data_8EF5 # _model_server_result.job_id yzCqMYSubJwHGXWnoeTe3Q _model_server_result.datetime_utc '2024-11-21 22:44:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ef5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":506}' # _entry.id 8EF5 # _exptl.entry_id 8EF5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EF5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EF5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 J N N ? 7 K N N ? 7 L N N ? 7 M N N ? 7 O N N ? 7 P N N ? 7 Q N N ? 7 R N N ? 7 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 141 R CYS 142 1_555 A SG CYS 218 R CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 E SG CYS 160 E CYS 160 1_555 E SG CYS 230 E CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 F SG CYS 141 M CYS 142 1_555 F SG CYS 218 M CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 125 n n C1 C10 CLR sing 126 n n C1 H11 CLR sing 127 n n C1 H12 CLR sing 128 n n C2 C3 CLR sing 129 n n C2 H21 CLR sing 130 n n C2 H22 CLR sing 131 n n C3 C4 CLR sing 132 n n C3 O1 CLR sing 133 n n C3 H3 CLR sing 134 n n C4 C5 CLR sing 135 n n C4 H41 CLR sing 136 n n C4 H42 CLR sing 137 n n C5 C6 CLR doub 138 n n C5 C10 CLR sing 139 n n C6 C7 CLR sing 140 n n C6 H6 CLR sing 141 n n C7 C8 CLR sing 142 n n C7 H71 CLR sing 143 n n C7 H72 CLR sing 144 n n C8 C9 CLR sing 145 n n C8 C14 CLR sing 146 n n C8 H8 CLR sing 147 n n C9 C10 CLR sing 148 n n C9 C11 CLR sing 149 n n C9 H9 CLR sing 150 n n C10 C19 CLR sing 151 n n C11 C12 CLR sing 152 n n C11 H111 CLR sing 153 n n C11 H112 CLR sing 154 n n C12 C13 CLR sing 155 n n C12 H121 CLR sing 156 n n C12 H122 CLR sing 157 n n C13 C14 CLR sing 158 n n C13 C17 CLR sing 159 n n C13 C18 CLR sing 160 n n C14 C15 CLR sing 161 n n C14 H14 CLR sing 162 n n C15 C16 CLR sing 163 n n C15 H151 CLR sing 164 n n C15 H152 CLR sing 165 n n C16 C17 CLR sing 166 n n C16 H161 CLR sing 167 n n C16 H162 CLR sing 168 n n C17 C20 CLR sing 169 n n C17 H17 CLR sing 170 n n C18 H181 CLR sing 171 n n C18 H182 CLR sing 172 n n C18 H183 CLR sing 173 n n C19 H191 CLR sing 174 n n C19 H192 CLR sing 175 n n C19 H193 CLR sing 176 n n C20 C21 CLR sing 177 n n C20 C22 CLR sing 178 n n C20 H20 CLR sing 179 n n C21 H211 CLR sing 180 n n C21 H212 CLR sing 181 n n C21 H213 CLR sing 182 n n C22 C23 CLR sing 183 n n C22 H221 CLR sing 184 n n C22 H222 CLR sing 185 n n C23 C24 CLR sing 186 n n C23 H231 CLR sing 187 n n C23 H232 CLR sing 188 n n C24 C25 CLR sing 189 n n C24 H241 CLR sing 190 n n C24 H242 CLR sing 191 n n C25 C26 CLR sing 192 n n C25 C27 CLR sing 193 n n C25 H25 CLR sing 194 n n C26 H261 CLR sing 195 n n C26 H262 CLR sing 196 n n C26 H263 CLR sing 197 n n C27 H271 CLR sing 198 n n C27 H272 CLR sing 199 n n C27 H273 CLR sing 200 n n O1 H1 CLR sing 201 n n # _atom_sites.entry_id 8EF5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 6 7V7 R 1 501 501 7V7 FET . I 7 CLR R 1 502 610 CLR CLR . J 7 CLR R 1 503 612 CLR CLR . K 7 CLR R 1 504 613 CLR CLR . L 7 CLR R 1 505 615 CLR CLR . M 7 CLR R 1 506 614 CLR CLR . N 6 7V7 M 1 501 501 7V7 FET . O 7 CLR M 1 502 614 CLR CLR . P 7 CLR M 1 503 610 CLR CLR . Q 7 CLR M 1 504 612 CLR CLR . R 7 CLR M 1 505 613 CLR CLR . S 7 CLR M 1 506 615 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . S 7 128.75 116.931 148.74 1 69.95 ? C1 CLR 506 M 1 HETATM 2 C C2 CLR . . . S 7 129.7 117.533 149.778 1 69.95 ? C2 CLR 506 M 1 HETATM 3 C C3 CLR . . . S 7 130.388 118.749 149.17 1 69.95 ? C3 CLR 506 M 1 HETATM 4 C C4 CLR . . . S 7 129.324 119.828 148.996 1 69.95 ? C4 CLR 506 M 1 HETATM 5 C C5 CLR . . . S 7 128.263 119.29 148.054 1 69.95 ? C5 CLR 506 M 1 HETATM 6 C C6 CLR . . . S 7 127.903 120.045 147.061 1 69.95 ? C6 CLR 506 M 1 HETATM 7 C C7 CLR . . . S 7 126.87 119.671 146.036 1 69.95 ? C7 CLR 506 M 1 HETATM 8 C C8 CLR . . . S 7 126.057 118.428 146.411 1 69.95 ? C8 CLR 506 M 1 HETATM 9 C C9 CLR . . . S 7 126.95 117.38 147.082 1 69.95 ? C9 CLR 506 M 1 HETATM 10 C C10 CLR . . . S 7 127.675 117.934 148.301 1 69.95 ? C10 CLR 506 M 1 HETATM 11 C C11 CLR . . . S 7 126.143 116.12 147.403 1 69.95 ? C11 CLR 506 M 1 HETATM 12 C C12 CLR . . . S 7 125.514 115.534 146.127 1 69.95 ? C12 CLR 506 M 1 HETATM 13 C C13 CLR . . . S 7 124.682 116.572 145.354 1 69.95 ? C13 CLR 506 M 1 HETATM 14 C C14 CLR . . . S 7 125.608 117.803 145.101 1 69.95 ? C14 CLR 506 M 1 HETATM 15 C C15 CLR . . . S 7 124.764 118.685 144.179 1 69.95 ? C15 CLR 506 M 1 HETATM 16 C C16 CLR . . . S 7 124.234 117.625 143.182 1 69.95 ? C16 CLR 506 M 1 HETATM 17 C C17 CLR . . . S 7 124.251 116.244 143.909 1 69.95 ? C17 CLR 506 M 1 HETATM 18 C C18 CLR . . . S 7 123.491 117.029 146.208 1 69.95 ? C18 CLR 506 M 1 HETATM 19 C C19 CLR . . . S 7 126.667 118.093 149.441 1 69.95 ? C19 CLR 506 M 1 HETATM 20 C C20 CLR . . . S 7 122.887 115.533 143.723 1 69.95 ? C20 CLR 506 M 1 HETATM 21 C C21 CLR . . . S 7 122.94 114.036 144.048 1 69.95 ? C21 CLR 506 M 1 HETATM 22 C C22 CLR . . . S 7 122.447 115.616 142.256 1 69.95 ? C22 CLR 506 M 1 HETATM 23 C C23 CLR . . . S 7 120.925 115.549 142.141 1 69.95 ? C23 CLR 506 M 1 HETATM 24 C C24 CLR . . . S 7 120.526 115.559 140.664 1 69.95 ? C24 CLR 506 M 1 HETATM 25 C C25 CLR . . . S 7 119.002 115.499 140.533 1 69.95 ? C25 CLR 506 M 1 HETATM 26 C C26 CLR . . . S 7 118.622 115.43 139.053 1 69.95 ? C26 CLR 506 M 1 HETATM 27 C C27 CLR . . . S 7 118.385 116.757 141.148 1 69.95 ? C27 CLR 506 M 1 HETATM 28 O O1 CLR . . . S 7 131.41 119.22 150.05 1 69.95 ? O1 CLR 506 M 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 28 #