data_8ECQ
#
_model_server_result.job_id            tqHMzfrb2ZcfBDVSL6l5ow 
_model_server_result.datetime_utc      '2024-11-16 07:45:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ecq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    8ECQ 
#
_exptl.entry_id    8ECQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ECQ 
_cell.length_a            66.373 
_cell.length_b            66.373 
_cell.length_c            232.768 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ECQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 L CYS 23 1_555 A SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
disulf ? disulf2 A SG CYS 138 L CYS 134 1_555 A SG CYS 197 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf4 B SG CYS 109 H CYS 106 1_555 B SG CYS 125 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf5 B SG CYS 117 H CYS 114 1_555 B SG CYS 123 H CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf6 B SG CYS 119 H CYS 116 1_555 B SG CYS 136 H CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
disulf ? disulf7 B SG CYS 130 H CYS 127 1_555 B SG CYS 135 H CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf8 B SG CYS 196 H CYS 193 1_555 B SG CYS 252 H CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
covale ? covale1 B C PCA 1 H PCA 1 1_555 B N VAL 2 H VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8ECQ 
_atom_sites.fract_transf_matrix[1][1]    0.015066 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015066 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004296 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL L 1 301 302 GOL GOL . 
D 3 GOL L 1 302 303 GOL GOL . 
E 4 MES H 1 301 301 MES MES . 
F 3 GOL H 1 302 304 GOL GOL . 
G 5 HOH L 1 401 63 HOH HOH . 
G 5 HOH L 2 402 22 HOH HOH . 
G 5 HOH L 3 403 83 HOH HOH . 
G 5 HOH L 4 404 51 HOH HOH . 
G 5 HOH L 5 405 26 HOH HOH . 
G 5 HOH L 6 406 56 HOH HOH . 
G 5 HOH L 7 407 141 HOH HOH . 
G 5 HOH L 8 408 93 HOH HOH . 
G 5 HOH L 9 409 34 HOH HOH . 
G 5 HOH L 10 410 23 HOH HOH . 
G 5 HOH L 11 411 53 HOH HOH . 
G 5 HOH L 12 412 35 HOH HOH . 
G 5 HOH L 13 413 9 HOH HOH . 
G 5 HOH L 14 414 58 HOH HOH . 
G 5 HOH L 15 415 95 HOH HOH . 
G 5 HOH L 16 416 102 HOH HOH . 
G 5 HOH L 17 417 98 HOH HOH . 
G 5 HOH L 18 418 10 HOH HOH . 
G 5 HOH L 19 419 74 HOH HOH . 
G 5 HOH L 20 420 135 HOH HOH . 
G 5 HOH L 21 421 4 HOH HOH . 
G 5 HOH L 22 422 79 HOH HOH . 
G 5 HOH L 23 423 81 HOH HOH . 
G 5 HOH L 24 424 146 HOH HOH . 
G 5 HOH L 25 425 21 HOH HOH . 
G 5 HOH L 26 426 156 HOH HOH . 
G 5 HOH L 27 427 67 HOH HOH . 
G 5 HOH L 28 428 20 HOH HOH . 
G 5 HOH L 29 429 27 HOH HOH . 
G 5 HOH L 30 430 62 HOH HOH . 
G 5 HOH L 31 431 12 HOH HOH . 
G 5 HOH L 32 432 72 HOH HOH . 
G 5 HOH L 33 433 17 HOH HOH . 
G 5 HOH L 34 434 61 HOH HOH . 
G 5 HOH L 35 435 151 HOH HOH . 
G 5 HOH L 36 436 127 HOH HOH . 
G 5 HOH L 37 437 96 HOH HOH . 
G 5 HOH L 38 438 148 HOH HOH . 
G 5 HOH L 39 439 73 HOH HOH . 
G 5 HOH L 40 440 55 HOH HOH . 
G 5 HOH L 41 441 143 HOH HOH . 
G 5 HOH L 42 442 3 HOH HOH . 
G 5 HOH L 43 443 68 HOH HOH . 
G 5 HOH L 44 444 103 HOH HOH . 
G 5 HOH L 45 445 5 HOH HOH . 
G 5 HOH L 46 446 163 HOH HOH . 
G 5 HOH L 47 447 105 HOH HOH . 
G 5 HOH L 48 448 112 HOH HOH . 
G 5 HOH L 49 449 128 HOH HOH . 
G 5 HOH L 50 450 50 HOH HOH . 
G 5 HOH L 51 451 65 HOH HOH . 
G 5 HOH L 52 452 78 HOH HOH . 
G 5 HOH L 53 453 123 HOH HOH . 
G 5 HOH L 54 454 140 HOH HOH . 
G 5 HOH L 55 455 139 HOH HOH . 
G 5 HOH L 56 456 161 HOH HOH . 
G 5 HOH L 57 457 45 HOH HOH . 
G 5 HOH L 58 458 162 HOH HOH . 
G 5 HOH L 59 459 159 HOH HOH . 
G 5 HOH L 60 460 131 HOH HOH . 
G 5 HOH L 61 461 104 HOH HOH . 
G 5 HOH L 62 462 138 HOH HOH . 
G 5 HOH L 63 463 144 HOH HOH . 
H 5 HOH H 1 401 90 HOH HOH . 
H 5 HOH H 2 402 47 HOH HOH . 
H 5 HOH H 3 403 145 HOH HOH . 
H 5 HOH H 4 404 24 HOH HOH . 
H 5 HOH H 5 405 111 HOH HOH . 
H 5 HOH H 6 406 29 HOH HOH . 
H 5 HOH H 7 407 82 HOH HOH . 
H 5 HOH H 8 408 25 HOH HOH . 
H 5 HOH H 9 409 28 HOH HOH . 
H 5 HOH H 10 410 76 HOH HOH . 
H 5 HOH H 11 411 38 HOH HOH . 
H 5 HOH H 12 412 59 HOH HOH . 
H 5 HOH H 13 413 6 HOH HOH . 
H 5 HOH H 14 414 8 HOH HOH . 
H 5 HOH H 15 415 75 HOH HOH . 
H 5 HOH H 16 416 31 HOH HOH . 
H 5 HOH H 17 417 30 HOH HOH . 
H 5 HOH H 18 418 129 HOH HOH . 
H 5 HOH H 19 419 107 HOH HOH . 
H 5 HOH H 20 420 130 HOH HOH . 
H 5 HOH H 21 421 126 HOH HOH . 
H 5 HOH H 22 422 153 HOH HOH . 
H 5 HOH H 23 423 110 HOH HOH . 
H 5 HOH H 24 424 2 HOH HOH . 
H 5 HOH H 25 425 87 HOH HOH . 
H 5 HOH H 26 426 16 HOH HOH . 
H 5 HOH H 27 427 66 HOH HOH . 
H 5 HOH H 28 428 92 HOH HOH . 
H 5 HOH H 29 429 57 HOH HOH . 
H 5 HOH H 30 430 39 HOH HOH . 
H 5 HOH H 31 431 11 HOH HOH . 
H 5 HOH H 32 432 60 HOH HOH . 
H 5 HOH H 33 433 94 HOH HOH . 
H 5 HOH H 34 434 36 HOH HOH . 
H 5 HOH H 35 435 33 HOH HOH . 
H 5 HOH H 36 436 15 HOH HOH . 
H 5 HOH H 37 437 44 HOH HOH . 
H 5 HOH H 38 438 19 HOH HOH . 
H 5 HOH H 39 439 118 HOH HOH . 
H 5 HOH H 40 440 80 HOH HOH . 
H 5 HOH H 41 441 77 HOH HOH . 
H 5 HOH H 42 442 69 HOH HOH . 
H 5 HOH H 43 443 117 HOH HOH . 
H 5 HOH H 44 444 70 HOH HOH . 
H 5 HOH H 45 445 49 HOH HOH . 
H 5 HOH H 46 446 124 HOH HOH . 
H 5 HOH H 47 447 122 HOH HOH . 
H 5 HOH H 48 448 18 HOH HOH . 
H 5 HOH H 49 449 64 HOH HOH . 
H 5 HOH H 50 450 84 HOH HOH . 
H 5 HOH H 51 451 106 HOH HOH . 
H 5 HOH H 52 452 99 HOH HOH . 
H 5 HOH H 53 453 1 HOH HOH . 
H 5 HOH H 54 454 100 HOH HOH . 
H 5 HOH H 55 455 142 HOH HOH . 
H 5 HOH H 56 456 157 HOH HOH . 
H 5 HOH H 57 457 108 HOH HOH . 
H 5 HOH H 58 458 14 HOH HOH . 
H 5 HOH H 59 459 88 HOH HOH . 
H 5 HOH H 60 460 154 HOH HOH . 
H 5 HOH H 61 461 150 HOH HOH . 
H 5 HOH H 62 462 155 HOH HOH . 
H 5 HOH H 63 463 137 HOH HOH . 
H 5 HOH H 64 464 119 HOH HOH . 
H 5 HOH H 65 465 71 HOH HOH . 
H 5 HOH H 66 466 160 HOH HOH . 
H 5 HOH H 67 467 113 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 0.148 -11.709 15.662 1 48.63 ? C1 GOL 301 L 1 
HETATM 2 O O1 GOL . . . C 3 0.492 -13.11 15.396 1 51.03 ? O1 GOL 301 L 1 
HETATM 3 C C2 GOL . . . C 3 -0.914 -11.322 14.629 1 51.92 ? C2 GOL 301 L 1 
HETATM 4 O O2 GOL . . . C 3 -0.595 -11.754 13.354 1 58.51 ? O2 GOL 301 L 1 
HETATM 5 C C3 GOL . . . C 3 -2.225 -11.956 15.187 1 47.65 ? C3 GOL 301 L 1 
HETATM 6 O O3 GOL . . . C 3 -3.256 -11.523 14.35 1 45.74 ? O3 GOL 301 L 1 
HETATM 7 H H11 GOL . . . C 3 0.91 -11.114 15.582 1 58.39 ? H11 GOL 301 L 1 
HETATM 8 H H12 GOL . . . C 3 -0.204 -11.572 16.556 1 58.39 ? H12 GOL 301 L 1 
HETATM 9 H H2 GOL . . . C 3 -0.996 -10.359 14.547 1 62.34 ? H2 GOL 301 L 1 
HETATM 10 H HO2 GOL . . . C 3 -0.084 -12.437 13.426 1 70.25 ? HO2 GOL 301 L 1 
HETATM 11 H H31 GOL . . . C 3 -2.338 -11.686 16.112 1 57.22 ? H31 GOL 301 L 1 
HETATM 12 H H32 GOL . . . C 3 -2.125 -12.92 15.212 1 57.22 ? H32 GOL 301 L 1 
HETATM 13 H HO3 GOL . . . C 3 -2.913 -11.376 13.576 1 54.93 ? HO3 GOL 301 L 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           13 
#