data_8EBZ # _model_server_result.job_id T3M-1nbwppWq3gOXhoK-Nw _model_server_result.datetime_utc '2024-11-02 06:29:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ebz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 8EBZ # _exptl.entry_id 8EBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.28 _cell.angle_gamma 90 _cell.entry_id 8EBZ _cell.length_a 120.93 _cell.length_b 38.23 _cell.length_c 36.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 51 A THR 50 1_555 A N CSO 52 A CSO 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C CSO 52 A CSO 51 1_555 A N LEU 53 A LEU 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc2 A OD2 ASP 109 A ASP 108 1_555 E MG MG . A MG 204 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc3 A O ASP 120 A ASP 119 1_555 F MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc4 A O GLY 139 A GLY 138 1_555 E MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc5 B O3G GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc6 B O2B GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc7 B O2G GNP . A GNP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc8 C MG MG . A MG 202 1_555 G O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc9 C MG MG . A MG 202 1_555 G O HOH . A HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc10 C MG MG . A MG 202 1_555 G O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc11 D MG MG . A MG 203 1_555 G O HOH . A HOH 339 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc12 D MG MG . A MG 203 1_555 G O HOH . A HOH 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc13 D MG MG . A MG 203 1_555 G O HOH . A HOH 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc14 D MG MG . A MG 203 1_555 G O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc15 D MG MG . A MG 203 1_555 G O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc16 E MG MG . A MG 204 1_555 G O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc17 E MG MG . A MG 204 1_555 G O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc18 E MG MG . A MG 204 1_555 G O HOH . A HOH 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc19 E MG MG . A MG 204 1_555 G O HOH . A HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc20 F MG MG . A MG 205 1_555 G O HOH . A HOH 315 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc21 F MG MG . A MG 205 1_555 G O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc22 F MG MG . A MG 205 1_555 G O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc23 F MG MG . A MG 205 1_555 G O HOH . A HOH 442 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc24 F MG MG . A MG 205 1_555 G O HOH . A HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8EBZ _atom_sites.fract_transf_matrix[1][1] 0.008269 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001952 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026157 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028289 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 201 GNP GNP . C 3 MG A 1 202 1 MG MG . D 3 MG A 1 203 2 MG MG . E 3 MG A 1 204 3 MG MG . F 3 MG A 1 205 4 MG MG . G 4 HOH A 1 301 93 HOH HOH . G 4 HOH A 2 302 94 HOH HOH . G 4 HOH A 3 303 37 HOH HOH . G 4 HOH A 4 304 152 HOH HOH . G 4 HOH A 5 305 163 HOH HOH . G 4 HOH A 6 306 174 HOH HOH . G 4 HOH A 7 307 181 HOH HOH . G 4 HOH A 8 308 86 HOH HOH . G 4 HOH A 9 309 141 HOH HOH . G 4 HOH A 10 310 69 HOH HOH . G 4 HOH A 11 311 101 HOH HOH . G 4 HOH A 12 312 80 HOH HOH . G 4 HOH A 13 313 145 HOH HOH . G 4 HOH A 14 314 130 HOH HOH . G 4 HOH A 15 315 121 HOH HOH . G 4 HOH A 16 316 164 HOH HOH . G 4 HOH A 17 317 63 HOH HOH . G 4 HOH A 18 318 46 HOH HOH . G 4 HOH A 19 319 127 HOH HOH . G 4 HOH A 20 320 158 HOH HOH . G 4 HOH A 21 321 72 HOH HOH . G 4 HOH A 22 322 20 HOH HOH . G 4 HOH A 23 323 32 HOH HOH . G 4 HOH A 24 324 26 HOH HOH . G 4 HOH A 25 325 12 HOH HOH . G 4 HOH A 26 326 22 HOH HOH . G 4 HOH A 27 327 136 HOH HOH . G 4 HOH A 28 328 40 HOH HOH . G 4 HOH A 29 329 91 HOH HOH . G 4 HOH A 30 330 160 HOH HOH . G 4 HOH A 31 331 33 HOH HOH . G 4 HOH A 32 332 102 HOH HOH . G 4 HOH A 33 333 68 HOH HOH . G 4 HOH A 34 334 78 HOH HOH . G 4 HOH A 35 335 49 HOH HOH . G 4 HOH A 36 336 52 HOH HOH . G 4 HOH A 37 337 109 HOH HOH . G 4 HOH A 38 338 154 HOH HOH . G 4 HOH A 39 339 9 HOH HOH . G 4 HOH A 40 340 16 HOH HOH . G 4 HOH A 41 341 21 HOH HOH . G 4 HOH A 42 342 155 HOH HOH . G 4 HOH A 43 343 139 HOH HOH . G 4 HOH A 44 344 177 HOH HOH . G 4 HOH A 45 345 112 HOH HOH . G 4 HOH A 46 346 115 HOH HOH . G 4 HOH A 47 347 161 HOH HOH . G 4 HOH A 48 348 92 HOH HOH . G 4 HOH A 49 349 25 HOH HOH . G 4 HOH A 50 350 167 HOH HOH . G 4 HOH A 51 351 81 HOH HOH . G 4 HOH A 52 352 148 HOH HOH . G 4 HOH A 53 353 23 HOH HOH . G 4 HOH A 54 354 176 HOH HOH . G 4 HOH A 55 355 1 HOH HOH . G 4 HOH A 56 356 42 HOH HOH . G 4 HOH A 57 357 55 HOH HOH . G 4 HOH A 58 358 67 HOH HOH . G 4 HOH A 59 359 2 HOH HOH . G 4 HOH A 60 360 27 HOH HOH . G 4 HOH A 61 361 88 HOH HOH . G 4 HOH A 62 362 38 HOH HOH . G 4 HOH A 63 363 107 HOH HOH . G 4 HOH A 64 364 3 HOH HOH . G 4 HOH A 65 365 142 HOH HOH . G 4 HOH A 66 366 70 HOH HOH . G 4 HOH A 67 367 97 HOH HOH . G 4 HOH A 68 368 90 HOH HOH . G 4 HOH A 69 369 8 HOH HOH . G 4 HOH A 70 370 10 HOH HOH . G 4 HOH A 71 371 65 HOH HOH . G 4 HOH A 72 372 71 HOH HOH . G 4 HOH A 73 373 166 HOH HOH . G 4 HOH A 74 374 17 HOH HOH . G 4 HOH A 75 375 15 HOH HOH . G 4 HOH A 76 376 170 HOH HOH . G 4 HOH A 77 377 5 HOH HOH . G 4 HOH A 78 378 56 HOH HOH . G 4 HOH A 79 379 135 HOH HOH . G 4 HOH A 80 380 124 HOH HOH . G 4 HOH A 81 381 85 HOH HOH . G 4 HOH A 82 382 30 HOH HOH . G 4 HOH A 83 383 57 HOH HOH . G 4 HOH A 84 384 64 HOH HOH . G 4 HOH A 85 385 62 HOH HOH . G 4 HOH A 86 386 106 HOH HOH . G 4 HOH A 87 387 34 HOH HOH . G 4 HOH A 88 388 125 HOH HOH . G 4 HOH A 89 389 182 HOH HOH . G 4 HOH A 90 390 89 HOH HOH . G 4 HOH A 91 391 123 HOH HOH . G 4 HOH A 92 392 108 HOH HOH . G 4 HOH A 93 393 75 HOH HOH . G 4 HOH A 94 394 99 HOH HOH . G 4 HOH A 95 395 114 HOH HOH . G 4 HOH A 96 396 131 HOH HOH . G 4 HOH A 97 397 4 HOH HOH . G 4 HOH A 98 398 128 HOH HOH . G 4 HOH A 99 399 134 HOH HOH . G 4 HOH A 100 400 103 HOH HOH . G 4 HOH A 101 401 24 HOH HOH . G 4 HOH A 102 402 137 HOH HOH . G 4 HOH A 103 403 13 HOH HOH . G 4 HOH A 104 404 95 HOH HOH . G 4 HOH A 105 405 156 HOH HOH . G 4 HOH A 106 406 171 HOH HOH . G 4 HOH A 107 407 79 HOH HOH . G 4 HOH A 108 408 126 HOH HOH . G 4 HOH A 109 409 74 HOH HOH . G 4 HOH A 110 410 6 HOH HOH . G 4 HOH A 111 411 82 HOH HOH . G 4 HOH A 112 412 151 HOH HOH . G 4 HOH A 113 413 44 HOH HOH . G 4 HOH A 114 414 59 HOH HOH . G 4 HOH A 115 415 58 HOH HOH . G 4 HOH A 116 416 7 HOH HOH . G 4 HOH A 117 417 96 HOH HOH . G 4 HOH A 118 418 31 HOH HOH . G 4 HOH A 119 419 110 HOH HOH . G 4 HOH A 120 420 129 HOH HOH . G 4 HOH A 121 421 175 HOH HOH . G 4 HOH A 122 422 61 HOH HOH . G 4 HOH A 123 423 50 HOH HOH . G 4 HOH A 124 424 19 HOH HOH . G 4 HOH A 125 425 53 HOH HOH . G 4 HOH A 126 426 66 HOH HOH . G 4 HOH A 127 427 168 HOH HOH . G 4 HOH A 128 428 60 HOH HOH . G 4 HOH A 129 429 29 HOH HOH . G 4 HOH A 130 430 51 HOH HOH . G 4 HOH A 131 431 122 HOH HOH . G 4 HOH A 132 432 14 HOH HOH . G 4 HOH A 133 433 169 HOH HOH . G 4 HOH A 134 434 11 HOH HOH . G 4 HOH A 135 435 36 HOH HOH . G 4 HOH A 136 436 73 HOH HOH . G 4 HOH A 137 437 48 HOH HOH . G 4 HOH A 138 438 104 HOH HOH . G 4 HOH A 139 439 118 HOH HOH . G 4 HOH A 140 440 105 HOH HOH . G 4 HOH A 141 441 113 HOH HOH . G 4 HOH A 142 442 159 HOH HOH . G 4 HOH A 143 443 41 HOH HOH . G 4 HOH A 144 444 173 HOH HOH . G 4 HOH A 145 445 98 HOH HOH . G 4 HOH A 146 446 147 HOH HOH . G 4 HOH A 147 447 84 HOH HOH . G 4 HOH A 148 448 47 HOH HOH . G 4 HOH A 149 449 28 HOH HOH . G 4 HOH A 150 450 100 HOH HOH . G 4 HOH A 151 451 162 HOH HOH . G 4 HOH A 152 452 138 HOH HOH . G 4 HOH A 153 453 45 HOH HOH . G 4 HOH A 154 454 18 HOH HOH . G 4 HOH A 155 455 146 HOH HOH . G 4 HOH A 156 456 140 HOH HOH . G 4 HOH A 157 457 157 HOH HOH . G 4 HOH A 158 458 153 HOH HOH . G 4 HOH A 159 459 111 HOH HOH . G 4 HOH A 160 460 120 HOH HOH . G 4 HOH A 161 461 76 HOH HOH . G 4 HOH A 162 462 54 HOH HOH . G 4 HOH A 163 463 35 HOH HOH . G 4 HOH A 164 464 133 HOH HOH . G 4 HOH A 165 465 119 HOH HOH . G 4 HOH A 166 466 149 HOH HOH . G 4 HOH A 167 467 117 HOH HOH . G 4 HOH A 168 468 77 HOH HOH . G 4 HOH A 169 469 87 HOH HOH . G 4 HOH A 170 470 150 HOH HOH . G 4 HOH A 171 471 83 HOH HOH . G 4 HOH A 172 472 183 HOH HOH . G 4 HOH A 173 473 180 HOH HOH . G 4 HOH A 174 474 39 HOH HOH . G 4 HOH A 175 475 179 HOH HOH . G 4 HOH A 176 476 185 HOH HOH . G 4 HOH A 177 477 172 HOH HOH . G 4 HOH A 178 478 144 HOH HOH . G 4 HOH A 179 479 116 HOH HOH . G 4 HOH A 180 480 43 HOH HOH . G 4 HOH A 181 481 143 HOH HOH . G 4 HOH A 182 482 184 HOH HOH . G 4 HOH A 183 483 165 HOH HOH . G 4 HOH A 184 484 132 HOH HOH . G 4 HOH A 185 485 178 HOH HOH . G 4 HOH A 186 486 186 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -22.67 _atom_site.Cartn_y -20.102 _atom_site.Cartn_z -11.276 _atom_site.occupancy 0.62 _atom_site.B_iso_or_equiv 17.6 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 205 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #