data_8EAR # _model_server_result.job_id s2ntP1yRY53WH75xeJjjPg _model_server_result.datetime_utc '2024-10-15 12:23:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ear # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DB","auth_seq_id":2810}' # _entry.id 8EAR # _exptl.entry_id 8EAR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 767.132 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _entity.pdbx_number_of_molecules 28 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 T N N ? 6 AA N N ? 6 BA N N ? 6 CA N N ? 6 DA N N ? 6 EA N N ? 6 FA N N ? 6 HA N N ? 6 IA N N ? 6 JA N N ? 6 KA N N ? 6 LA N N ? 6 SA N N ? 6 TA N N ? 6 VA N N ? 6 CB N N ? 6 DB N N ? 6 EB N N ? 6 FB N N ? 6 GB N N ? 6 HB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2528 A CYS 2528 1_555 A SG CYS 2534 A CYS 2534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 2528 B CYS 2528 1_555 B SG CYS 2534 B CYS 2534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 C SG CYS 2528 C CYS 2528 1_555 C SG CYS 2534 C CYS 2534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 D SG CYS 2528 D CYS 2528 1_555 D SG CYS 2534 D CYS 2534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc1 A OD1 ASN 2583 A ASN 2583 1_555 H CA CA . A CA 2804 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc2 A SG CYS 2611 A CYS 2611 1_555 E ZN ZN . A ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 A SG CYS 2614 A CYS 2614 1_555 E ZN ZN . A ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc4 A NE2 HIS 2631 A HIS 2631 1_555 E ZN ZN . A ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc5 B OD1 ASN 2583 B ASN 2583 1_555 W CA CA . B CA 2805 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc6 B SG CYS 2611 B CYS 2611 1_555 S ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc7 B SG CYS 2614 B CYS 2614 1_555 S ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc8 B NE2 HIS 2631 B HIS 2631 1_555 S ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc9 C OD1 ASN 2583 C ASN 2583 1_555 OA CA CA . C CA 2809 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.802 ? metalc ? metalc10 C SG CYS 2611 C CYS 2611 1_555 GA ZN ZN . C ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc11 C SG CYS 2614 C CYS 2614 1_555 GA ZN ZN . C ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc12 C NE2 HIS 2631 C HIS 2631 1_555 GA ZN ZN . C ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc13 D OD1 ASN 2583 D ASN 2583 1_555 YA CA CA . D CA 2805 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc14 D SG CYS 2611 D CYS 2611 1_555 UA ZN ZN . D ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc15 D SG CYS 2614 D CYS 2614 1_555 UA ZN ZN . D ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc16 D NE2 HIS 2631 D HIS 2631 1_555 UA ZN ZN . D ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? # _chem_comp.formula 'C42 H89 N O8 P 1' _chem_comp.formula_weight 767.132 _chem_comp.id PLX _chem_comp.mon_nstd_flag . _chem_comp.name (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8EAR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 2801 5102 ZN ZN . F 3 ATP A 1 2802 5101 ATP ATP . G 4 I3P A 1 2803 603 I3P I3P . H 5 CA A 1 2804 5 CA CA . I 5 CA A 1 2805 33 CA CA . J 5 CA A 1 2806 37 CA CA . K 5 CA A 1 2807 41 CA CA . L 6 PLX A 1 2808 2807 PLX PLX . M 6 PLX A 1 2809 2805 PLX PLX . N 6 PLX A 1 2810 5102 PLX PLX . O 6 PLX A 1 2811 5103 PLX PLX . P 6 PLX A 1 2812 5104 PLX PLX . Q 6 PLX A 1 2813 5105 PLX PLX . R 6 PLX A 1 2814 2806 PLX PLX . S 2 ZN B 1 2801 5102 ZN ZN . T 6 PLX B 1 2802 2806 PLX PLX . U 3 ATP B 1 2803 5101 ATP ATP . V 4 I3P B 1 2804 603 I3P I3P . W 5 CA B 1 2805 6 CA CA . X 5 CA B 1 2806 34 CA CA . Y 5 CA B 1 2807 38 CA CA . Z 5 CA B 1 2808 42 CA CA . AA 6 PLX B 1 2809 2807 PLX PLX . BA 6 PLX B 1 2810 2805 PLX PLX . CA 6 PLX B 1 2811 5102 PLX PLX . DA 6 PLX B 1 2812 5103 PLX PLX . EA 6 PLX B 1 2813 5104 PLX PLX . FA 6 PLX B 1 2814 5105 PLX PLX . GA 2 ZN C 1 2801 5102 ZN ZN . HA 6 PLX C 1 2802 2805 PLX PLX . IA 6 PLX C 1 2803 5102 PLX PLX . JA 6 PLX C 1 2804 5103 PLX PLX . KA 6 PLX C 1 2805 5104 PLX PLX . LA 6 PLX C 1 2806 5105 PLX PLX . MA 3 ATP C 1 2807 5101 ATP ATP . NA 4 I3P C 1 2808 603 I3P I3P . OA 5 CA C 1 2809 7 CA CA . PA 5 CA C 1 2810 35 CA CA . QA 5 CA C 1 2811 39 CA CA . RA 5 CA C 1 2812 43 CA CA . SA 6 PLX C 1 2813 2806 PLX PLX . TA 6 PLX C 1 2814 2807 PLX PLX . UA 2 ZN D 1 2801 5102 ZN ZN . VA 6 PLX D 1 2802 2807 PLX PLX . WA 3 ATP D 1 2803 5101 ATP ATP . XA 4 I3P D 1 2804 603 I3P I3P . YA 5 CA D 1 2805 8 CA CA . ZA 5 CA D 1 2806 36 CA CA . AB 5 CA D 1 2807 40 CA CA . BB 5 CA D 1 2808 44 CA CA . CB 6 PLX D 1 2809 2805 PLX PLX . DB 6 PLX D 1 2810 5102 PLX PLX . EB 6 PLX D 1 2811 5103 PLX PLX . FB 6 PLX D 1 2812 5104 PLX PLX . GB 6 PLX D 1 2813 5105 PLX PLX . HB 6 PLX D 1 2814 2806 PLX PLX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 PLX . . . DB 6 209.169 176.028 254.745 1 119.67 ? C13 PLX 2810 D 1 HETATM 2 C C12 PLX . . . DB 6 210.583 176.549 255.076 1 119.67 ? C12 PLX 2810 D 1 HETATM 3 C C11 PLX . . . DB 6 210.597 177.13 256.526 1 119.67 ? C11 PLX 2810 D 1 HETATM 4 C C10 PLX . . . DB 6 212.051 177.177 257.058 1 119.67 ? C10 PLX 2810 D 1 HETATM 5 C C9 PLX . . . DB 6 212.643 175.742 257.073 1 119.67 ? C9 PLX 2810 D 1 HETATM 6 C C8 PLX . . . DB 6 212.939 175.316 258.542 1 119.67 ? C8 PLX 2810 D 1 HETATM 7 C C7 PLX . . . DB 6 214.103 176.183 259.136 1 119.67 ? C7 PLX 2810 D 1 HETATM 8 C C6 PLX . . . DB 6 214.54 175.556 260.48 1 119.67 ? C6 PLX 2810 D 1 HETATM 9 O O7 PLX . . . DB 6 214.953 174.255 260.26 1 119.67 ? O7 PLX 2810 D 1 HETATM 10 O O6 PLX . . . DB 6 215.592 176.299 261.047 1 119.67 ? O6 PLX 2810 D 1 HETATM 11 C C4 PLX . . . DB 6 215.163 177.22 262.002 1 119.67 ? C4 PLX 2810 D 1 HETATM 12 C C3 PLX . . . DB 6 215.638 176.786 263.404 1 119.67 ? C3 PLX 2810 D 1 HETATM 13 O O4 PLX . . . DB 6 217.05 176.655 263.407 1 119.67 ? O4 PLX 2810 D 1 HETATM 14 P P1 PLX . . . DB 6 217.706 175.197 263.93 1 119.67 ? P1 PLX 2810 D 1 HETATM 15 O O1 PLX . . . DB 6 219.149 175.45 264.731 1 119.67 ? O1 PLX 2810 D 1 HETATM 16 C C2 PLX . . . DB 6 219.135 175.965 266.051 1 119.67 ? C2 PLX 2810 D 1 HETATM 17 C C1 PLX . . . DB 6 220.072 175.092 266.932 1 119.67 ? C1 PLX 2810 D 1 HETATM 18 N N1 PLX . . . DB 6 220.685 175.896 268.017 1 119.67 ? N1 PLX 2810 D 1 HETATM 19 C C1C PLX . . . DB 6 219.646 176.418 268.886 1 119.67 ? C1C PLX 2810 D 1 HETATM 20 C C1B PLX . . . DB 6 221.58 175.049 268.791 1 119.67 ? C1B PLX 2810 D 1 HETATM 21 C C1A PLX . . . DB 6 221.436 176.986 267.458 1 119.67 ? C1A PLX 2810 D 1 HETATM 22 O O2 PLX . . . DB 6 216.73 174.505 264.851 1 119.67 ? O2 PLX 2810 D 1 HETATM 23 C C5 PLX . . . DB 6 215.747 178.596 261.677 1 119.67 ? C5 PLX 2810 D 1 HETATM 24 O O8 PLX . . . DB 6 215.199 179.558 262.569 1 119.67 ? O8 PLX 2810 D 1 HETATM 25 C C24 PLX . . . DB 6 215.76 180.851 262.424 1 119.67 ? C24 PLX 2810 D 1 HETATM 26 O O9 PLX . . . DB 6 215.78 181.483 263.656 1 119.67 ? O9 PLX 2810 D 1 HETATM 27 C C25 PLX . . . DB 6 214.925 181.668 261.437 1 119.67 ? C25 PLX 2810 D 1 HETATM 28 C C26 PLX . . . DB 6 215.688 181.794 260.088 1 119.67 ? C26 PLX 2810 D 1 HETATM 29 C C27 PLX . . . DB 6 214.682 181.99 258.927 1 119.67 ? C27 PLX 2810 D 1 HETATM 30 C C28 PLX . . . DB 6 213.776 180.753 258.799 1 119.67 ? C28 PLX 2810 D 1 HETATM 31 C C29 PLX . . . DB 6 212.446 181.162 258.106 1 119.67 ? C29 PLX 2810 D 1 HETATM 32 C C30 PLX . . . DB 6 211.249 180.692 258.968 1 119.67 ? C30 PLX 2810 D 1 HETATM 33 C C31 PLX . . . DB 6 210.021 180.422 258.067 1 119.67 ? C31 PLX 2810 D 1 HETATM 34 C C32 PLX . . . DB 6 209.261 181.764 257.793 1 119.67 ? C32 PLX 2810 D 1 HETATM 35 C C33 PLX . . . DB 6 208.775 181.797 256.311 1 119.67 ? C33 PLX 2810 D 1 HETATM 36 C C34 PLX . . . DB 6 208.001 183.12 256.047 1 119.67 ? C34 PLX 2810 D 1 HETATM 37 O O3 PLX . . . DB 6 217.963 174.324 262.726 1 119.67 ? O3 PLX 2810 D 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 110 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #