 6 PLX B 1 2810 2805 PLX PLX . CA 6 PLX B 1 2811 5102 PLX PLX . DA 6 PLX B 1 2812 5103 PLX PLX . EA 6 PLX B 1 2813 5104 PLX PLX . FA 6 PLX B 1 2814 5105 PLX PLX . GA 2 ZN C 1 2801 5102 ZN ZN . HA 6 PLX C 1 2802 2805 PLX PLX . IA 6 PLX C 1 2803 5102 PLX PLX . JA 6 PLX C 1 2804 5103 PLX PLX . KA 6 PLX C 1 2805 5104 PLX PLX . LA 6 PLX C 1 2806 5105 PLX PLX . MA 3 ATP C 1 2807 5101 ATP ATP . NA 4 I3P C 1 2808 603 I3P I3P . OA 5 CA C 1 2809 7 CA CA . PA 5 CA C 1 2810 35 CA CA . QA 5 CA C 1 2811 39 CA CA . RA 5 CA C 1 2812 43 CA CA . SA 6 PLX C 1 2813 2806 PLX PLX . TA 6 PLX C 1 2814 2807 PLX PLX . UA 2 ZN D 1 2801 5102 ZN ZN . VA 6 PLX D 1 2802 2807 PLX PLX . WA 3 ATP D 1 2803 5101 ATP ATP . XA 4 I3P D 1 2804 603 I3P I3P . YA 5 CA D 1 2805 8 CA CA . ZA 5 CA D 1 2806 36 CA CA . AB 5 CA D 1 2807 40 CA CA . BB 5 CA D 1 2808 44 CA CA . CB 6 PLX D 1 2809 2805 PLX PLX . DB 6 PLX D 1 2810 5102 PLX PLX . EB 6 PLX D 1 2811 5103 PLX PLX . FB 6 PLX D 1 2812 5104 PLX PLX . GB 6 PLX D 1 2813 5105 PLX PLX . HB 6 PLX D 1 2814 2806 PLX PLX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C16 PLX . . . HA 6 191.291 161.455 253.937 1 119.88 ? C16 PLX 2802 C 1 HETATM 2 C C15 PLX . . . HA 6 192.001 162.415 254.918 1 119.88 ? C15 PLX 2802 C 1 HETATM 3 C C14 PLX . . . HA 6 193.528 162.293 254.751 1 119.88 ? C14 PLX 2802 C 1 HETATM 4 C C13 PLX . . . HA 6 194.073 161.129 255.645 1 119.88 ? C13 PLX 2802 C 1 HETATM 5 C C12 PLX . . . HA 6 194.886 161.705 256.825 1 119.88 ? C12 PLX 2802 C 1 HETATM 6 C C11 PLX . . . HA 6 194.008 161.741 258.116 1 119.88 ? C11 PLX 2802 C 1 HETATM 7 C C10 PLX . . . HA 6 194.864 161.324 259.34 1 119.88 ? C10 PLX 2802 C 1 HETATM 8 C C9 PLX . . . HA 6 193.931 160.853 260.489 1 119.88 ? C9 PLX 2802 C 1 HETATM 9 C C8 PLX . . . HA 6 194.452 161.406 261.85 1 119.88 ? C8 PLX 2802 C 1 HETATM 10 C C7 PLX . . . HA 6 195.849 160.773 262.186 1 119.88 ? C7 PLX 2802 C 1 HETATM 11 C C6 PLX . . . HA 6 196.41 161.412 263.477 1 119.88 ? C6 PLX 2802 C 1 HETATM 12 O O7 PLX . . . HA 6 195.433 162.188 264.072 1 119.88 ? O7 PLX 2802 C 1 HETATM 13 O O6 PLX . . . HA 6 196.832 160.411 264.373 1 119.88 ? O6 PLX 2802 C 1 HETATM 14 C C4 PLX . . . HA 6 198.217 160.268 264.441 1 119.88 ? C4 PLX 2802 C 1 HETATM 15 C C3 PLX . . . HA 6 198.738 160.829 265.778 1 119.88 ? C3 PLX 2802 C 1 HETATM 16 O O4 PLX . . . HA 6 199.17 159.759 266.603 1 119.88 ? O4 PLX 2802 C 1 HETATM 17 P P1 PLX . . . HA 6 199.45 160.057 268.235 1 119.88 ? P1 PLX 2802 C 1 HETATM 18 O O1 PLX . . . HA 6 199.649 161.693 268.497 1 119.88 ? O1 PLX 2802 C 1 HETATM 19 C C2 PLX . . . HA 6 200.412 162.099 269.62 1 119.88 ? C2 PLX 2802 C 1 HETATM 20 C C1 PLX . . . HA 6 201.407 163.216 269.207 1 119.88 ? C1 PLX 2802 C 1 HETATM 21 N N1 PLX . . . HA 6 202.615 163.171 270.067 1 119.88 ? N1 PLX 2802 C 1 HETATM 22 C C1C PLX . . . HA 6 203.249 161.868 269.969 1 119.88 ? C1C PLX 2802 C 1 HETATM 23 C C1B PLX . . . HA 6 203.551 164.194 269.629 1 119.88 ? C1B PLX 2802 C 1 HETATM 24 C C1A PLX . . . HA 6 202.248 163.419 271.433 1 119.88 ? C1A PLX 2802 C 1 HETATM 25 O O2 PLX . . . HA 6 198.269 159.57 269.039 1 119.88 ? O2 PLX 2802 C 1 HETATM 26 C C5 PLX . . . HA 6 198.58 158.786 264.335 1 119.88 ? C5 PLX 2802 C 1 HETATM 27 O O8 PLX . . . HA 6 199.957 158.665 263.999 1 119.88 ? O8 PLX 2802 C 1 HETATM 28 C C24 PLX . . . HA 6 200.294 157.44 263.365 1 119.88 ? C24 PLX 2802 C 1 HETATM 29 O O9 PLX . . . HA 6 201.666 157.368 263.193 1 119.88 ? O9 PLX 2802 C 1 HETATM 30 C C25 PLX . . . HA 6 199.601 157.361 262.004 1 119.88 ? C25 PLX 2802 C 1 HETATM 31 C C26 PLX . . . HA 6 198.865 155.998 261.878 1 119.88 ? C26 PLX 2802 C 1 HETATM 32 C C27 PLX . . . HA 6 197.343 156.228 261.696 1 119.88 ? C27 PLX 2802 C 1 HETATM 33 C C28 PLX . . . HA 6 197.096 157.357 260.68 1 119.88 ? C28 PLX 2802 C 1 HETATM 34 C C29 PLX . . . HA 6 196.736 156.739 259.301 1 119.88 ? C29 PLX 2802 C 1 HETATM 35 C C30 PLX . . . HA 6 195.208 156.509 259.215 1 119.88 ? C30 PLX 2802 C 1 HETATM 36 C C31 PLX . . . HA 6 194.695 156.997 257.839 1 119.88 ? C31 PLX 2802 C 1 HETATM 37 C C32 PLX . . . HA 6 195.492 156.278 256.699 1 119.88 ? C32 PLX 2802 C 1 HETATM 38 C C33 PLX . . . HA 6 194.514 155.848 255.561 1 119.88 ? C33 PLX 2802 C 1 HETATM 39 C C34 PLX . . . HA 6 194.216 157.07 254.645 1 119.88 ? C34 PLX 2802 C 1 HETATM 40 C C35 PLX . . . HA 6 192.864 156.851 253.875 1 119.88 ? C35 PLX 2802 C 1 HETATM 41 C C36 PLX . . . HA 6 191.771 156.363 254.851 1 119.88 ? C36 PLX 2802 C 1 HETATM 42 C C37 PLX . . . HA 6 190.408 156.271 254.094 1 119.88 ? C37 PLX 2802 C 1 HETATM 43 C C38 PLX . . . HA 6 189.588 155.069 254.633 1 119.88 ? C38 PLX 2802 C 1 HETATM 44 C C39 PLX . . . HA 6 188.253 154.992 253.901 1 119.88 ? C39 PLX 2802 C 1 HETATM 45 O O3 PLX . . . HA 6 200.69 159.323 268.685 1 119.88 ? O3 PLX 2802 C 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 131 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 45 #