data_8EFN # _model_server_result.job_id '_lCLUg4jUNdJKam84n6BwA' _model_server_result.datetime_utc '2024-11-28 18:22:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8efn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 8EFN # _exptl.entry_id 8EFN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EFN _cell.length_a 51.469 _cell.length_b 82.702 _cell.length_c 84.796 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EFN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 158 n n C1 C2 EDO sing 159 n n C1 H11 EDO sing 160 n n C1 H12 EDO sing 161 n n O1 HO1 EDO sing 162 n n C2 O2 EDO sing 163 n n C2 H21 EDO sing 164 n n C2 H22 EDO sing 165 n n O2 HO2 EDO sing 166 n n # _atom_sites.entry_id 8EFN _atom_sites.fract_transf_matrix[1][1] 0.019429 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 401 345 EDO EDO . D 2 EDO A 1 402 346 EDO EDO . E 3 4BW D 1 401 345 4BW LIG . F 2 EDO D 1 402 346 EDO EDO . G 2 EDO D 1 403 347 EDO EDO . H 4 HOH A 1 501 221 HOH HOH . H 4 HOH A 2 502 108 HOH HOH . H 4 HOH A 3 503 187 HOH HOH . H 4 HOH A 4 504 113 HOH HOH . H 4 HOH A 5 505 209 HOH HOH . H 4 HOH A 6 506 32 HOH HOH . H 4 HOH A 7 507 164 HOH HOH . H 4 HOH A 8 508 201 HOH HOH . H 4 HOH A 9 509 111 HOH HOH . H 4 HOH A 10 510 65 HOH HOH . H 4 HOH A 11 511 151 HOH HOH . H 4 HOH A 12 512 60 HOH HOH . H 4 HOH A 13 513 177 HOH HOH . H 4 HOH A 14 514 62 HOH HOH . H 4 HOH A 15 515 25 HOH HOH . H 4 HOH A 16 516 55 HOH HOH . H 4 HOH A 17 517 101 HOH HOH . H 4 HOH A 18 518 73 HOH HOH . H 4 HOH A 19 519 136 HOH HOH . H 4 HOH A 20 520 210 HOH HOH . H 4 HOH A 21 521 68 HOH HOH . H 4 HOH A 22 522 18 HOH HOH . H 4 HOH A 23 523 2 HOH HOH . H 4 HOH A 24 524 93 HOH HOH . H 4 HOH A 25 525 49 HOH HOH . H 4 HOH A 26 526 76 HOH HOH . H 4 HOH A 27 527 217 HOH HOH . H 4 HOH A 28 528 195 HOH HOH . H 4 HOH A 29 529 88 HOH HOH . H 4 HOH A 30 530 110 HOH HOH . H 4 HOH A 31 531 30 HOH HOH . H 4 HOH A 32 532 214 HOH HOH . H 4 HOH A 33 533 69 HOH HOH . H 4 HOH A 34 534 24 HOH HOH . H 4 HOH A 35 535 157 HOH HOH . H 4 HOH A 36 536 61 HOH HOH . H 4 HOH A 37 537 23 HOH HOH . H 4 HOH A 38 538 10 HOH HOH . H 4 HOH A 39 539 11 HOH HOH . H 4 HOH A 40 540 223 HOH HOH . H 4 HOH A 41 541 132 HOH HOH . H 4 HOH A 42 542 181 HOH HOH . H 4 HOH A 43 543 56 HOH HOH . H 4 HOH A 44 544 89 HOH HOH . H 4 HOH A 45 545 63 HOH HOH . H 4 HOH A 46 546 7 HOH HOH . H 4 HOH A 47 547 85 HOH HOH . H 4 HOH A 48 548 95 HOH HOH . H 4 HOH A 49 549 99 HOH HOH . H 4 HOH A 50 550 121 HOH HOH . H 4 HOH A 51 551 128 HOH HOH . H 4 HOH A 52 552 33 HOH HOH . H 4 HOH A 53 553 41 HOH HOH . H 4 HOH A 54 554 40 HOH HOH . H 4 HOH A 55 555 28 HOH HOH . H 4 HOH A 56 556 35 HOH HOH . H 4 HOH A 57 557 45 HOH HOH . H 4 HOH A 58 558 141 HOH HOH . H 4 HOH A 59 559 77 HOH HOH . H 4 HOH A 60 560 36 HOH HOH . H 4 HOH A 61 561 179 HOH HOH . H 4 HOH A 62 562 127 HOH HOH . H 4 HOH A 63 563 12 HOH HOH . H 4 HOH A 64 564 27 HOH HOH . H 4 HOH A 65 565 17 HOH HOH . H 4 HOH A 66 566 70 HOH HOH . H 4 HOH A 67 567 106 HOH HOH . H 4 HOH A 68 568 47 HOH HOH . H 4 HOH A 69 569 67 HOH HOH . H 4 HOH A 70 570 148 HOH HOH . H 4 HOH A 71 571 173 HOH HOH . H 4 HOH A 72 572 81 HOH HOH . H 4 HOH A 73 573 118 HOH HOH . H 4 HOH A 74 574 79 HOH HOH . H 4 HOH A 75 575 46 HOH HOH . H 4 HOH A 76 576 172 HOH HOH . H 4 HOH A 77 577 178 HOH HOH . H 4 HOH A 78 578 196 HOH HOH . H 4 HOH A 79 579 161 HOH HOH . H 4 HOH A 80 580 74 HOH HOH . H 4 HOH A 81 581 207 HOH HOH . H 4 HOH A 82 582 182 HOH HOH . H 4 HOH A 83 583 190 HOH HOH . H 4 HOH A 84 584 174 HOH HOH . H 4 HOH A 85 585 211 HOH HOH . H 4 HOH A 86 586 135 HOH HOH . H 4 HOH A 87 587 114 HOH HOH . H 4 HOH A 88 588 112 HOH HOH . H 4 HOH A 89 589 122 HOH HOH . H 4 HOH A 90 590 92 HOH HOH . H 4 HOH A 91 591 176 HOH HOH . H 4 HOH A 92 592 171 HOH HOH . H 4 HOH A 93 593 144 HOH HOH . H 4 HOH A 94 594 218 HOH HOH . H 4 HOH A 95 595 147 HOH HOH . H 4 HOH A 96 596 116 HOH HOH . H 4 HOH A 97 597 119 HOH HOH . H 4 HOH A 98 598 183 HOH HOH . H 4 HOH A 99 599 184 HOH HOH . H 4 HOH A 100 600 130 HOH HOH . H 4 HOH A 101 601 86 HOH HOH . H 4 HOH A 102 602 109 HOH HOH . H 4 HOH A 103 603 91 HOH HOH . H 4 HOH A 104 604 150 HOH HOH . H 4 HOH A 105 605 203 HOH HOH . H 4 HOH A 106 606 220 HOH HOH . H 4 HOH A 107 607 140 HOH HOH . H 4 HOH A 108 608 169 HOH HOH . I 4 HOH D 1 501 43 HOH HOH . I 4 HOH D 2 502 145 HOH HOH . I 4 HOH D 3 503 175 HOH HOH . I 4 HOH D 4 504 57 HOH HOH . I 4 HOH D 5 505 52 HOH HOH . I 4 HOH D 6 506 3 HOH HOH . I 4 HOH D 7 507 26 HOH HOH . I 4 HOH D 8 508 97 HOH HOH . I 4 HOH D 9 509 13 HOH HOH . I 4 HOH D 10 510 123 HOH HOH . I 4 HOH D 11 511 143 HOH HOH . I 4 HOH D 12 512 34 HOH HOH . I 4 HOH D 13 513 138 HOH HOH . I 4 HOH D 14 514 104 HOH HOH . I 4 HOH D 15 515 170 HOH HOH . I 4 HOH D 16 516 6 HOH HOH . I 4 HOH D 17 517 180 HOH HOH . I 4 HOH D 18 518 98 HOH HOH . I 4 HOH D 19 519 87 HOH HOH . I 4 HOH D 20 520 64 HOH HOH . I 4 HOH D 21 521 75 HOH HOH . I 4 HOH D 22 522 168 HOH HOH . I 4 HOH D 23 523 1 HOH HOH . I 4 HOH D 24 524 188 HOH HOH . I 4 HOH D 25 525 115 HOH HOH . I 4 HOH D 26 526 37 HOH HOH . I 4 HOH D 27 527 160 HOH HOH . I 4 HOH D 28 528 80 HOH HOH . I 4 HOH D 29 529 20 HOH HOH . I 4 HOH D 30 530 155 HOH HOH . I 4 HOH D 31 531 8 HOH HOH . I 4 HOH D 32 532 103 HOH HOH . I 4 HOH D 33 533 137 HOH HOH . I 4 HOH D 34 534 213 HOH HOH . I 4 HOH D 35 535 146 HOH HOH . I 4 HOH D 36 536 154 HOH HOH . I 4 HOH D 37 537 193 HOH HOH . I 4 HOH D 38 538 4 HOH HOH . I 4 HOH D 39 539 156 HOH HOH . I 4 HOH D 40 540 126 HOH HOH . I 4 HOH D 41 541 58 HOH HOH . I 4 HOH D 42 542 5 HOH HOH . I 4 HOH D 43 543 191 HOH HOH . I 4 HOH D 44 544 53 HOH HOH . I 4 HOH D 45 545 82 HOH HOH . I 4 HOH D 46 546 14 HOH HOH . I 4 HOH D 47 547 39 HOH HOH . I 4 HOH D 48 548 31 HOH HOH . I 4 HOH D 49 549 16 HOH HOH . I 4 HOH D 50 550 206 HOH HOH . I 4 HOH D 51 551 22 HOH HOH . I 4 HOH D 52 552 153 HOH HOH . I 4 HOH D 53 553 204 HOH HOH . I 4 HOH D 54 554 15 HOH HOH . I 4 HOH D 55 555 44 HOH HOH . I 4 HOH D 56 556 198 HOH HOH . I 4 HOH D 57 557 51 HOH HOH . I 4 HOH D 58 558 84 HOH HOH . I 4 HOH D 59 559 19 HOH HOH . I 4 HOH D 60 560 162 HOH HOH . I 4 HOH D 61 561 38 HOH HOH . I 4 HOH D 62 562 189 HOH HOH . I 4 HOH D 63 563 50 HOH HOH . I 4 HOH D 64 564 158 HOH HOH . I 4 HOH D 65 565 166 HOH HOH . I 4 HOH D 66 566 215 HOH HOH . I 4 HOH D 67 567 29 HOH HOH . I 4 HOH D 68 568 129 HOH HOH . I 4 HOH D 69 569 117 HOH HOH . I 4 HOH D 70 570 78 HOH HOH . I 4 HOH D 71 571 96 HOH HOH . I 4 HOH D 72 572 100 HOH HOH . I 4 HOH D 73 573 94 HOH HOH . I 4 HOH D 74 574 222 HOH HOH . I 4 HOH D 75 575 102 HOH HOH . I 4 HOH D 76 576 21 HOH HOH . I 4 HOH D 77 577 59 HOH HOH . I 4 HOH D 78 578 163 HOH HOH . I 4 HOH D 79 579 152 HOH HOH . I 4 HOH D 80 580 42 HOH HOH . I 4 HOH D 81 581 72 HOH HOH . I 4 HOH D 82 582 120 HOH HOH . I 4 HOH D 83 583 66 HOH HOH . I 4 HOH D 84 584 149 HOH HOH . I 4 HOH D 85 585 54 HOH HOH . I 4 HOH D 86 586 105 HOH HOH . I 4 HOH D 87 587 192 HOH HOH . I 4 HOH D 88 588 167 HOH HOH . I 4 HOH D 89 589 83 HOH HOH . I 4 HOH D 90 590 48 HOH HOH . I 4 HOH D 91 591 139 HOH HOH . I 4 HOH D 92 592 199 HOH HOH . I 4 HOH D 93 593 71 HOH HOH . I 4 HOH D 94 594 131 HOH HOH . I 4 HOH D 95 595 212 HOH HOH . I 4 HOH D 96 596 219 HOH HOH . I 4 HOH D 97 597 125 HOH HOH . I 4 HOH D 98 598 205 HOH HOH . I 4 HOH D 99 599 124 HOH HOH . I 4 HOH D 100 600 142 HOH HOH . I 4 HOH D 101 601 165 HOH HOH . I 4 HOH D 102 602 208 HOH HOH . I 4 HOH D 103 603 216 HOH HOH . I 4 HOH D 104 604 202 HOH HOH . I 4 HOH D 105 605 200 HOH HOH . I 4 HOH D 106 606 134 HOH HOH . I 4 HOH D 107 607 186 HOH HOH . I 4 HOH D 108 608 90 HOH HOH . I 4 HOH D 109 609 197 HOH HOH . I 4 HOH D 110 610 194 HOH HOH . I 4 HOH D 111 611 107 HOH HOH . I 4 HOH D 112 612 133 HOH HOH . I 4 HOH D 113 613 159 HOH HOH . I 4 HOH D 114 614 9 HOH HOH . I 4 HOH D 115 615 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 2 27.02 83.797 36.555 1 21.99 ? C1 EDO 402 D 1 HETATM 2 O O1 EDO . . . F 2 26.234 82.682 36.094 1 15.72 ? O1 EDO 402 D 1 HETATM 3 C C2 EDO . . . F 2 28.304 83.899 35.735 1 24.38 ? C2 EDO 402 D 1 HETATM 4 O O2 EDO . . . F 2 29.245 82.911 36.172 1 20.61 ? O2 EDO 402 D 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 83 _model_server_stats.create_model_time_ms 83 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 37 _model_server_stats.element_count 4 #