data_8EE4
#
_model_server_result.job_id            5PBlGClXoS9Za90cc6VYig 
_model_server_result.datetime_utc      '2024-12-03 04:13:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ee4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":501}' 
#
_entry.id    8EE4 
#
_exptl.entry_id    8EE4 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8EE4 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EE4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8EE4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ATP A 1 501 401 ATP ATP . 
H 2 ATP B 1 501 401 ATP ATP . 
I 2 ATP D 1 501 501 ATP ATP . 
J 2 ATP F 1 501 501 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . G 2 143.062 132.426 100.138 1 35.14 ? PG ATP 501 A 1 
HETATM 2 O O1G ATP . . . G 2 144.291 133.13 99.673 1 21.22 ? O1G ATP 501 A 1 
HETATM 3 O O2G ATP . . . G 2 142.999 132.249 101.647 1 20.9 ? O2G ATP 501 A 1 
HETATM 4 O O3G ATP . . . G 2 141.758 133.074 99.66 1 24.98 ? O3G ATP 501 A 1 
HETATM 5 P PB ATP . . . G 2 142.103 130.026 98.626 1 0 ? PB ATP 501 A 1 
HETATM 6 O O1B ATP . . . G 2 140.733 130.544 98.533 1 19.14 ? O1B ATP 501 A 1 
HETATM 7 O O2B ATP . . . G 2 142.827 129.864 97.297 1 7.58 ? O2B ATP 501 A 1 
HETATM 8 O O3B ATP . . . G 2 143.01 130.933 99.558 1 25.9 ? O3B ATP 501 A 1 
HETATM 9 P PA ATP . . . G 2 141.618 128.023 100.749 1 0 ? PA ATP 501 A 1 
HETATM 10 O O1A ATP . . . G 2 141.146 129.068 101.679 1 29.48 ? O1A ATP 501 A 1 
HETATM 11 O O2A ATP . . . G 2 142.717 127.13 101.304 1 16.2 ? O2A ATP 501 A 1 
HETATM 12 O O3A ATP . . . G 2 142.158 128.626 99.381 1 10.05 ? O3A ATP 501 A 1 
HETATM 13 O O5' ATP . . . G 2 140.42 127.11 100.279 1 25.42 ? O5' ATP 501 A 1 
HETATM 14 C C5' ATP . . . G 2 140.259 125.768 100.783 1 25.84 ? C5' ATP 501 A 1 
HETATM 15 C C4' ATP . . . G 2 138.794 125.427 100.81 1 22.49 ? C4' ATP 501 A 1 
HETATM 16 O O4' ATP . . . G 2 138.69 124.114 101.381 1 28.08 ? O4' ATP 501 A 1 
HETATM 17 C C3' ATP . . . G 2 138.06 126.266 101.841 1 24.97 ? C3' ATP 501 A 1 
HETATM 18 O O3' ATP . . . G 2 137.532 127.375 101.127 1 31.31 ? O3' ATP 501 A 1 
HETATM 19 C C2' ATP . . . G 2 136.855 125.382 102.172 1 22.02 ? C2' ATP 501 A 1 
HETATM 20 O O2' ATP . . . G 2 135.94 125.555 101.101 1 24.37 ? O2' ATP 501 A 1 
HETATM 21 C C1' ATP . . . G 2 137.409 123.965 101.962 1 25.21 ? C1' ATP 501 A 1 
HETATM 22 N N9 ATP . . . G 2 137.603 123.268 103.227 1 14.47 ? N9 ATP 501 A 1 
HETATM 23 C C8 ATP . . . G 2 138.064 123.793 104.406 1 18.72 ? C8 ATP 501 A 1 
HETATM 24 N N7 ATP . . . G 2 138.135 122.926 105.386 1 13.49 ? N7 ATP 501 A 1 
HETATM 25 C C5 ATP . . . G 2 137.691 121.745 104.812 1 23.18 ? C5 ATP 501 A 1 
HETATM 26 C C6 ATP . . . G 2 137.526 120.443 105.321 1 19.09 ? C6 ATP 501 A 1 
HETATM 27 N N6 ATP . . . G 2 137.801 120.094 106.582 1 18.71 ? N6 ATP 501 A 1 
HETATM 28 N N1 ATP . . . G 2 137.057 119.496 104.482 1 14.96 ? N1 ATP 501 A 1 
HETATM 29 C C2 ATP . . . G 2 136.777 119.834 103.221 1 20.57 ? C2 ATP 501 A 1 
HETATM 30 N N3 ATP . . . G 2 136.893 121.024 102.629 1 25.19 ? N3 ATP 501 A 1 
HETATM 31 C C4 ATP . . . G 2 137.358 121.942 103.482 1 24.77 ? C4 ATP 501 A 1 
HETATM 32 H "H5'1" ATP . . . G 2 140.622 125.71 101.681 1 29.27 ? "H5'1" ATP 501 A 1 
HETATM 33 H "H5'2" ATP . . . G 2 140.725 125.145 100.203 1 26.52 ? "H5'2" ATP 501 A 1 
HETATM 34 H H4' ATP . . . G 2 138.396 125.494 99.927 1 28.13 ? H4' ATP 501 A 1 
HETATM 35 H H3' ATP . . . G 2 138.597 126.513 102.611 1 30.3 ? H3' ATP 501 A 1 
HETATM 36 H HO3' ATP . . . G 2 136.695 127.244 101.058 1 30.16 ? HO3' ATP 501 A 1 
HETATM 37 H H2' ATP . . . G 2 136.472 125.543 103.048 1 29.39 ? H2' ATP 501 A 1 
HETATM 38 H HO2' ATP . . . G 2 135.193 125.762 101.451 1 30.32 ? HO2' ATP 501 A 1 
HETATM 39 H H1' ATP . . . G 2 136.821 123.456 101.383 1 30.13 ? H1' ATP 501 A 1 
HETATM 40 H H8 ATP . . . G 2 138.307 124.685 104.502 1 29.86 ? H8 ATP 501 A 1 
HETATM 41 H HN61 ATP . . . G 2 138.085 120.684 107.14 1 26.94 ? HN61 ATP 501 A 1 
HETATM 42 H HN62 ATP . . . G 2 137.694 119.28 106.837 1 25.99 ? HN62 ATP 501 A 1 
HETATM 43 H H2 ATP . . . G 2 136.46 119.146 102.682 1 27.64 ? H2 ATP 501 A 1 
#
_model_server_stats.io_time_ms              82 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#