data_8EC0 # _model_server_result.job_id axMzhDn7_no6GsOFhsU_cw _model_server_result.datetime_utc '2024-11-21 14:01:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ec0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YA","auth_seq_id":301}' # _entry.id 8EC0 # _exptl.entry_id 8EC0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 127.092 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DINUCLEAR COPPER ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 30-meric _pdbx_struct_assembly.oligomeric_count 30 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 YA N N ? 30 ZA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 164 C CYS 164 1_555 C SG CYS 180 C CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 S SG CYS 27 U CYS 27 1_555 S SG CYS 59 U CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 S SG CYS 37 U CYS 37 1_555 S SG CYS 48 U CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 X SG CYS 164 c CYS 164 1_555 X SG CYS 180 c CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 C SG CYS 159 C CYS 159 1_555 GA FE1 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc2 C ND1 HIS 161 C HIS 161 1_555 GA FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc3 C ND1 HIS 161 C HIS 161 1_555 GA FE1 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc4 C SG CYS 178 C CYS 178 1_555 GA FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc5 C SG CYS 178 C CYS 178 1_555 GA FE1 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc6 C N HIS 181 C HIS 181 1_555 GA FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc7 C ND1 HIS 181 C HIS 181 1_555 GA FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc8 H NE2 HIS 96 J HIS 96 1_555 PA FE HEM . J HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc9 H NE2 HIS 183 J HIS 183 1_555 OA FE HEM . J HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc10 H NE2 HIS 197 J HIS 197 1_555 PA FE HEM . J HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc11 I NE2 HIS 62 K HIS 62 1_555 UA FE HEA . K HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc12 I NE2 HIS 241 K HIS 241 1_555 TA CU CU . K CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc13 I O VAL 287 K VAL 287 1_555 TA CU CU . K CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc14 I NE2 HIS 290 K HIS 290 1_555 TA CU CU . K CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc15 I NE2 HIS 376 K HIS 376 1_555 VA FE HEA . K HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc16 I NE2 HIS 378 K HIS 378 1_555 UA FE HEA . K HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc17 J NE2 HIS 105 L HIS 105 1_555 WA FE HEM . L HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc18 J SD MET 225 L MET 225 1_555 WA FE HEM . L HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc19 N ND1 HIS 186 P HIS 186 1_555 YA CU1 CUA . P CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc20 N SG CYS 221 P CYS 221 1_555 YA CU1 CUA . P CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc21 N SG CYS 221 P CYS 221 1_555 ZA CU2 CUA . P CUA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc22 N SG CYS 225 P CYS 225 1_555 YA CU1 CUA . P CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc23 N SG CYS 225 P CYS 225 1_555 ZA CU2 CUA . P CUA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc24 N ND1 HIS 229 P HIS 229 1_555 ZA CU2 CUA . P CUA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc25 N SD MET 232 P MET 232 1_555 YA CU1 CUA . P CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc26 YA CU1 CUA . P CUA 301 1_555 ZA CU2 CUA . P CUA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc27 X SG CYS 159 c CYS 159 1_555 HB FE1 FES . c FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc28 X ND1 HIS 161 c HIS 161 1_555 HB FE2 FES . c FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc29 X ND1 HIS 161 c HIS 161 1_555 HB FE1 FES . c FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc30 X SG CYS 178 c CYS 178 1_555 HB FE2 FES . c FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc31 X SG CYS 178 c CYS 178 1_555 HB FE1 FES . c FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc32 X ND1 HIS 181 c HIS 181 1_555 HB FE2 FES . c FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc33 X NE2 HIS 181 c HIS 181 1_555 HB FE2 FES . c FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc34 CA NE2 HIS 82 j HIS 82 1_555 MB FE HEM . j HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc35 CA NE2 HIS 96 j HIS 96 1_555 NB FE HEM . j HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc36 CA NE2 HIS 183 j HIS 183 1_555 MB FE HEM . j HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc37 CA NE2 HIS 197 j HIS 197 1_555 NB FE HEM . j HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc38 DA NE2 HIS 105 l HIS 105 1_555 SB FE HEM . l HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc39 DA SD MET 225 l MET 225 1_555 SB FE HEM . l HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? # _chem_comp.formula Cu2 _chem_comp.formula_weight 127.092 _chem_comp.id CUA _chem_comp.mon_nstd_flag . _chem_comp.name 'DINUCLEAR COPPER ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 CU1 _chem_comp_bond.atom_id_2 CU2 _chem_comp_bond.comp_id CUA _chem_comp_bond.value_order sing _chem_comp_bond.pdbx_ordinal 70 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 8EC0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code EA 22 PEF A 1 501 720 PEF PEF . FA 23 PGT A 1 502 501 PGT PGT . GA 24 FES C 1 301 301 FES FES . HA 23 PGT C 1 302 315 PGT PGT . IA 22 PEF C 1 303 402 PEF PEF . JA 25 PCF E 1 101 101 PCF PCF . KA 22 PEF H 1 101 102 PEF PEF . LA 23 PGT H 1 102 604 PGT PGT . MA 22 PEF J 1 401 607 PEF PEF . NA 22 PEF J 1 402 502 PEF PEF . OA 26 HEM J 1 403 601 HEM HEM . PA 26 HEM J 1 404 602 HEM HEM . QA 27 UQ6 J 1 405 603 UQ6 UQ6 . RA 22 PEF J 1 406 604 PEF PEF . SA 22 PEF J 1 407 608 PEF PEF . TA 28 CU K 1 601 601 CU CU . UA 29 HEA K 1 602 602 HEA HEA . VA 29 HEA K 1 603 603 HEA HEA . WA 26 HEM L 1 401 401 HEM HEM . XA 23 PGT L 1 402 601 PGT PGT . YA 30 CUA P 1 301 301 CUA CUA . ZA 30 CUA P 1 302 302 CUA CUA . AB 22 PEF V 1 101 608 PEF PEF . BB 22 PEF V 1 102 201 PEF PEF . CB 23 PGT W 1 201 314 PGT PGT . DB 25 PCF W 1 202 202 PCF PCF . EB 25 PCF W 1 203 606 PCF PCF . FB 22 PEF a 1 501 720 PEF PEF . GB 23 PGT a 1 502 501 PGT PGT . HB 24 FES c 1 301 301 FES FES . IB 25 PCF c 1 302 101 PCF PCF . JB 22 PEF c 1 303 402 PEF PEF . KB 22 PEF j 1 401 607 PEF PEF . LB 22 PEF j 1 402 502 PEF PEF . MB 26 HEM j 1 403 601 HEM HEM . NB 26 HEM j 1 404 602 HEM HEM . OB 27 UQ6 j 1 405 603 UQ6 UQ6 . PB 22 PEF j 1 406 604 PEF PEF . QB 22 PEF j 1 407 608 PEF PEF . RB 23 PGT j 1 408 601 PGT PGT . SB 26 HEM l 1 401 401 HEM HEM . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU1 _atom_site.label_comp_id CUA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id YA _atom_site.label_entity_id 30 _atom_site.Cartn_x 135.78 _atom_site.Cartn_y 253.411 _atom_site.Cartn_z 231.491 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 147.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU1 _atom_site.auth_comp_id CUA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id P _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 71 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #