data_8EFL # _model_server_result.job_id CX-0NRIt3FbwR4N8cuhVdg _model_server_result.datetime_utc '2024-11-22 23:41:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8efl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":401}' # _entry.id 8EFL # _exptl.entry_id 8EFL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 410.725 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6-dichloro-1-{1-[(4-chlorophenyl)methyl]piperidin-4-yl}-1,3-dihydro-2H-benzimidazol-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EFL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EFL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 141 R CYS 142 1_555 A SG CYS 218 R CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 E SG CYS 160 E CYS 160 1_555 E SG CYS 230 E CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 F SG CYS 141 M CYS 142 1_555 F SG CYS 218 M CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C19 H18 Cl3 N3 O' _chem_comp.formula_weight 410.725 _chem_comp.id WH9 _chem_comp.mon_nstd_flag . _chem_comp.name 5,6-dichloro-1-{1-[(4-chlorophenyl)methyl]piperidin-4-yl}-1,3-dihydro-2H-benzimidazol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C03 WH9 sing 451 n n N01 C07 WH9 sing 452 n n C01 C03 WH9 doub 453 n y C01 C02 WH9 sing 454 n y CL3 C02 WH9 sing 455 n n C03 C05 WH9 sing 456 n y O01 C07 WH9 doub 457 n n C07 N02 WH9 sing 458 n n C02 C04 WH9 doub 459 n y C05 N02 WH9 sing 460 n n C05 C06 WH9 doub 461 n y N02 C08 WH9 sing 462 n n C04 C06 WH9 sing 463 n y C04 CL2 WH9 sing 464 n n C08 C09 WH9 sing 465 n n C08 C10 WH9 sing 466 n n C09 C11 WH9 sing 467 n n C10 C12 WH9 sing 468 n n C11 N03 WH9 sing 469 n n C12 N03 WH9 sing 470 n n C17 C14 WH9 doub 471 n y C17 C19 WH9 sing 472 n y N03 C13 WH9 sing 473 n n C14 C18 WH9 sing 474 n y CL1 C19 WH9 sing 475 n n C19 C16 WH9 doub 476 n y C18 C13 WH9 sing 477 n n C18 C15 WH9 doub 478 n y C16 C15 WH9 sing 479 n y C01 H1 WH9 sing 480 n n C06 H2 WH9 sing 481 n n C08 H3 WH9 sing 482 n n C09 H4 WH9 sing 483 n n C09 H5 WH9 sing 484 n n C10 H6 WH9 sing 485 n n C10 H7 WH9 sing 486 n n C11 H8 WH9 sing 487 n n C11 H9 WH9 sing 488 n n C12 H10 WH9 sing 489 n n C12 H11 WH9 sing 490 n n C13 H12 WH9 sing 491 n n C13 H13 WH9 sing 492 n n C14 H14 WH9 sing 493 n n C15 H15 WH9 sing 494 n n C16 H16 WH9 sing 495 n n C17 H17 WH9 sing 496 n n N01 H18 WH9 sing 497 n n # _atom_sites.entry_id 8EFL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 6 WH9 R 1 401 500 WH9 SR1 . I 7 CLR R 1 402 610 CLR CLR . J 7 CLR R 1 403 612 CLR CLR . K 7 CLR R 1 404 613 CLR CLR . L 7 CLR R 1 405 615 CLR CLR . M 7 CLR R 1 406 614 CLR CLR . N 6 WH9 M 1 401 500 WH9 SR1 . O 7 CLR M 1 402 614 CLR CLR . P 7 CLR M 1 403 610 CLR CLR . Q 7 CLR M 1 404 612 CLR CLR . R 7 CLR M 1 405 613 CLR CLR . S 7 CLR M 1 406 615 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 WH9 . . . N 6 95.321 108.443 118.685 1 39.83 ? C01 WH9 401 M 1 HETATM 2 C C02 WH9 . . . N 6 94.643 109.325 119.507 1 39.83 ? C02 WH9 401 M 1 HETATM 3 C C03 WH9 . . . N 6 96.503 107.882 119.125 1 39.83 ? C03 WH9 401 M 1 HETATM 4 C C04 WH9 . . . N 6 95.153 109.64 120.755 1 39.83 ? C04 WH9 401 M 1 HETATM 5 C C05 WH9 . . . N 6 97.026 108.183 120.364 1 39.83 ? C05 WH9 401 M 1 HETATM 6 C C06 WH9 . . . N 6 96.343 109.072 121.192 1 39.83 ? C06 WH9 401 M 1 HETATM 7 C C07 WH9 . . . N 6 98.343 106.791 119.369 1 39.83 ? C07 WH9 401 M 1 HETATM 8 C C08 WH9 . . . N 6 99.126 107.444 121.611 1 39.83 ? C08 WH9 401 M 1 HETATM 9 C C09 WH9 . . . N 6 99.706 108.828 121.946 1 39.83 ? C09 WH9 401 M 1 HETATM 10 C C10 WH9 . . . N 6 98.517 106.817 122.87 1 39.83 ? C10 WH9 401 M 1 HETATM 11 C C11 WH9 . . . N 6 100.764 108.698 123.049 1 39.83 ? C11 WH9 401 M 1 HETATM 12 C C12 WH9 . . . N 6 99.622 106.653 123.924 1 39.83 ? C12 WH9 401 M 1 HETATM 13 C C13 WH9 . . . N 6 101.324 107.824 125.312 1 39.83 ? C13 WH9 401 M 1 HETATM 14 C C14 WH9 . . . N 6 103.553 107.098 124.266 1 39.83 ? C14 WH9 401 M 1 HETATM 15 C C15 WH9 . . . N 6 102.421 105.583 125.744 1 39.83 ? C15 WH9 401 M 1 HETATM 16 C C16 WH9 . . . N 6 103.438 104.654 125.558 1 39.83 ? C16 WH9 401 M 1 HETATM 17 C C17 WH9 . . . N 6 104.565 106.167 124.082 1 39.83 ? C17 WH9 401 M 1 HETATM 18 C C18 WH9 . . . N 6 102.441 106.81 125.07 1 39.83 ? C18 WH9 401 M 1 HETATM 19 C C19 WH9 . . . N 6 104.507 104.948 124.732 1 39.83 ? C19 WH9 401 M 1 HETATM 20 N N01 WH9 . . . N 6 97.33 107.032 118.554 1 39.83 ? N01 WH9 401 M 1 HETATM 21 N N02 WH9 . . . N 6 98.173 107.485 120.489 1 39.83 ? N02 WH9 401 M 1 HETATM 22 N N03 WH9 . . . N 6 100.272 107.956 124.243 1 39.83 ? N03 WH9 401 M 1 HETATM 23 O O01 WH9 . . . N 6 99.241 106.074 119.147 1 39.83 ? O01 WH9 401 M 1 HETATM 24 CL CL1 WH9 . . . N 6 105.77 103.801 124.509 1 39.83 ? CL1 WH9 401 M 1 HETATM 25 CL CL2 WH9 . . . N 6 94.298 110.737 121.759 1 39.83 ? CL2 WH9 401 M 1 HETATM 26 CL CL3 WH9 . . . N 6 93.165 110.03 118.979 1 39.83 ? CL3 WH9 401 M 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #