data_8EB3
#
_model_server_result.job_id            rHR7THDiyzM7C90etN4hEQ 
_model_server_result.datetime_utc      '2024-11-26 11:07:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8eb3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":303}' 
#
_entry.id    8EB3 
#
_exptl.entry_id    8EB3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.129 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'D-GLUTAMIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.97 
_cell.angle_gamma         90 
_cell.entry_id            8EB3 
_cell.length_a            53.002 
_cell.length_b            95.985 
_cell.length_c            57.074 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EB3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 J N N 
#
_chem_comp.formula           'C5 H9 N O4' 
_chem_comp.formula_weight    147.129 
_chem_comp.id                DGL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'D-GLUTAMIC ACID' 
_chem_comp.type              'd-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA DGL sing 83 n n 
N H DGL sing 84 n n 
N H2 DGL sing 85 n n 
CA C DGL sing 86 n n 
CA CB DGL sing 87 n n 
CA HA DGL sing 88 n n 
C O DGL doub 89 n n 
C OXT DGL sing 90 n n 
CB CG DGL sing 91 n n 
CB HB2 DGL sing 92 n n 
CB HB3 DGL sing 93 n n 
CG CD DGL sing 94 n n 
CG HG2 DGL sing 95 n n 
CG HG3 DGL sing 96 n n 
CD OE1 DGL doub 97 n n 
CD OE2 DGL sing 98 n n 
OE2 HE2 DGL sing 99 n n 
OXT HXT DGL sing 100 n n 
#
_atom_sites.entry_id                     8EB3 
_atom_sites.fract_transf_matrix[1][1]    0.018867 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007997 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010418 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01903 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 301 301 GOL GOL . 
D 3 DMS A 1 302 302 DMS DMS . 
E 3 DMS A 1 303 303 DMS DMS . 
F 4 WFI A 1 304 1 WFI LIG . 
G 5 DGL A 1 305 1 DGL DGL . 
H 2 GOL B 1 301 301 GOL GOL . 
I 4 WFI B 1 302 2 WFI LIG . 
J 5 DGL B 1 303 2 DGL DGL . 
K 6 CL B 1 304 1 CL CL . 
L 7 HOH A 1 401 58 HOH HOH . 
L 7 HOH A 2 402 20 HOH HOH . 
L 7 HOH A 3 403 217 HOH HOH . 
L 7 HOH A 4 404 187 HOH HOH . 
L 7 HOH A 5 405 54 HOH HOH . 
L 7 HOH A 6 406 180 HOH HOH . 
L 7 HOH A 7 407 9 HOH HOH . 
L 7 HOH A 8 408 1 HOH HOH . 
L 7 HOH A 9 409 4 HOH HOH . 
L 7 HOH A 10 410 3 HOH HOH . 
L 7 HOH A 11 411 218 HOH HOH . 
L 7 HOH A 12 412 49 HOH HOH . 
L 7 HOH A 13 413 101 HOH HOH . 
L 7 HOH A 14 414 28 HOH HOH . 
L 7 HOH A 15 415 211 HOH HOH . 
L 7 HOH A 16 416 224 HOH HOH . 
L 7 HOH A 17 417 212 HOH HOH . 
L 7 HOH A 18 418 31 HOH HOH . 
L 7 HOH A 19 419 214 HOH HOH . 
L 7 HOH A 20 420 85 HOH HOH . 
L 7 HOH A 21 421 146 HOH HOH . 
L 7 HOH A 22 422 6 HOH HOH . 
L 7 HOH A 23 423 38 HOH HOH . 
L 7 HOH A 24 424 80 HOH HOH . 
L 7 HOH A 25 425 150 HOH HOH . 
L 7 HOH A 26 426 149 HOH HOH . 
L 7 HOH A 27 427 186 HOH HOH . 
L 7 HOH A 28 428 52 HOH HOH . 
L 7 HOH A 29 429 43 HOH HOH . 
L 7 HOH A 30 430 158 HOH HOH . 
L 7 HOH A 31 431 185 HOH HOH . 
L 7 HOH A 32 432 16 HOH HOH . 
L 7 HOH A 33 433 181 HOH HOH . 
L 7 HOH A 34 434 57 HOH HOH . 
L 7 HOH A 35 435 104 HOH HOH . 
L 7 HOH A 36 436 67 HOH HOH . 
L 7 HOH A 37 437 62 HOH HOH . 
L 7 HOH A 38 438 15 HOH HOH . 
L 7 HOH A 39 439 106 HOH HOH . 
L 7 HOH A 40 440 35 HOH HOH . 
L 7 HOH A 41 441 81 HOH HOH . 
L 7 HOH A 42 442 5 HOH HOH . 
L 7 HOH A 43 443 41 HOH HOH . 
L 7 HOH A 44 444 200 HOH HOH . 
L 7 HOH A 45 445 151 HOH HOH . 
L 7 HOH A 46 446 18 HOH HOH . 
L 7 HOH A 47 447 70 HOH HOH . 
L 7 HOH A 48 448 176 HOH HOH . 
L 7 HOH A 49 449 36 HOH HOH . 
L 7 HOH A 50 450 88 HOH HOH . 
L 7 HOH A 51 451 213 HOH HOH . 
L 7 HOH A 52 452 216 HOH HOH . 
L 7 HOH A 53 453 221 HOH HOH . 
L 7 HOH A 54 454 59 HOH HOH . 
L 7 HOH A 55 455 225 HOH HOH . 
L 7 HOH A 56 456 73 HOH HOH . 
L 7 HOH A 57 457 153 HOH HOH . 
L 7 HOH A 58 458 7 HOH HOH . 
L 7 HOH A 59 459 170 HOH HOH . 
L 7 HOH A 60 460 75 HOH HOH . 
L 7 HOH A 61 461 131 HOH HOH . 
L 7 HOH A 62 462 100 HOH HOH . 
L 7 HOH A 63 463 173 HOH HOH . 
L 7 HOH A 64 464 142 HOH HOH . 
L 7 HOH A 65 465 37 HOH HOH . 
L 7 HOH A 66 466 220 HOH HOH . 
M 7 HOH B 1 401 167 HOH HOH . 
M 7 HOH B 2 402 159 HOH HOH . 
M 7 HOH B 3 403 195 HOH HOH . 
M 7 HOH B 4 404 24 HOH HOH . 
M 7 HOH B 5 405 140 HOH HOH . 
M 7 HOH B 6 406 44 HOH HOH . 
M 7 HOH B 7 407 25 HOH HOH . 
M 7 HOH B 8 408 194 HOH HOH . 
M 7 HOH B 9 409 165 HOH HOH . 
M 7 HOH B 10 410 192 HOH HOH . 
M 7 HOH B 11 411 109 HOH HOH . 
M 7 HOH B 12 412 201 HOH HOH . 
M 7 HOH B 13 413 78 HOH HOH . 
M 7 HOH B 14 414 33 HOH HOH . 
M 7 HOH B 15 415 74 HOH HOH . 
M 7 HOH B 16 416 226 HOH HOH . 
M 7 HOH B 17 417 190 HOH HOH . 
M 7 HOH B 18 418 10 HOH HOH . 
M 7 HOH B 19 419 72 HOH HOH . 
M 7 HOH B 20 420 71 HOH HOH . 
M 7 HOH B 21 421 13 HOH HOH . 
M 7 HOH B 22 422 26 HOH HOH . 
M 7 HOH B 23 423 68 HOH HOH . 
M 7 HOH B 24 424 12 HOH HOH . 
M 7 HOH B 25 425 136 HOH HOH . 
M 7 HOH B 26 426 111 HOH HOH . 
M 7 HOH B 27 427 177 HOH HOH . 
M 7 HOH B 28 428 114 HOH HOH . 
M 7 HOH B 29 429 45 HOH HOH . 
M 7 HOH B 30 430 154 HOH HOH . 
M 7 HOH B 31 431 137 HOH HOH . 
M 7 HOH B 32 432 207 HOH HOH . 
M 7 HOH B 33 433 156 HOH HOH . 
M 7 HOH B 34 434 160 HOH HOH . 
M 7 HOH B 35 435 202 HOH HOH . 
M 7 HOH B 36 436 120 HOH HOH . 
M 7 HOH B 37 437 64 HOH HOH . 
M 7 HOH B 38 438 191 HOH HOH . 
M 7 HOH B 39 439 132 HOH HOH . 
M 7 HOH B 40 440 66 HOH HOH . 
M 7 HOH B 41 441 197 HOH HOH . 
M 7 HOH B 42 442 30 HOH HOH . 
M 7 HOH B 43 443 118 HOH HOH . 
M 7 HOH B 44 444 210 HOH HOH . 
M 7 HOH B 45 445 188 HOH HOH . 
M 7 HOH B 46 446 63 HOH HOH . 
M 7 HOH B 47 447 229 HOH HOH . 
M 7 HOH B 48 448 115 HOH HOH . 
M 7 HOH B 49 449 124 HOH HOH . 
M 7 HOH B 50 450 139 HOH HOH . 
M 7 HOH B 51 451 145 HOH HOH . 
M 7 HOH B 52 452 219 HOH HOH . 
M 7 HOH B 53 453 23 HOH HOH . 
M 7 HOH B 54 454 103 HOH HOH . 
M 7 HOH B 55 455 230 HOH HOH . 
M 7 HOH B 56 456 196 HOH HOH . 
M 7 HOH B 57 457 119 HOH HOH . 
M 7 HOH B 58 458 204 HOH HOH . 
M 7 HOH B 59 459 164 HOH HOH . 
M 7 HOH B 60 460 208 HOH HOH . 
M 7 HOH B 61 461 222 HOH HOH . 
M 7 HOH B 62 462 198 HOH HOH . 
M 7 HOH B 63 463 161 HOH HOH . 
M 7 HOH B 64 464 40 HOH HOH . 
M 7 HOH B 65 465 94 HOH HOH . 
M 7 HOH B 66 466 34 HOH HOH . 
M 7 HOH B 67 467 98 HOH HOH . 
M 7 HOH B 68 468 157 HOH HOH . 
M 7 HOH B 69 469 174 HOH HOH . 
M 7 HOH B 70 470 227 HOH HOH . 
M 7 HOH B 71 471 50 HOH HOH . 
M 7 HOH B 72 472 125 HOH HOH . 
M 7 HOH B 73 473 199 HOH HOH . 
M 7 HOH B 74 474 169 HOH HOH . 
M 7 HOH B 75 475 97 HOH HOH . 
M 7 HOH B 76 476 48 HOH HOH . 
M 7 HOH B 77 477 93 HOH HOH . 
M 7 HOH B 78 478 51 HOH HOH . 
M 7 HOH B 79 479 175 HOH HOH . 
M 7 HOH B 80 480 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N DGL . . . J 5 -11.433 -22.644 -0.673 1 27.58 ? N DGL 303 B 1 
HETATM 2 C CA DGL . . . J 5 -11.484 -23.297 -1.978 1 29.05 ? CA DGL 303 B 1 
HETATM 3 C C DGL . . . J 5 -11.831 -24.771 -1.835 1 30.72 ? C DGL 303 B 1 
HETATM 4 O O DGL . . . J 5 -11.777 -25.525 -2.808 1 28.43 ? O DGL 303 B 1 
HETATM 5 C CB DGL . . . J 5 -12.511 -22.609 -2.873 1 26.6 ? CB DGL 303 B 1 
HETATM 6 C CG DGL . . . J 5 -12.142 -21.185 -3.243 1 31.29 ? CG DGL 303 B 1 
HETATM 7 C CD DGL . . . J 5 -10.865 -21.119 -4.055 1 28.59 ? CD DGL 303 B 1 
HETATM 8 O OE1 DGL . . . J 5 -10.848 -21.652 -5.186 1 27.21 ? OE1 DGL 303 B 1 
HETATM 9 O OE2 DGL . . . J 5 -9.873 -20.549 -3.553 1 26.93 ? OE2 DGL 303 B 1 
HETATM 10 O OXT DGL . . . J 5 -12.177 -25.239 -0.746 1 33.58 ? OXT DGL 303 B 1 
HETATM 11 H H2 DGL . . . J 5 -11.172 -21.722 -0.607 1 33.1 ? H2 DGL 303 B 1 
HETATM 12 H H DGL . . . J 5 -10.972 -23.071 -0.086 1 33.1 ? H DGL 303 B 1 
HETATM 13 H HA DGL . . . J 5 -10.615 -23.232 -2.403 1 34.86 ? HA DGL 303 B 1 
HETATM 14 H HB2 DGL . . . J 5 -13.363 -22.584 -2.41 1 31.92 ? HB2 DGL 303 B 1 
HETATM 15 H HB3 DGL . . . J 5 -12.599 -23.116 -3.695 1 31.92 ? HB3 DGL 303 B 1 
HETATM 16 H HG2 DGL . . . J 5 -12.011 -20.669 -2.432 1 37.55 ? HG2 DGL 303 B 1 
HETATM 17 H HG3 DGL . . . J 5 -12.857 -20.799 -3.773 1 37.55 ? HG3 DGL 303 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           17 
#