data_8EF5 # _model_server_result.job_id YrQKdx--v1YPZPFTMEFBbg _model_server_result.datetime_utc '2024-10-19 15:44:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ef5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":505}' # _entry.id 8EF5 # _exptl.entry_id 8EF5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EF5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EF5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 J N N ? 7 K N N ? 7 L N N ? 7 M N N ? 7 O N N ? 7 P N N ? 7 Q N N ? 7 R N N ? 7 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 141 R CYS 142 1_555 A SG CYS 218 R CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 E SG CYS 160 E CYS 160 1_555 E SG CYS 230 E CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 F SG CYS 141 M CYS 142 1_555 F SG CYS 218 M CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8EF5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 6 7V7 R 1 501 501 7V7 FET . I 7 CLR R 1 502 610 CLR CLR . J 7 CLR R 1 503 612 CLR CLR . K 7 CLR R 1 504 613 CLR CLR . L 7 CLR R 1 505 615 CLR CLR . M 7 CLR R 1 506 614 CLR CLR . N 6 7V7 M 1 501 501 7V7 FET . O 7 CLR M 1 502 614 CLR CLR . P 7 CLR M 1 503 610 CLR CLR . Q 7 CLR M 1 504 612 CLR CLR . R 7 CLR M 1 505 613 CLR CLR . S 7 CLR M 1 506 615 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . R 7 122.541 124.738 133.37 1 72.05 ? C1 CLR 505 M 1 HETATM 2 C C2 CLR . . . R 7 122.773 125.656 134.574 1 72.05 ? C2 CLR 505 M 1 HETATM 3 C C3 CLR . . . R 7 121.465 125.801 135.344 1 72.05 ? C3 CLR 505 M 1 HETATM 4 C C4 CLR . . . R 7 121.155 124.443 135.972 1 72.05 ? C4 CLR 505 M 1 HETATM 5 C C5 CLR . . . R 7 121.035 123.406 134.871 1 72.05 ? C5 CLR 505 M 1 HETATM 6 C C6 CLR . . . R 7 120.005 122.611 134.889 1 72.05 ? C6 CLR 505 M 1 HETATM 7 C C7 CLR . . . R 7 119.752 121.536 133.869 1 72.05 ? C7 CLR 505 M 1 HETATM 8 C C8 CLR . . . R 7 121.018 121.211 133.066 1 72.05 ? C8 CLR 505 M 1 HETATM 9 C C9 CLR . . . R 7 121.647 122.534 132.616 1 72.05 ? C9 CLR 505 M 1 HETATM 10 C C10 CLR . . . R 7 122.101 123.339 133.822 1 72.05 ? C10 CLR 505 M 1 HETATM 11 C C11 CLR . . . R 7 122.791 122.325 131.629 1 72.05 ? C11 CLR 505 M 1 HETATM 12 C C12 CLR . . . R 7 122.361 121.468 130.432 1 72.05 ? C12 CLR 505 M 1 HETATM 13 C C13 CLR . . . R 7 121.786 120.119 130.884 1 72.05 ? C13 CLR 505 M 1 HETATM 14 C C14 CLR . . . R 7 120.583 120.438 131.828 1 72.05 ? C14 CLR 505 M 1 HETATM 15 C C15 CLR . . . R 7 119.986 119.052 132.074 1 72.05 ? C15 CLR 505 M 1 HETATM 16 C C16 CLR . . . R 7 120.008 118.463 130.642 1 72.05 ? C16 CLR 505 M 1 HETATM 17 C C17 CLR . . . R 7 121.1 119.226 129.831 1 72.05 ? C17 CLR 505 M 1 HETATM 18 C C18 CLR . . . R 7 122.847 119.323 131.658 1 72.05 ? C18 CLR 505 M 1 HETATM 19 C C19 CLR . . . R 7 123.3 122.629 134.458 1 72.05 ? C19 CLR 505 M 1 HETATM 20 C C20 CLR . . . R 7 122.038 118.259 129.057 1 72.05 ? C20 CLR 505 M 1 HETATM 21 C C21 CLR . . . R 7 122.664 118.951 127.837 1 72.05 ? C21 CLR 505 M 1 HETATM 22 C C22 CLR . . . R 7 121.274 117.015 128.57 1 72.05 ? C22 CLR 505 M 1 HETATM 23 C C23 CLR . . . R 7 122.092 116.131 127.624 1 72.05 ? C23 CLR 505 M 1 HETATM 24 C C24 CLR . . . R 7 121.257 114.901 127.262 1 72.05 ? C24 CLR 505 M 1 HETATM 25 C C25 CLR . . . R 7 121.962 114.097 126.168 1 72.05 ? C25 CLR 505 M 1 HETATM 26 C C26 CLR . . . R 7 121.995 114.914 124.876 1 72.05 ? C26 CLR 505 M 1 HETATM 27 C C27 CLR . . . R 7 121.212 112.786 125.926 1 72.05 ? C27 CLR 505 M 1 HETATM 28 O O1 CLR . . . R 7 121.607 126.788 136.369 1 72.05 ? O1 CLR 505 M 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 28 #