data_8EGD # _model_server_result.job_id 8tafOGsqFKNNoRBNqsBxlg _model_server_result.datetime_utc '2024-11-15 03:46:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8egd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 8EGD # _exptl.entry_id 8EGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 176.175 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(4-methoxyphenyl)-1H-tetrazole _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8EGD _cell.length_a 111.96 _cell.length_b 111.96 _cell.length_c 137.18 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_765 -x+2,-y+1,z -1 0 0 0 -1 0 0 0 1 167.94 96.960204 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 245 A GLU 245 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc2 A OD1 ASN 249 A ASN 249 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? metalc ? metalc3 A O VAL 298 A VAL 298 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc4 A O ASP 300 A ASP 300 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? metalc ? metalc5 A O PHE 303 A PHE 303 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc6 A O GLY 337 A GLY 337 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc7 B O1B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc8 B O2A ADP . A ADP 401 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? # _chem_comp.formula 'C8 H8 N4 O' _chem_comp.formula_weight 176.175 _chem_comp.id WIH _chem_comp.mon_nstd_flag . _chem_comp.name 5-(4-methoxyphenyl)-1H-tetrazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 WIH sing 424 n n O2 C3 WIH sing 425 n n C3 C4 WIH doub 426 n y C3 C8 WIH sing 427 n y C4 C5 WIH sing 428 n y C8 C7 WIH doub 429 n y C5 C6 WIH doub 430 n y C7 C6 WIH sing 431 n y C6 C9 WIH sing 432 n n N10 C9 WIH sing 433 n y N10 N11 WIH sing 434 n y C9 N13 WIH doub 435 n y N13 N12 WIH sing 436 n y N11 N12 WIH doub 437 n y C4 HC4 WIH sing 438 n n C7 HC7 WIH sing 439 n n C8 HC8 WIH sing 440 n n C1 HC1A WIH sing 441 n n C1 HC1C WIH sing 442 n n C1 HC1B WIH sing 443 n n C5 HC5 WIH sing 444 n n N10 H1 WIH sing 445 n n # _atom_sites.entry_id 8EGD _atom_sites.fract_transf_matrix[1][1] 0.008932 _atom_sites.fract_transf_matrix[1][2] 0.005157 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 401 ADP ADP . C 3 MG A 1 402 402 MG MG . D 4 K A 1 403 403 K K . E 5 SO4 A 1 404 1 SO4 SO4 . F 5 SO4 A 1 405 2 SO4 SO4 . G 5 SO4 A 1 406 3 SO4 SO4 . H 6 WIH A 1 407 4000 WIH PFE . I 6 WIH A 1 408 4001 WIH PFE . J 6 WIH A 1 409 4002 WIH PFE . K 7 HOH A 1 501 19 HOH HOH . K 7 HOH A 2 502 40 HOH HOH . K 7 HOH A 3 503 5 HOH HOH . K 7 HOH A 4 504 22 HOH HOH . K 7 HOH A 5 505 10 HOH HOH . K 7 HOH A 6 506 15 HOH HOH . K 7 HOH A 7 507 16 HOH HOH . K 7 HOH A 8 508 13 HOH HOH . K 7 HOH A 9 509 14 HOH HOH . K 7 HOH A 10 510 25 HOH HOH . K 7 HOH A 11 511 26 HOH HOH . K 7 HOH A 12 512 23 HOH HOH . K 7 HOH A 13 513 30 HOH HOH . K 7 HOH A 14 514 36 HOH HOH . K 7 HOH A 15 515 20 HOH HOH . K 7 HOH A 16 516 4 HOH HOH . K 7 HOH A 17 517 17 HOH HOH . K 7 HOH A 18 518 9 HOH HOH . K 7 HOH A 19 519 6 HOH HOH . K 7 HOH A 20 520 21 HOH HOH . K 7 HOH A 21 521 44 HOH HOH . K 7 HOH A 22 522 29 HOH HOH . K 7 HOH A 23 523 39 HOH HOH . K 7 HOH A 24 524 48 HOH HOH . K 7 HOH A 25 525 11 HOH HOH . K 7 HOH A 26 526 24 HOH HOH . K 7 HOH A 27 527 47 HOH HOH . K 7 HOH A 28 528 34 HOH HOH . K 7 HOH A 29 529 28 HOH HOH . K 7 HOH A 30 530 43 HOH HOH . K 7 HOH A 31 531 49 HOH HOH . K 7 HOH A 32 532 1 HOH HOH . K 7 HOH A 33 533 2 HOH HOH . K 7 HOH A 34 534 12 HOH HOH . K 7 HOH A 35 535 32 HOH HOH . K 7 HOH A 36 536 45 HOH HOH . K 7 HOH A 37 537 31 HOH HOH . K 7 HOH A 38 538 18 HOH HOH . K 7 HOH A 39 539 3 HOH HOH . K 7 HOH A 40 540 7 HOH HOH . K 7 HOH A 41 541 33 HOH HOH . K 7 HOH A 42 542 42 HOH HOH . K 7 HOH A 43 543 8 HOH HOH . K 7 HOH A 44 544 27 HOH HOH . K 7 HOH A 45 545 37 HOH HOH . K 7 HOH A 46 546 46 HOH HOH . K 7 HOH A 47 547 41 HOH HOH . K 7 HOH A 48 548 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 WIH . . . H 6 112.1 43.537 24.33 1 60.57 ? C4 WIH 407 A 1 HETATM 2 C C7 WIH . . . H 6 111.633 45.23 26.502 1 60.48 ? C7 WIH 407 A 1 HETATM 3 C C6 WIH . . . H 6 111.151 43.92 26.528 1 60.24 ? C6 WIH 407 A 1 HETATM 4 C C9 WIH . . . H 6 110.405 43.415 27.733 1 60.06 ? C9 WIH 407 A 1 HETATM 5 C C8 WIH . . . H 6 112.345 45.688 25.391 1 60.99 ? C8 WIH 407 A 1 HETATM 6 C C1 WIH . . . H 6 113.633 44.565 22.184 1 60.94 ? C1 WIH 407 A 1 HETATM 7 O O2 WIH . . . H 6 113.303 45.416 23.278 1 61.18 ? O2 WIH 407 A 1 HETATM 8 C C3 WIH . . . H 6 112.589 44.846 24.301 1 61.01 ? C3 WIH 407 A 1 HETATM 9 C C5 WIH . . . H 6 111.381 43.075 25.438 1 60.2 ? C5 WIH 407 A 1 HETATM 10 N N10 WIH . . . H 6 109.598 42.325 27.732 1 60.06 ? N10 WIH 407 A 1 HETATM 11 N N11 WIH . . . H 6 109.185 42.198 29.014 1 60.02 ? N11 WIH 407 A 1 HETATM 12 N N12 WIH . . . H 6 109.709 43.199 29.752 1 59.85 ? N12 WIH 407 A 1 HETATM 13 N N13 WIH . . . H 6 110.47 43.988 28.961 1 59.79 ? N13 WIH 407 A 1 HETATM 14 H HC4 WIH . . . H 6 112.26 42.848 23.507 0 60.57 ? HC4 WIH 407 A 1 HETATM 15 H HC7 WIH . . . H 6 111.467 45.915 27.33 0 60.48 ? HC7 WIH 407 A 1 HETATM 16 H HC8 WIH . . . H 6 112.714 46.711 25.385 0 60.99 ? HC8 WIH 407 A 1 HETATM 17 H HC1A WIH . . . H 6 114.224 45.152 21.474 0 60.94 ? HC1A WIH 407 A 1 HETATM 18 H HC1C WIH . . . H 6 112.731 44.225 21.664 0 60.94 ? HC1C WIH 407 A 1 HETATM 19 H HC1B WIH . . . H 6 114.247 43.72 22.511 0 60.94 ? HC1B WIH 407 A 1 HETATM 20 H HC5 WIH . . . H 6 111.023 42.049 25.43 0 60.2 ? HC5 WIH 407 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #