data_8EFF # _model_server_result.job_id B43WYJRQ7eb9EWGSPCNxNA _model_server_result.datetime_utc '2024-11-05 12:44:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eff # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1004}' # _entry.id 8EFF # _exptl.entry_id 8EFF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 39.098 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EFF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EFF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 L N N ? 5 P N N ? 5 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 662 A CYS 856 1_555 A SG CYS 680 A CYS 874 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 662 B CYS 856 1_555 B SG CYS 680 B CYS 874 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 C SG CYS 662 C CYS 856 1_555 C SG CYS 680 C CYS 874 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 662 D CYS 856 1_555 D SG CYS 680 D CYS 874 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 E O3B GDP . A GDP 1001 1_555 G MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc2 E O2B GDP . A GDP 1001 1_555 H K K . A K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc3 B O GLN 103 B GLN 297 1_555 L K K . B K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc4 B O GLU 126 B GLU 320 1_555 L K K . B K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.077 ? metalc ? metalc5 B OG1 THR 129 B THR 323 1_555 K MG MG . B MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc6 I O2B GDP . B GDP 1001 1_555 K MG MG . B MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc7 I O3B GDP . B GDP 1001 1_555 K MG MG . B MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc8 I O1B GDP . B GDP 1001 1_555 L K K . B K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc9 I O1A GDP . B GDP 1001 1_555 L K K . B K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc10 M O3B GDP . C GDP 1001 1_555 O MG MG . C MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc11 M O2B GDP . C GDP 1001 1_555 P K K . C K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc12 D O GLN 103 D GLN 297 1_555 T K K . D K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc13 D O GLU 126 D GLU 320 1_555 T K K . D K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? metalc ? metalc14 D OG1 THR 129 D THR 323 1_555 S MG MG . D MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc15 Q O2B GDP . D GDP 1001 1_555 S MG MG . D MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc16 Q O3B GDP . D GDP 1001 1_555 S MG MG . D MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc17 Q O1B GDP . D GDP 1001 1_555 T K K . D K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc18 Q O1A GDP . D GDP 1001 1_555 T K K . D K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8EFF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GDP A 1 1001 961 GDP GDP . F 3 ALF A 1 1002 962 ALF ALF . G 4 MG A 1 1003 963 MG MG . H 5 K A 1 1004 964 K K . I 2 GDP B 1 1001 961 GDP GDP . J 3 ALF B 1 1002 962 ALF ALF . K 4 MG B 1 1003 963 MG MG . L 5 K B 1 1004 964 K K . M 2 GDP C 1 1001 961 GDP GDP . N 3 ALF C 1 1002 962 ALF ALF . O 4 MG C 1 1003 963 MG MG . P 5 K C 1 1004 964 K K . Q 2 GDP D 1 1001 961 GDP GDP . R 3 ALF D 1 1002 962 ALF ALF . S 4 MG D 1 1003 963 MG MG . T 5 K D 1 1004 964 K K . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 5 _atom_site.Cartn_x 471.239 _atom_site.Cartn_y 268.754 _atom_site.Cartn_z 219.596 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 1004 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 62 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #