data_8EAR
#
_model_server_result.job_id            -FaWG4Hbn1azx6xyxunynA 
_model_server_result.datetime_utc      '2024-10-15 12:17:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ear 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CB","auth_seq_id":2809}' 
#
_entry.id    8EAR 
#
_exptl.entry_id    8EAR 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              767.132 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_entity.pdbx_number_of_molecules    28 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 L N N 
? 6 M N N 
? 6 N N N 
? 6 O N N 
? 6 P N N 
? 6 Q N N 
? 6 R N N 
? 6 T N N 
? 6 AA N N 
? 6 BA N N 
? 6 CA N N 
? 6 DA N N 
? 6 EA N N 
? 6 FA N N 
? 6 HA N N 
? 6 IA N N 
? 6 JA N N 
? 6 KA N N 
? 6 LA N N 
? 6 SA N N 
? 6 TA N N 
? 6 VA N N 
? 6 CB N N 
? 6 DB N N 
? 6 EB N N 
? 6 FB N N 
? 6 GB N N 
? 6 HB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2528 A CYS 2528 1_555 A SG CYS 2534 A CYS 2534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 B SG CYS 2528 B CYS 2528 1_555 B SG CYS 2534 B CYS 2534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 C SG CYS 2528 C CYS 2528 1_555 C SG CYS 2534 C CYS 2534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf4 D SG CYS 2528 D CYS 2528 1_555 D SG CYS 2534 D CYS 2534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc1 A OD1 ASN 2583 A ASN 2583 1_555 H CA CA . A CA 2804 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.804 ? 
metalc ? metalc2 A SG CYS 2611 A CYS 2611 1_555 E ZN ZN . A ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc3 A SG CYS 2614 A CYS 2614 1_555 E ZN ZN . A ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc4 A NE2 HIS 2631 A HIS 2631 1_555 E ZN ZN . A ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc5 B OD1 ASN 2583 B ASN 2583 1_555 W CA CA . B CA 2805 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.805 ? 
metalc ? metalc6 B SG CYS 2611 B CYS 2611 1_555 S ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc7 B SG CYS 2614 B CYS 2614 1_555 S ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc8 B NE2 HIS 2631 B HIS 2631 1_555 S ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc9 C OD1 ASN 2583 C ASN 2583 1_555 OA CA CA . C CA 2809 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.802 ? 
metalc ? metalc10 C SG CYS 2611 C CYS 2611 1_555 GA ZN ZN . C ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc11 C SG CYS 2614 C CYS 2614 1_555 GA ZN ZN . C ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc12 C NE2 HIS 2631 C HIS 2631 1_555 GA ZN ZN . C ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc13 D OD1 ASN 2583 D ASN 2583 1_555 YA CA CA . D CA 2805 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.808 ? 
metalc ? metalc14 D SG CYS 2611 D CYS 2611 1_555 UA ZN ZN . D ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc15 D SG CYS 2614 D CYS 2614 1_555 UA ZN ZN . D ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc16 D NE2 HIS 2631 D HIS 2631 1_555 UA ZN ZN . D ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
#
_chem_comp.formula           'C42 H89 N O8 P 1' 
_chem_comp.formula_weight    767.132 
_chem_comp.id                PLX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8EAR 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 2801 5102 ZN ZN . 
F 3 ATP A 1 2802 5101 ATP ATP . 
G 4 I3P A 1 2803 603 I3P I3P . 
H 5 CA A 1 2804 5 CA CA . 
I 5 CA A 1 2805 33 CA CA . 
J 5 CA A 1 2806 37 CA CA . 
K 5 CA A 1 2807 41 CA CA . 
L 6 PLX A 1 2808 2807 PLX PLX . 
M 6 PLX A 1 2809 2805 PLX PLX . 
N 6 PLX A 1 2810 5102 PLX PLX . 
O 6 PLX A 1 2811 5103 PLX PLX . 
P 6 PLX A 1 2812 5104 PLX PLX . 
Q 6 PLX A 1 2813 5105 PLX PLX . 
R 6 PLX A 1 2814 2806 PLX PLX . 
S 2 ZN B 1 2801 5102 ZN ZN . 
T 6 PLX B 1 2802 2806 PLX PLX . 
U 3 ATP B 1 2803 5101 ATP ATP . 
V 4 I3P B 1 2804 603 I3P I3P . 
W 5 CA B 1 2805 6 CA CA . 
X 5 CA B 1 2806 34 CA CA . 
Y 5 CA B 1 2807 38 CA CA . 
Z 5 CA B 1 2808 42 CA CA . 
AA 6 PLX B 1 2809 2807 PLX PLX . 
BA 6 PLX B 1 2810 2805 PLX PLX . 
CA 6 PLX B 1 2811 5102 PLX PLX . 
DA 6 PLX B 1 2812 5103 PLX PLX . 
EA 6 PLX B 1 2813 5104 PLX PLX . 
FA 6 PLX B 1 2814 5105 PLX PLX . 
GA 2 ZN C 1 2801 5102 ZN ZN . 
HA 6 PLX C 1 2802 2805 PLX PLX . 
IA 6 PLX C 1 2803 5102 PLX PLX . 
JA 6 PLX C 1 2804 5103 PLX PLX . 
KA 6 PLX C 1 2805 5104 PLX PLX . 
LA 6 PLX C 1 2806 5105 PLX PLX . 
MA 3 ATP C 1 2807 5101 ATP ATP . 
NA 4 I3P C 1 2808 603 I3P I3P . 
OA 5 CA C 1 2809 7 CA CA . 
PA 5 CA C 1 2810 35 CA CA . 
QA 5 CA C 1 2811 39 CA CA . 
RA 5 CA C 1 2812 43 CA CA . 
SA 6 PLX C 1 2813 2806 PLX PLX . 
TA 6 PLX C 1 2814 2807 PLX PLX . 
UA 2 ZN D 1 2801 5102 ZN ZN . 
VA 6 PLX D 1 2802 2807 PLX PLX . 
WA 3 ATP D 1 2803 5101 ATP ATP . 
XA 4 I3P D 1 2804 603 I3P I3P . 
YA 5 CA D 1 2805 8 CA CA . 
ZA 5 CA D 1 2806 36 CA CA . 
AB 5 CA D 1 2807 40 CA CA . 
BB 5 CA D 1 2808 44 CA CA . 
CB 6 PLX D 1 2809 2805 PLX PLX . 
DB 6 PLX D 1 2810 5102 PLX PLX . 
EB 6 PLX D 1 2811 5103 PLX PLX . 
FB 6 PLX D 1 2812 5104 PLX PLX . 
GB 6 PLX D 1 2813 5105 PLX PLX . 
HB 6 PLX D 1 2814 2806 PLX PLX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C16 PLX . . . CB 6 198.078 191.299 253.931 1 120.46 ? C16 PLX 2809 D 1 
HETATM 2 C C15 PLX . . . CB 6 197.119 192.009 254.912 1 120.46 ? C15 PLX 2809 D 1 
HETATM 3 C C14 PLX . . . CB 6 197.24 193.536 254.745 1 120.46 ? C14 PLX 2809 D 1 
HETATM 4 C C13 PLX . . . CB 6 198.405 194.08 255.638 1 120.46 ? C13 PLX 2809 D 1 
HETATM 5 C C12 PLX . . . CB 6 197.828 194.894 256.818 1 120.46 ? C12 PLX 2809 D 1 
HETATM 6 C C11 PLX . . . CB 6 197.793 194.016 258.11 1 120.46 ? C11 PLX 2809 D 1 
HETATM 7 C C10 PLX . . . CB 6 198.209 194.872 259.334 1 120.46 ? C10 PLX 2809 D 1 
HETATM 8 C C9 PLX . . . CB 6 198.68 193.938 260.483 1 120.46 ? C9 PLX 2809 D 1 
HETATM 9 C C8 PLX . . . CB 6 198.128 194.459 261.844 1 120.46 ? C8 PLX 2809 D 1 
HETATM 10 C C7 PLX . . . CB 6 198.76 195.857 262.179 1 120.46 ? C7 PLX 2809 D 1 
HETATM 11 C C6 PLX . . . CB 6 198.121 196.418 263.471 1 120.46 ? C6 PLX 2809 D 1 
HETATM 12 O O7 PLX . . . CB 6 197.345 195.44 264.065 1 120.46 ? O7 PLX 2809 D 1 
HETATM 13 O O6 PLX . . . CB 6 199.123 196.839 264.367 1 120.46 ? O6 PLX 2809 D 1 
HETATM 14 C C4 PLX . . . CB 6 199.265 198.224 264.434 1 120.46 ? C4 PLX 2809 D 1 
HETATM 15 C C3 PLX . . . CB 6 198.704 198.746 265.772 1 120.46 ? C3 PLX 2809 D 1 
HETATM 16 O O4 PLX . . . CB 6 199.774 199.177 266.596 1 120.46 ? O4 PLX 2809 D 1 
HETATM 17 P P1 PLX . . . CB 6 199.477 199.457 268.228 1 120.46 ? P1 PLX 2809 D 1 
HETATM 18 O O1 PLX . . . CB 6 197.84 199.657 268.491 1 120.46 ? O1 PLX 2809 D 1 
HETATM 19 C C2 PLX . . . CB 6 197.435 200.419 269.614 1 120.46 ? C2 PLX 2809 D 1 
HETATM 20 C C1 PLX . . . CB 6 196.318 201.414 269.201 1 120.46 ? C1 PLX 2809 D 1 
HETATM 21 N N1 PLX . . . CB 6 196.362 202.623 270.061 1 120.46 ? N1 PLX 2809 D 1 
HETATM 22 C C1C PLX . . . CB 6 197.665 203.256 269.963 1 120.46 ? C1C PLX 2809 D 1 
HETATM 23 C C1B PLX . . . CB 6 195.339 203.559 269.623 1 120.46 ? C1B PLX 2809 D 1 
HETATM 24 C C1A PLX . . . CB 6 196.115 202.255 271.427 1 120.46 ? C1A PLX 2809 D 1 
HETATM 25 O O2 PLX . . . CB 6 199.963 198.277 269.032 1 120.46 ? O2 PLX 2809 D 1 
HETATM 26 C C5 PLX . . . CB 6 200.748 198.588 264.328 1 120.46 ? C5 PLX 2809 D 1 
HETATM 27 O O8 PLX . . . CB 6 200.868 199.965 263.992 1 120.46 ? O8 PLX 2809 D 1 
HETATM 28 C C24 PLX . . . CB 6 202.093 200.301 263.358 1 120.46 ? C24 PLX 2809 D 1 
HETATM 29 O O9 PLX . . . CB 6 202.165 201.674 263.187 1 120.46 ? O9 PLX 2809 D 1 
HETATM 30 C C25 PLX . . . CB 6 202.172 199.609 261.998 1 120.46 ? C25 PLX 2809 D 1 
HETATM 31 C C26 PLX . . . CB 6 203.535 198.873 261.871 1 120.46 ? C26 PLX 2809 D 1 
HETATM 32 C C27 PLX . . . CB 6 203.305 197.351 261.69 1 120.46 ? C27 PLX 2809 D 1 
HETATM 33 C C28 PLX . . . CB 6 202.176 197.103 260.674 1 120.46 ? C28 PLX 2809 D 1 
HETATM 34 C C29 PLX . . . CB 6 202.794 196.744 259.295 1 120.46 ? C29 PLX 2809 D 1 
HETATM 35 C C30 PLX . . . CB 6 203.025 195.216 259.208 1 120.46 ? C30 PLX 2809 D 1 
HETATM 36 C C31 PLX . . . CB 6 202.536 194.702 257.833 1 120.46 ? C31 PLX 2809 D 1 
HETATM 37 C C32 PLX . . . CB 6 203.256 195.5 256.693 1 120.46 ? C32 PLX 2809 D 1 
HETATM 38 C C33 PLX . . . CB 6 203.685 194.522 255.555 1 120.46 ? C33 PLX 2809 D 1 
HETATM 39 C C34 PLX . . . CB 6 202.463 194.224 254.638 1 120.46 ? C34 PLX 2809 D 1 
HETATM 40 C C35 PLX . . . CB 6 202.682 192.872 253.869 1 120.46 ? C35 PLX 2809 D 1 
HETATM 41 C C36 PLX . . . CB 6 203.17 191.778 254.844 1 120.46 ? C36 PLX 2809 D 1 
HETATM 42 C C37 PLX . . . CB 6 203.262 190.416 254.087 1 120.46 ? C37 PLX 2809 D 1 
HETATM 43 C C38 PLX . . . CB 6 204.464 189.596 254.627 1 120.46 ? C38 PLX 2809 D 1 
HETATM 44 C C39 PLX . . . CB 6 204.541 188.261 253.895 1 120.46 ? C39 PLX 2809 D 1 
HETATM 45 O O3 PLX . . . CB 6 200.21 200.698 268.679 1 120.46 ? O3 PLX 2809 D 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    136 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           45 
#