data_8EAR # _model_server_result.job_id b82QC6_HOVXIUrv-d9-qhQ _model_server_result.datetime_utc '2024-10-15 12:23:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ear # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":2808}' # _entry.id 8EAR # _exptl.entry_id 8EAR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 420.096 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 V N N ? 4 NA N N ? 4 XA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2528 A CYS 2528 1_555 A SG CYS 2534 A CYS 2534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 2528 B CYS 2528 1_555 B SG CYS 2534 B CYS 2534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 C SG CYS 2528 C CYS 2528 1_555 C SG CYS 2534 C CYS 2534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 D SG CYS 2528 D CYS 2528 1_555 D SG CYS 2534 D CYS 2534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc1 A OD1 ASN 2583 A ASN 2583 1_555 H CA CA . A CA 2804 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc2 A SG CYS 2611 A CYS 2611 1_555 E ZN ZN . A ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 A SG CYS 2614 A CYS 2614 1_555 E ZN ZN . A ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc4 A NE2 HIS 2631 A HIS 2631 1_555 E ZN ZN . A ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc5 B OD1 ASN 2583 B ASN 2583 1_555 W CA CA . B CA 2805 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc6 B SG CYS 2611 B CYS 2611 1_555 S ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc7 B SG CYS 2614 B CYS 2614 1_555 S ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc8 B NE2 HIS 2631 B HIS 2631 1_555 S ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc9 C OD1 ASN 2583 C ASN 2583 1_555 OA CA CA . C CA 2809 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.802 ? metalc ? metalc10 C SG CYS 2611 C CYS 2611 1_555 GA ZN ZN . C ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc11 C SG CYS 2614 C CYS 2614 1_555 GA ZN ZN . C ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc12 C NE2 HIS 2631 C HIS 2631 1_555 GA ZN ZN . C ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc13 D OD1 ASN 2583 D ASN 2583 1_555 YA CA CA . D CA 2805 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc14 D SG CYS 2611 D CYS 2611 1_555 UA ZN ZN . D ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc15 D SG CYS 2614 D CYS 2614 1_555 UA ZN ZN . D ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc16 D NE2 HIS 2631 D HIS 2631 1_555 UA ZN ZN . D ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? # _chem_comp.formula 'C6 H15 O15 P3' _chem_comp.formula_weight 420.096 _chem_comp.id I3P _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8EAR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 2801 5102 ZN ZN . F 3 ATP A 1 2802 5101 ATP ATP . G 4 I3P A 1 2803 603 I3P I3P . H 5 CA A 1 2804 5 CA CA . I 5 CA A 1 2805 33 CA CA . J 5 CA A 1 2806 37 CA CA . K 5 CA A 1 2807 41 CA CA . L 6 PLX A 1 2808 2807 PLX PLX . M 6 PLX A 1 2809 2805 PLX PLX . N 6 PLX A 1 2810 5102 PLX PLX . O 6 PLX A 1 2811 5103 PLX PLX . P 6 PLX A 1 2812 5104 PLX PLX . Q 6 PLX A 1 2813 5105 PLX PLX . R 6 PLX A 1 2814 2806 PLX PLX . S 2 ZN B 1 2801 5102 ZN ZN . T 6 PLX B 1 2802 2806 PLX PLX . U 3 ATP B 1 2803 5101 ATP ATP . V 4 I3P B 1 2804 603 I3P I3P . W 5 CA B 1 2805 6 CA CA . X 5 CA B 1 2806 34 CA CA . Y 5 CA B 1 2807 38 CA CA . Z 5 CA B 1 2808 42 CA CA . AA 6 PLX B 1 2809 2807 PLX PLX . BA 6 PLX B 1 2810 2805 PLX PLX . CA 6 PLX B 1 2811 5102 PLX PLX . DA 6 PLX B 1 2812 5103 PLX PLX . EA 6 PLX B 1 2813 5104 PLX PLX . FA 6 PLX B 1 2814 5105 PLX PLX . GA 2 ZN C 1 2801 5102 ZN ZN . HA 6 PLX C 1 2802 2805 PLX PLX . IA 6 PLX C 1 2803 5102 PLX PLX . JA 6 PLX C 1 2804 5103 PLX PLX . KA 6 PLX C 1 2805 5104 PLX PLX . LA 6 PLX C 1 2806 5105 PLX PLX . MA 3 ATP C 1 2807 5101 ATP ATP . NA 4 I3P C 1 2808 603 I3P I3P . OA 5 CA C 1 2809 7 CA CA . PA 5 CA C 1 2810 35 CA CA . QA 5 CA C 1 2811 39 CA CA . RA 5 CA C 1 2812 43 CA CA . SA 6 PLX C 1 2813 2806 PLX PLX . TA 6 PLX C 1 2814 2807 PLX PLX . UA 2 ZN D 1 2801 5102 ZN ZN . VA 6 PLX D 1 2802 2807 PLX PLX . WA 3 ATP D 1 2803 5101 ATP ATP . XA 4 I3P D 1 2804 603 I3P I3P . YA 5 CA D 1 2805 8 CA CA . ZA 5 CA D 1 2806 36 CA CA . AB 5 CA D 1 2807 40 CA CA . BB 5 CA D 1 2808 44 CA CA . CB 6 PLX D 1 2809 2805 PLX PLX . DB 6 PLX D 1 2810 5102 PLX PLX . EB 6 PLX D 1 2811 5103 PLX PLX . FB 6 PLX D 1 2812 5104 PLX PLX . GB 6 PLX D 1 2813 5105 PLX PLX . HB 6 PLX D 1 2814 2806 PLX PLX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I3P . . . NA 4 196.933 119.226 134.638 1 142.72 ? C1 I3P 2808 C 1 HETATM 2 C C2 I3P . . . NA 4 195.899 119.182 133.508 1 142.72 ? C2 I3P 2808 C 1 HETATM 3 C C3 I3P . . . NA 4 195.406 120.577 133.117 1 142.72 ? C3 I3P 2808 C 1 HETATM 4 C C4 I3P . . . NA 4 196.571 121.505 132.76 1 142.72 ? C4 I3P 2808 C 1 HETATM 5 C C5 I3P . . . NA 4 197.606 121.584 133.886 1 142.72 ? C5 I3P 2808 C 1 HETATM 6 C C6 I3P . . . NA 4 198.086 120.201 134.346 1 142.72 ? C6 I3P 2808 C 1 HETATM 7 O O1 I3P . . . NA 4 197.459 117.932 134.794 1 142.72 ? O1 I3P 2808 C 1 HETATM 8 O O2 I3P . . . NA 4 196.49 118.582 132.381 1 142.72 ? O2 I3P 2808 C 1 HETATM 9 O O3 I3P . . . NA 4 194.566 120.461 131.996 1 142.72 ? O3 I3P 2808 C 1 HETATM 10 O O4 I3P . . . NA 4 196.064 122.795 132.528 1 142.72 ? O4 I3P 2808 C 1 HETATM 11 O O5 I3P . . . NA 4 198.713 122.313 133.415 1 142.72 ? O5 I3P 2808 C 1 HETATM 12 O O6 I3P . . . NA 4 198.842 120.371 135.519 1 142.72 ? O6 I3P 2808 C 1 HETATM 13 P P1 I3P . . . NA 4 198.015 117.475 136.275 1 142.72 ? P1 I3P 2808 C 1 HETATM 14 O O11 I3P . . . NA 4 199.487 117.787 136.369 1 142.72 ? O11 I3P 2808 C 1 HETATM 15 O O12 I3P . . . NA 4 197.27 118.232 137.348 1 142.72 ? O12 I3P 2808 C 1 HETATM 16 O O13 I3P . . . NA 4 197.804 115.992 136.459 1 142.72 ? O13 I3P 2808 C 1 HETATM 17 P P4 I3P . . . NA 4 195.758 123.251 130.976 1 142.72 ? P4 I3P 2808 C 1 HETATM 18 O O41 I3P . . . NA 4 197.014 123.114 130.153 1 142.72 ? O41 I3P 2808 C 1 HETATM 19 O O42 I3P . . . NA 4 194.676 122.373 130.396 1 142.72 ? O42 I3P 2808 C 1 HETATM 20 O O43 I3P . . . NA 4 195.305 124.69 130.957 1 142.72 ? O43 I3P 2808 C 1 HETATM 21 P P5 I3P . . . NA 4 199.473 123.349 134.445 1 142.72 ? P5 I3P 2808 C 1 HETATM 22 O O51 I3P . . . NA 4 200.597 124.041 133.714 1 142.72 ? O51 I3P 2808 C 1 HETATM 23 O O52 I3P . . . NA 4 198.49 124.375 134.95 1 142.72 ? O52 I3P 2808 C 1 HETATM 24 O O53 I3P . . . NA 4 200.03 122.577 135.615 1 142.72 ? O53 I3P 2808 C 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 425 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #